Wall clock time and date at job start Tue Mar 31 2020 06:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.47349 * 2 1 4 4 C 1.35418 * 117.00397 * 179.97438 * 3 2 1 5 5 N 1.32242 * 119.79973 * 359.97438 * 4 3 2 6 6 C 1.31883 * 121.80042 * 180.02562 * 5 4 3 7 7 C 1.50699 * 119.40506 * 180.02562 * 6 5 4 8 8 C 1.38346 * 121.18607 * 0.02562 * 6 5 4 9 9 C 1.38344 * 119.46138 * 359.74201 * 8 6 5 10 10 C 1.39992 * 118.34239 * 0.49798 * 9 8 6 11 11 C 1.47526 * 120.59387 * 179.78101 * 10 9 8 12 12 O 1.21583 * 119.99970 * 179.72037 * 11 10 9 13 13 N 1.34785 * 119.99832 * 359.71631 * 11 10 9 14 14 C 1.46499 * 119.99572 * 179.97438 * 13 11 10 15 15 H 1.09001 * 109.47615 * 325.00219 * 14 13 11 16 16 C 1.50699 * 109.46920 * 205.00019 * 14 13 11 17 17 H 1.08004 * 120.00307 * 0.02562 * 16 14 13 18 18 C 1.37884 * 119.99822 * 180.02562 * 16 14 13 19 19 N 1.31514 * 120.00109 * 0.02562 * 18 16 14 20 20 Si 1.86802 * 119.99874 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46867 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46968 * 119.99877 * 20 18 16 23 23 H 1.48491 * 109.47133 * 239.99928 * 20 18 16 24 24 C 1.53006 * 109.46679 * 85.00499 * 14 13 11 25 25 C 1.52997 * 109.47127 * 294.99474 * 24 14 13 26 26 H 1.08994 * 109.47302 * 299.99854 * 1 2 3 27 27 H 1.09000 * 109.47141 * 60.00411 * 1 2 3 28 28 H 1.09004 * 109.46818 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47014 * 239.99580 * 2 1 3 30 30 H 1.09002 * 109.47067 * 120.00549 * 2 1 3 31 31 H 1.08996 * 109.47438 * 89.99776 * 7 6 5 32 32 H 1.09001 * 109.47114 * 210.00474 * 7 6 5 33 33 H 1.09001 * 109.46995 * 330.00131 * 7 6 5 34 34 H 1.08003 * 120.27054 * 179.97438 * 8 6 5 35 35 H 1.07993 * 120.82930 * 180.25344 * 9 8 6 36 36 H 0.96999 * 120.00153 * 0.02562 * 13 11 10 37 37 H 0.96997 * 119.99669 * 180.02562 * 19 18 16 38 38 H 1.08998 * 109.46505 * 174.99345 * 24 14 13 39 39 H 1.08996 * 109.46884 * 55.00226 * 24 14 13 40 40 H 1.09002 * 109.47153 * 180.02562 * 25 24 14 41 41 H 1.09001 * 109.46832 * 60.00321 * 25 24 14 42 42 H 1.09004 * 109.47261 * 300.00303 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3489 1.5247 0.0005 5 7 4.1508 0.4732 0.0015 6 6 5.4635 0.6003 0.0026 7 6 6.3265 -0.6352 0.0031 8 6 6.0625 1.8473 0.0032 9 6 5.2714 2.9822 -0.0027 10 6 3.8805 2.8228 0.0016 11 6 2.9900 3.9989 0.0005 12 8 1.7836 3.8480 -0.0009 13 7 3.5138 5.2408 0.0011 14 6 2.6294 6.4088 -0.0006 15 1 1.7399 6.1902 -0.5914 16 6 3.3537 7.5864 -0.6001 17 1 4.3710 7.4759 -0.9457 18 6 2.7177 8.8051 -0.7073 19 7 1.4792 8.9399 -0.2860 20 14 3.6154 10.2648 -1.4511 21 1 4.9871 9.8541 -1.8448 22 1 2.8786 10.7407 -2.6494 23 1 3.6938 11.3596 -0.4510 24 6 2.2191 6.7397 1.4358 25 6 1.3767 5.5950 2.0022 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 6.5354 -0.9330 -1.0243 32 1 7.2637 -0.4235 0.5178 33 1 5.8045 -1.4427 0.5164 34 1 7.1391 1.9342 0.0045 35 1 5.7156 3.9665 -0.0064 36 1 4.4763 5.3613 0.0019 37 1 1.0318 9.7971 -0.3619 38 1 1.6344 7.6596 1.4438 39 1 3.1116 6.8713 2.0474 40 1 1.0840 5.8309 3.0253 41 1 1.9614 4.6751 1.9941 42 1 0.4841 5.4635 1.3904 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276885683.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:02 Heat of formation + Delta-G solvation = -71.391606 kcal Electronic energy + Delta-G solvation = -23786.625275 eV Core-core repulsion = 20344.947631 eV Total energy + Delta-G solvation = -3441.677644 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.94938 -40.22331 -39.17532 -36.87543 -34.65770 -33.98043 -33.25701 -32.49135 -31.85144 -29.32702 -28.40420 -25.32915 -24.68757 -24.05797 -23.27949 -22.13277 -21.09937 -19.61603 -19.05413 -17.80173 -17.66170 -17.38702 -16.90394 -16.21117 -16.06718 -15.45973 -15.32055 -15.19782 -15.00795 -14.58096 -14.20482 -14.01233 -13.72657 -13.49894 -13.45937 -13.28480 -13.16714 -13.00200 -12.85343 -12.79359 -12.68806 -12.44517 -12.14814 -12.05482 -11.67440 -11.59483 -11.07671 -10.97123 -10.90732 -10.56659 -10.44651 -9.67485 -9.37126 -8.14687 -6.32270 -0.30234 0.24822 1.45373 1.46326 1.58289 2.02669 2.02899 2.35082 2.58370 2.83610 3.14645 3.17807 3.73695 3.85423 3.95408 4.03988 4.13799 4.27383 4.36335 4.42611 4.48615 4.56158 4.71814 4.76242 4.79541 4.84244 4.89635 4.96202 5.03060 5.08028 5.17749 5.18962 5.25782 5.44284 5.52652 5.56288 5.63513 5.79844 5.94093 6.17317 6.29270 6.74344 6.76020 7.01328 7.34716 7.59861 8.91143 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018246 B = 0.004365 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.251369 B = 6413.589936 C = 7478.024104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.059 3.941 3 O -0.300 6.300 4 C 0.355 3.645 5 N -0.557 5.557 6 C 0.179 3.821 7 C -0.102 4.102 8 C -0.207 4.207 9 C -0.005 4.005 10 C -0.240 4.240 11 C 0.546 3.454 12 O -0.567 6.567 13 N -0.701 5.701 14 C 0.280 3.720 15 H -0.004 1.004 16 C -0.547 4.547 17 H 0.074 0.926 18 C 0.015 3.985 19 N -0.916 5.916 20 Si 0.972 3.028 21 H -0.259 1.259 22 H -0.286 1.286 23 H -0.278 1.278 24 C -0.119 4.119 25 C -0.121 4.121 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.110 0.890 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.077 0.923 34 H 0.186 0.814 35 H 0.165 0.835 36 H 0.400 0.600 37 H 0.265 0.735 38 H 0.073 0.927 39 H 0.042 0.958 40 H 0.045 0.955 41 H 0.038 0.962 42 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.647 -18.198 1.586 21.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.016 4.016 3 O -0.205 6.205 4 C 0.175 3.825 5 N -0.283 5.283 6 C 0.042 3.958 7 C -0.159 4.159 8 C -0.227 4.227 9 C -0.030 4.030 10 C -0.246 4.246 11 C 0.333 3.667 12 O -0.448 6.448 13 N -0.351 5.351 14 C 0.177 3.823 15 H 0.014 0.986 16 C -0.585 4.585 17 H 0.092 0.908 18 C -0.185 4.185 19 N -0.554 5.554 20 Si 0.797 3.203 21 H -0.182 1.182 22 H -0.212 1.212 23 H -0.204 1.204 24 C -0.158 4.158 25 C -0.179 4.179 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.128 0.872 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.127 0.873 33 H 0.095 0.905 34 H 0.203 0.797 35 H 0.183 0.817 36 H 0.236 0.764 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 10.003 -18.785 1.601 21.342 hybrid contribution 0.339 1.735 -0.394 1.811 sum 10.343 -17.050 1.208 19.978 Atomic orbital electron populations 1.21809 0.91917 1.04063 1.02598 1.22848 0.96005 0.80309 1.02467 1.86551 1.16588 1.31550 1.85857 1.19957 0.84576 0.89032 0.88903 1.67353 1.07204 1.31637 1.22144 1.22000 0.88285 0.97464 0.88088 1.20933 0.98168 0.92089 1.04695 1.22165 1.03271 0.90866 1.06357 1.21995 0.89805 1.01899 0.89342 1.20199 0.95669 0.91596 1.17119 1.18259 0.87847 0.83621 0.76974 1.90759 1.16180 1.86477 1.51358 1.46113 1.10681 1.05221 1.73094 1.18379 0.89027 0.81909 0.92994 0.98589 1.21601 1.00651 0.94861 1.41379 0.90829 1.25789 0.95568 1.01643 0.95487 1.70065 1.12749 1.25700 1.46880 0.85300 0.78895 0.78425 0.77714 1.18232 1.21179 1.20407 1.21780 0.98448 0.98795 0.96777 1.21655 0.99229 0.98371 0.98620 0.92689 0.92782 0.87196 0.91290 0.91196 0.88449 0.87254 0.90458 0.79718 0.81712 0.76380 0.92628 0.90817 0.93927 0.93623 0.94325 0.95673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 10.28 71.98 0.74 -2.78 16 2 C 0.06 1.62 6.03 71.98 0.43 2.06 16 3 O -0.30 -11.44 8.22 -66.31 -0.54 -11.98 16 4 C 0.35 12.49 7.51 85.13 0.64 13.13 16 5 N -0.56 -15.76 9.11 -296.07 -2.70 -18.46 16 6 C 0.18 3.70 6.78 42.58 0.29 3.99 16 7 C -0.10 -1.12 10.16 71.24 0.72 -0.40 16 8 C -0.21 -3.81 9.71 22.32 0.22 -3.60 16 9 C 0.00 -0.12 9.64 22.72 0.22 0.10 16 10 C -0.24 -8.49 5.90 -19.91 -0.12 -8.61 16 11 C 0.55 24.24 6.34 86.69 0.55 24.79 16 12 O -0.57 -29.83 12.32 16.84 0.21 -29.62 16 13 N -0.70 -30.55 4.98 -449.27 -2.24 -32.79 16 14 C 0.28 14.83 2.24 44.25 0.10 14.93 16 15 H 0.00 -0.24 7.58 -2.39 -0.02 -0.26 16 16 C -0.55 -29.18 8.73 25.60 0.22 -28.96 16 17 H 0.07 3.65 7.74 -2.91 -0.02 3.62 16 18 C 0.02 0.82 5.29 84.66 0.45 1.27 16 19 N -0.92 -52.97 11.29 21.45 0.24 -52.73 16 20 Si 0.97 42.12 29.54 68.60 2.03 44.14 16 21 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 22 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 24 C -0.12 -6.07 5.45 30.60 0.17 -5.90 16 25 C -0.12 -5.83 8.51 71.98 0.61 -5.22 16 26 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.11 1.78 8.14 -2.38 -0.02 1.76 16 29 H 0.07 1.76 8.11 -2.38 -0.02 1.74 16 30 H 0.07 1.77 8.10 -2.39 -0.02 1.75 16 31 H 0.10 0.84 8.14 -2.39 -0.02 0.83 16 32 H 0.11 0.59 8.07 -2.39 -0.02 0.57 16 33 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.19 1.73 8.06 -2.91 -0.02 1.70 16 35 H 0.17 3.33 6.51 -2.91 -0.02 3.31 16 36 H 0.40 14.45 6.64 -92.71 -0.62 13.83 16 37 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 38 H 0.07 4.16 5.95 -2.39 -0.01 4.15 16 39 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.04 1.83 5.64 -2.39 -0.01 1.82 16 42 H 0.02 1.29 7.84 -2.38 -0.02 1.27 16 Total: -1.00 -74.50 344.90 2.65 -71.85 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: 0.41 Total: 24.78 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 5.24 Total: 4.80 kcal Atomic # 7 Polarization: -99.28 SS G_CDS: -4.69 Total: -103.97 kcal Atomic # 8 Polarization: -41.27 SS G_CDS: -0.34 Total: -41.60 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.14 kcal Total: -74.50 2.65 -71.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276885683.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.455 kcal (2) G-P(sol) polarization free energy of solvation -74.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds