Wall clock time and date at job start Tue Mar 31 2020 06:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47150 * 2 1 4 4 H 1.08994 * 109.46733 * 301.81404 * 3 2 1 5 5 C 1.53003 * 109.46703 * 181.81855 * 3 2 1 6 6 N 1.46504 * 109.46874 * 179.97438 * 5 3 2 7 7 C 1.34770 * 120.00200 * 179.97438 * 6 5 3 8 8 O 1.21583 * 119.99693 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00336 * 180.02562 * 7 6 5 10 10 C 1.39238 * 120.00062 * 175.02771 * 9 7 6 11 11 C 1.39483 * 119.83185 * 215.83846 * 10 9 7 12 12 C 1.36373 * 120.16799 * 179.75461 * 11 10 9 13 13 C 1.40866 * 119.82886 * 0.54221 * 12 11 10 14 14 C 1.41153 * 120.16415 * 179.69784 * 13 12 11 15 15 H 1.08003 * 120.00429 * 170.16367 * 14 13 12 16 16 C 1.39893 * 120.00254 * 350.15723 * 14 13 12 17 17 N 1.30882 * 120.00117 * 323.81442 * 16 14 13 18 18 Si 1.86802 * 120.00364 * 143.80836 * 16 14 13 19 19 H 1.48497 * 109.46899 * 94.99972 * 18 16 14 20 20 H 1.48495 * 109.47256 * 215.00103 * 18 16 14 21 21 H 1.48501 * 109.46739 * 335.00187 * 18 16 14 22 22 C 1.40864 * 119.67222 * 359.70849 * 13 12 11 23 23 C 1.36375 * 119.83185 * 0.02562 * 22 13 12 24 24 O 1.42902 * 109.47236 * 61.81900 * 3 2 1 25 25 C 1.42901 * 113.99812 * 237.57808 * 24 3 2 26 26 H 1.08998 * 109.46916 * 294.70336 * 1 2 3 27 27 H 1.09000 * 109.46575 * 54.69960 * 1 2 3 28 28 H 1.08998 * 109.47086 * 174.69955 * 1 2 3 29 29 H 1.08997 * 109.47327 * 239.99669 * 2 1 3 30 30 H 1.09002 * 109.46848 * 119.99799 * 2 1 3 31 31 H 1.08994 * 109.47158 * 299.99289 * 5 3 2 32 32 H 1.08992 * 109.47113 * 60.00012 * 5 3 2 33 33 H 0.97001 * 119.99927 * 359.97438 * 6 5 3 34 34 H 0.96993 * 119.99555 * 355.02138 * 9 7 6 35 35 H 1.08001 * 119.91383 * 0.02562 * 11 10 9 36 36 H 1.08005 * 120.08439 * 180.25289 * 12 11 10 37 37 H 0.96997 * 120.00422 * 179.97438 * 17 16 14 38 38 H 1.08003 * 120.08889 * 179.97438 * 22 13 12 39 39 H 1.07990 * 119.92188 * 179.97438 * 23 22 13 40 40 H 1.09000 * 109.47063 * 174.62677 * 25 24 3 41 41 H 1.08998 * 109.47306 * 294.63129 * 25 24 3 42 42 H 1.09005 * 109.46983 * 54.63052 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6504 1.9656 -0.8732 5 6 3.5694 1.4426 -0.0458 6 7 4.0578 2.8239 -0.0464 7 6 5.3823 3.0703 -0.0830 8 8 6.1718 2.1463 -0.1160 9 7 5.8316 4.3410 -0.0831 10 6 7.1988 4.5960 -0.0163 11 6 7.6646 5.7003 0.6971 12 6 9.0026 5.9537 0.7712 13 6 9.9141 5.1033 0.1153 14 6 11.3000 5.3625 0.1820 15 1 12.0047 4.6297 -0.1826 16 6 11.7610 6.5687 0.7201 17 7 11.0903 7.6743 0.5178 18 14 13.3336 6.6016 1.7278 19 1 14.4755 6.9659 0.8512 20 1 13.2042 7.6050 2.8148 21 1 13.5712 5.2599 2.3182 22 6 9.4357 3.9930 -0.6076 23 6 8.0953 3.7493 -0.6682 24 8 1.5990 2.1037 1.1876 25 6 0.8276 3.2819 0.9445 26 1 -0.3633 0.4295 0.9336 27 1 -0.3632 0.5939 -0.8387 28 1 -0.3633 -1.0233 -0.0949 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.9591 0.9196 0.8275 32 1 3.9058 0.9383 -0.9516 33 1 3.4278 3.5610 -0.0204 34 1 5.2025 5.0778 -0.1297 35 1 6.9642 6.3539 1.1958 36 1 9.3621 6.8069 1.3274 37 1 11.4096 8.5106 0.8912 38 1 10.1286 3.3368 -1.1134 39 1 7.7269 2.8988 -1.2223 40 1 0.4512 3.6713 1.8904 41 1 1.4544 4.0341 0.4654 42 1 -0.0111 3.0388 0.2921 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289553156.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:06 Heat of formation + Delta-G solvation = -61.088329 kcal Electronic energy + Delta-G solvation = -22639.947380 eV Core-core repulsion = 19198.716519 eV Total energy + Delta-G solvation = -3441.230860 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.92896 -38.78639 -37.27012 -34.75600 -34.21652 -33.53241 -32.89225 -29.62103 -29.29221 -28.45036 -26.62169 -24.92200 -23.46172 -21.54575 -21.50296 -20.71670 -19.96812 -17.98367 -17.27856 -17.22773 -16.68656 -15.63462 -15.40456 -15.09044 -14.96994 -14.50001 -14.22769 -13.92527 -13.73976 -13.56841 -13.31489 -12.78129 -12.65474 -12.45753 -12.01566 -11.97806 -11.82709 -11.66420 -11.42064 -11.27355 -11.07740 -10.99079 -10.94093 -10.49655 -10.18677 -9.88103 -9.61414 -9.53248 -9.11360 -8.84796 -8.55358 -7.45804 -7.11451 -6.88706 -4.18861 2.71587 3.03876 3.06262 3.10796 3.19060 3.26882 3.44170 3.79624 3.89595 4.46100 4.52309 4.55981 4.69856 4.83029 4.93845 5.02616 5.07183 5.26812 5.36938 5.42437 5.57925 5.63667 5.76116 5.77222 5.82761 5.96553 6.27615 6.52675 6.66080 6.87563 6.89807 6.93345 7.02475 7.18706 7.38336 7.43662 7.66125 7.97080 8.06299 8.12540 8.32064 8.59525 8.62560 8.90434 8.99252 9.22144 9.98364 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.042078 B = 0.002614 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.269870 B =10709.985370 C =11051.630794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.131 4.131 3 C 0.077 3.923 4 H 0.069 0.931 5 C 0.130 3.870 6 N -0.750 5.750 7 C 0.694 3.306 8 O -0.580 6.580 9 N -0.665 5.665 10 C -0.009 4.009 11 C -0.103 4.103 12 C -0.184 4.184 13 C 0.105 3.895 14 C -0.460 4.460 15 H 0.082 0.918 16 C 0.089 3.911 17 N -0.762 5.762 18 Si 0.896 3.104 19 H -0.269 1.269 20 H -0.274 1.274 21 H -0.256 1.256 22 C -0.231 4.231 23 C -0.065 4.065 24 O -0.377 6.377 25 C 0.030 3.970 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.388 0.612 34 H 0.388 0.612 35 H 0.087 0.913 36 H 0.118 0.882 37 H 0.283 0.717 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.086 0.914 41 H 0.039 0.961 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.101 -5.710 -0.535 19.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 C 0.019 3.981 4 H 0.087 0.913 5 C 0.006 3.994 6 N -0.408 5.408 7 C 0.395 3.605 8 O -0.458 6.458 9 N -0.310 5.310 10 C -0.102 4.102 11 C -0.124 4.124 12 C -0.203 4.203 13 C 0.102 3.898 14 C -0.488 4.488 15 H 0.100 0.900 16 C -0.134 4.134 17 N -0.384 5.384 18 Si 0.719 3.281 19 H -0.194 1.194 20 H -0.199 1.199 21 H -0.180 1.180 22 C -0.251 4.251 23 C -0.085 4.085 24 O -0.295 6.295 25 C -0.067 4.067 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.221 0.779 34 H 0.221 0.779 35 H 0.105 0.895 36 H 0.136 0.864 37 H 0.094 0.906 38 H 0.111 0.889 39 H 0.124 0.876 40 H 0.104 0.896 41 H 0.058 0.942 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -18.337 -6.392 -0.352 19.422 hybrid contribution -0.078 1.068 0.232 1.096 sum -18.415 -5.324 -0.120 19.170 Atomic orbital electron populations 1.21710 0.95247 1.01741 1.01963 1.21751 0.96625 0.95098 1.03394 1.22510 0.93226 0.94247 0.88099 0.91337 1.21500 0.91947 0.83121 1.02879 1.45000 1.05685 1.08152 1.81925 1.16011 0.81919 0.84043 0.78550 1.90894 1.54200 1.43404 1.57267 1.42025 1.07201 1.05104 1.76713 1.16866 0.80101 1.02421 1.10774 1.20146 0.95887 0.97026 0.99297 1.20823 0.91293 1.02973 1.05237 1.17589 0.93110 0.90420 0.88635 1.19531 0.92632 1.01068 1.35526 0.90033 1.26012 0.98636 0.94599 0.94132 1.69986 1.38130 0.99292 1.31009 0.86510 0.81581 0.79755 0.80256 1.19428 1.19851 1.17999 1.20509 0.93940 1.02530 1.08107 1.20363 0.92977 0.97709 0.97488 1.87981 1.71314 1.40110 1.30119 1.22875 0.94411 0.87195 1.02239 0.92155 0.93110 0.92479 0.90452 0.90570 0.90937 0.90783 0.77867 0.77888 0.89506 0.86415 0.90595 0.88942 0.87638 0.89551 0.94247 0.93944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.72 37.16 0.36 -0.61 16 2 C -0.13 -0.99 5.66 -26.73 -0.15 -1.14 16 3 C 0.08 0.69 2.36 -26.73 -0.06 0.63 16 4 H 0.07 0.52 7.59 -51.93 -0.39 0.12 16 5 C 0.13 1.58 5.37 -4.04 -0.02 1.56 16 6 N -0.75 -10.28 5.45 -65.23 -0.36 -10.64 16 7 C 0.69 13.13 8.40 -86.92 -0.73 12.40 16 8 O -0.58 -13.47 13.79 5.29 0.07 -13.40 16 9 N -0.66 -12.53 5.31 -14.10 -0.07 -12.61 16 10 C -0.01 -0.22 6.29 -83.57 -0.53 -0.74 16 11 C -0.10 -2.45 9.90 -39.79 -0.39 -2.85 16 12 C -0.18 -4.84 8.84 -39.26 -0.35 -5.19 16 13 C 0.11 2.90 5.68 -106.80 -0.61 2.29 16 14 C -0.46 -12.38 8.95 -37.86 -0.34 -12.72 16 15 H 0.08 2.13 8.04 -52.48 -0.42 1.70 16 16 C 0.09 2.21 4.85 -17.34 -0.08 2.13 16 17 N -0.76 -19.22 11.26 55.54 0.63 -18.59 16 18 Si 0.90 18.36 29.68 -169.99 -5.04 13.32 16 19 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 20 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 21 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 22 C -0.23 -6.10 9.74 -39.26 -0.38 -6.48 16 23 C -0.07 -1.65 8.61 -39.79 -0.34 -1.99 16 24 O -0.38 -3.74 9.61 -35.23 -0.34 -4.08 16 25 C 0.03 0.21 10.56 101.05 1.07 1.27 16 26 H 0.06 0.43 7.89 -51.93 -0.41 0.02 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.39 4.22 7.09 -40.82 -0.29 3.93 16 34 H 0.39 5.82 8.83 -40.82 -0.36 5.45 16 35 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 36 H 0.12 3.14 5.86 -52.48 -0.31 2.83 16 37 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 38 H 0.09 2.32 8.06 -52.48 -0.42 1.90 16 39 H 0.11 2.66 6.26 -52.49 -0.33 2.33 16 40 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.04 0.25 7.03 -51.93 -0.37 -0.12 16 42 H 0.04 0.24 8.12 -51.93 -0.42 -0.18 16 LS Contribution 349.47 15.07 5.27 5.27 Total: -1.00 -31.82 349.47 -8.65 -40.47 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -6.24 Total: 11.72 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: -2.56 Total: -11.45 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: 0.20 Total: -41.84 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.27 Total: -17.48 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.04 Total: 13.32 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.82 -8.65 -40.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289553156.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.621 kcal (2) G-P(sol) polarization free energy of solvation -31.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds