Wall clock time and date at job start Tue Mar 31 2020 06:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47150 * 2 1 4 4 H 1.08994 * 109.46733 * 301.81404 * 3 2 1 5 5 C 1.53003 * 109.46703 * 181.81855 * 3 2 1 6 6 N 1.46504 * 109.46874 * 179.97438 * 5 3 2 7 7 C 1.34770 * 120.00200 * 179.97438 * 6 5 3 8 8 O 1.21583 * 119.99693 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00336 * 180.02562 * 7 6 5 10 10 C 1.39238 * 120.00062 * 175.02771 * 9 7 6 11 11 C 1.39483 * 119.83185 * 215.83846 * 10 9 7 12 12 C 1.36373 * 120.16799 * 179.75461 * 11 10 9 13 13 C 1.40866 * 119.82886 * 0.54221 * 12 11 10 14 14 C 1.41153 * 120.16415 * 179.69784 * 13 12 11 15 15 H 1.08003 * 120.00429 * 170.16367 * 14 13 12 16 16 C 1.39893 * 120.00254 * 350.15723 * 14 13 12 17 17 N 1.30882 * 120.00117 * 323.81442 * 16 14 13 18 18 Si 1.86802 * 120.00364 * 143.80836 * 16 14 13 19 19 H 1.48497 * 109.46899 * 94.99972 * 18 16 14 20 20 H 1.48495 * 109.47256 * 215.00103 * 18 16 14 21 21 H 1.48501 * 109.46739 * 335.00187 * 18 16 14 22 22 C 1.40864 * 119.67222 * 359.70849 * 13 12 11 23 23 C 1.36375 * 119.83185 * 0.02562 * 22 13 12 24 24 O 1.42902 * 109.47236 * 61.81900 * 3 2 1 25 25 C 1.42901 * 113.99812 * 237.57808 * 24 3 2 26 26 H 1.08998 * 109.46916 * 294.70336 * 1 2 3 27 27 H 1.09000 * 109.46575 * 54.69960 * 1 2 3 28 28 H 1.08998 * 109.47086 * 174.69955 * 1 2 3 29 29 H 1.08997 * 109.47327 * 239.99669 * 2 1 3 30 30 H 1.09002 * 109.46848 * 119.99799 * 2 1 3 31 31 H 1.08994 * 109.47158 * 299.99289 * 5 3 2 32 32 H 1.08992 * 109.47113 * 60.00012 * 5 3 2 33 33 H 0.97001 * 119.99927 * 359.97438 * 6 5 3 34 34 H 0.96993 * 119.99555 * 355.02138 * 9 7 6 35 35 H 1.08001 * 119.91383 * 0.02562 * 11 10 9 36 36 H 1.08005 * 120.08439 * 180.25289 * 12 11 10 37 37 H 0.96997 * 120.00422 * 179.97438 * 17 16 14 38 38 H 1.08003 * 120.08889 * 179.97438 * 22 13 12 39 39 H 1.07990 * 119.92188 * 179.97438 * 23 22 13 40 40 H 1.09000 * 109.47063 * 174.62677 * 25 24 3 41 41 H 1.08998 * 109.47306 * 294.63129 * 25 24 3 42 42 H 1.09005 * 109.46983 * 54.63052 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6504 1.9656 -0.8732 5 6 3.5694 1.4426 -0.0458 6 7 4.0578 2.8239 -0.0464 7 6 5.3823 3.0703 -0.0830 8 8 6.1718 2.1463 -0.1160 9 7 5.8316 4.3410 -0.0831 10 6 7.1988 4.5960 -0.0163 11 6 7.6646 5.7003 0.6971 12 6 9.0026 5.9537 0.7712 13 6 9.9141 5.1033 0.1153 14 6 11.3000 5.3625 0.1820 15 1 12.0047 4.6297 -0.1826 16 6 11.7610 6.5687 0.7201 17 7 11.0903 7.6743 0.5178 18 14 13.3336 6.6016 1.7278 19 1 14.4755 6.9659 0.8512 20 1 13.2042 7.6050 2.8148 21 1 13.5712 5.2599 2.3182 22 6 9.4357 3.9930 -0.6076 23 6 8.0953 3.7493 -0.6682 24 8 1.5990 2.1037 1.1876 25 6 0.8276 3.2819 0.9445 26 1 -0.3633 0.4295 0.9336 27 1 -0.3632 0.5939 -0.8387 28 1 -0.3633 -1.0233 -0.0949 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.9591 0.9196 0.8275 32 1 3.9058 0.9383 -0.9516 33 1 3.4278 3.5610 -0.0204 34 1 5.2025 5.0778 -0.1297 35 1 6.9642 6.3539 1.1958 36 1 9.3621 6.8069 1.3274 37 1 11.4096 8.5106 0.8912 38 1 10.1286 3.3368 -1.1134 39 1 7.7269 2.8988 -1.2223 40 1 0.4512 3.6713 1.8904 41 1 1.4544 4.0341 0.4654 42 1 -0.0111 3.0388 0.2921 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289553156.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:05 Heat of formation + Delta-G solvation = -81.941603 kcal Electronic energy + Delta-G solvation = -22640.851645 eV Core-core repulsion = 19198.716519 eV Total energy + Delta-G solvation = -3442.135126 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.40545 -39.75321 -38.99737 -36.31780 -35.58842 -34.83370 -34.17293 -31.45119 -30.97153 -29.64679 -27.37177 -26.58421 -24.46848 -23.29632 -22.53780 -22.28946 -21.51445 -19.53888 -19.12096 -18.27337 -17.93067 -17.07906 -16.46475 -16.44683 -16.27074 -15.82104 -15.62937 -15.13623 -14.95035 -14.60799 -14.51286 -14.20321 -14.03115 -13.91370 -13.81032 -13.22584 -13.04525 -12.82953 -12.67810 -12.45310 -12.34190 -12.25076 -12.01363 -11.94011 -11.61912 -11.52611 -11.30795 -10.96599 -10.52516 -10.44686 -10.10683 -9.44522 -9.01119 -8.75835 -6.18307 0.89403 1.18215 1.37536 1.45875 1.58066 1.77513 2.17662 2.21857 2.64210 2.80580 3.37470 3.72847 3.75465 3.97410 4.08800 4.40030 4.41327 4.49393 4.54012 4.55681 4.60664 4.63598 4.81012 4.88347 4.93591 4.97807 5.10518 5.13583 5.20395 5.21925 5.31183 5.42981 5.46677 5.50572 5.65713 5.79580 6.05779 6.15594 6.24840 6.26919 6.37731 6.64532 6.90688 7.03412 7.16802 7.68466 8.14547 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.042078 B = 0.002614 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.269870 B =10709.985370 C =11051.630794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.131 4.131 3 C 0.087 3.913 4 H 0.090 0.910 5 C 0.127 3.873 6 N -0.727 5.727 7 C 0.691 3.309 8 O -0.626 6.626 9 N -0.657 5.657 10 C 0.001 3.999 11 C -0.100 4.100 12 C -0.204 4.204 13 C 0.077 3.923 14 C -0.498 4.498 15 H 0.075 0.925 16 C 0.052 3.948 17 N -0.786 5.786 18 Si 0.973 3.027 19 H -0.257 1.257 20 H -0.259 1.259 21 H -0.264 1.264 22 C -0.254 4.254 23 C -0.076 4.076 24 O -0.398 6.398 25 C 0.021 3.979 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.406 0.594 34 H 0.411 0.589 35 H 0.121 0.879 36 H 0.112 0.888 37 H 0.296 0.704 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.047 0.953 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.778 -4.876 -0.088 21.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.169 4.169 3 C 0.029 3.971 4 H 0.108 0.892 5 C 0.002 3.998 6 N -0.384 5.384 7 C 0.392 3.608 8 O -0.507 6.507 9 N -0.305 5.305 10 C -0.093 4.093 11 C -0.120 4.120 12 C -0.224 4.224 13 C 0.074 3.926 14 C -0.525 4.525 15 H 0.093 0.907 16 C -0.169 4.169 17 N -0.408 5.408 18 Si 0.792 3.208 19 H -0.181 1.181 20 H -0.183 1.183 21 H -0.188 1.188 22 C -0.274 4.274 23 C -0.096 4.096 24 O -0.318 6.318 25 C -0.075 4.075 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.242 0.758 34 H 0.247 0.753 35 H 0.139 0.861 36 H 0.129 0.871 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.120 0.880 40 H 0.110 0.890 41 H 0.065 0.935 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -20.106 -5.526 0.083 20.852 hybrid contribution 0.302 0.794 0.057 0.851 sum -19.804 -4.732 0.140 20.362 Atomic orbital electron populations 1.21675 0.94118 1.02429 1.02017 1.21769 0.97530 0.94188 1.03395 1.22462 0.90587 0.95367 0.88722 0.89229 1.21682 0.94408 0.81736 1.01941 1.44808 1.03970 1.09670 1.79965 1.16205 0.83183 0.83302 0.78150 1.90870 1.55920 1.44712 1.59186 1.41789 1.05857 1.06135 1.76673 1.16891 0.81979 1.01360 1.09033 1.20404 0.95583 0.97322 0.98696 1.20874 0.92418 1.03080 1.06033 1.17913 0.93999 0.91201 0.89500 1.19740 0.92631 1.02251 1.37893 0.90721 1.26823 1.02210 0.93512 0.94315 1.69958 1.39722 1.00046 1.31088 0.85354 0.77212 0.79527 0.78662 1.18114 1.18266 1.18751 1.20629 0.94703 1.03008 1.09035 1.20453 0.92990 0.98106 0.98028 1.87965 1.71792 1.41215 1.30798 1.23075 0.94849 0.86411 1.03169 0.92863 0.92044 0.91727 0.89409 0.91741 0.93092 0.90744 0.75777 0.75299 0.86114 0.87059 0.89242 0.89179 0.88012 0.88980 0.93457 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.72 71.98 0.70 -0.87 16 2 C -0.13 -1.76 5.66 30.60 0.17 -1.59 16 3 C 0.09 1.36 2.36 30.60 0.07 1.43 16 4 H 0.09 1.05 7.59 -2.39 -0.02 1.03 16 5 C 0.13 2.93 5.37 86.38 0.46 3.39 16 6 N -0.73 -18.65 5.45 -478.55 -2.61 -21.26 16 7 C 0.69 25.48 8.40 179.06 1.50 26.98 16 8 O -0.63 -29.28 13.79 -3.98 -0.05 -29.33 16 9 N -0.66 -23.72 5.31 -316.78 -1.68 -25.41 16 10 C 0.00 0.05 6.29 38.57 0.24 0.29 16 11 C -0.10 -4.67 9.90 22.13 0.22 -4.45 16 12 C -0.20 -10.91 8.84 22.48 0.20 -10.71 16 13 C 0.08 4.35 5.68 -21.28 -0.12 4.23 16 14 C -0.50 -27.67 8.95 23.39 0.21 -27.46 16 15 H 0.07 4.08 8.04 -2.91 -0.02 4.05 16 16 C 0.05 2.62 4.85 85.24 0.41 3.03 16 17 N -0.79 -39.64 11.26 21.82 0.25 -39.39 16 18 Si 0.97 37.53 29.68 68.60 2.04 39.57 16 19 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 20 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 21 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 22 C -0.25 -13.95 9.74 22.48 0.22 -13.73 16 23 C -0.08 -3.90 8.61 22.14 0.19 -3.71 16 24 O -0.40 -7.10 9.61 -148.98 -1.43 -8.53 16 25 C 0.02 0.24 10.56 113.37 1.20 1.44 16 26 H 0.05 0.66 7.89 -2.39 -0.02 0.64 16 27 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.09 0.99 8.14 -2.39 -0.02 0.98 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.41 7.66 7.09 -92.71 -0.66 7.01 16 34 H 0.41 11.16 8.83 -92.71 -0.82 10.34 16 35 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 36 H 0.11 6.00 5.86 -2.91 -0.02 5.98 16 37 H 0.30 13.13 8.30 -92.71 -0.77 12.36 16 38 H 0.09 4.79 8.06 -2.91 -0.02 4.77 16 39 H 0.10 5.28 6.26 -2.92 -0.02 5.26 16 40 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.05 0.45 7.03 -2.39 -0.02 0.43 16 42 H 0.06 0.47 8.12 -2.38 -0.02 0.45 16 Total: -1.00 -70.58 349.47 1.75 -68.84 By element: Atomic # 1 Polarization: 37.66 SS G_CDS: -0.44 Total: 37.22 kcal Atomic # 6 Polarization: -27.39 SS G_CDS: 5.68 Total: -21.71 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -4.04 Total: -86.05 kcal Atomic # 8 Polarization: -36.37 SS G_CDS: -1.49 Total: -37.86 kcal Atomic # 14 Polarization: 37.53 SS G_CDS: 2.04 Total: 39.57 kcal Total: -70.58 1.75 -68.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289553156.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.106 kcal (2) G-P(sol) polarization free energy of solvation -70.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds