Wall clock time and date at job start Tue Mar 31 2020 06:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47006 * 2 1 4 4 H 1.09000 * 110.65622 * 303.01589 * 3 2 1 5 5 C 1.51581 * 110.59850 * 65.92866 * 3 2 1 6 6 O 1.21235 * 127.15882 * 298.79129 * 5 3 2 7 7 N 1.34769 * 105.68692 * 118.52735 * 5 3 2 8 8 C 1.46500 * 124.18017 * 180.02562 * 7 5 3 9 9 C 1.52995 * 109.47213 * 88.84498 * 8 7 5 10 10 C 1.50698 * 115.55118 * 186.38798 * 9 8 7 11 11 H 1.08000 * 120.00329 * 144.29580 * 10 9 8 12 12 C 1.37879 * 119.99876 * 324.29114 * 10 9 8 13 13 N 1.31512 * 119.99961 * 351.22656 * 12 10 9 14 14 Si 1.86800 * 119.99915 * 171.22196 * 12 10 9 15 15 H 1.48500 * 109.47052 * 90.00590 * 14 12 10 16 16 H 1.48502 * 109.47148 * 209.99997 * 14 12 10 17 17 H 1.48496 * 109.47516 * 330.00473 * 14 12 10 18 18 C 1.52998 * 117.49859 * 40.71441 * 9 8 7 19 19 C 1.53006 * 117.49814 * 332.05748 * 9 8 7 20 20 C 1.33794 * 111.64361 * 359.97438 * 7 5 3 21 21 O 1.21536 * 123.77388 * 179.97438 * 20 7 5 22 22 N 1.34530 * 112.45780 * 0.02562 * 20 7 5 23 23 C 1.46497 * 126.69211 * 179.97438 * 22 20 7 24 24 C 1.52996 * 117.49614 * 15.65436 * 23 22 20 25 25 C 1.53003 * 117.49973 * 306.99484 * 23 22 20 26 26 H 1.09005 * 109.47292 * 183.79016 * 1 2 3 27 27 H 1.08995 * 109.47547 * 303.79528 * 1 2 3 28 28 H 1.09003 * 109.46864 * 63.79538 * 1 2 3 29 29 H 1.09001 * 109.47678 * 239.99778 * 2 1 3 30 30 H 1.09002 * 109.46710 * 119.99566 * 2 1 3 31 31 H 1.08997 * 109.47233 * 208.85081 * 8 7 5 32 32 H 1.09004 * 109.46875 * 328.84427 * 8 7 5 33 33 H 0.96998 * 120.00138 * 185.00451 * 13 12 10 34 34 H 1.09001 * 117.50176 * 0.02562 * 18 9 8 35 35 H 1.09010 * 117.49911 * 145.02044 * 18 9 8 36 36 H 1.09001 * 117.49260 * 214.97947 * 19 9 8 37 37 H 1.08990 * 117.49602 * 359.97438 * 19 9 8 38 38 H 1.08997 * 115.55053 * 161.32199 * 23 22 20 39 39 H 1.09002 * 117.50289 * 359.97438 * 24 23 22 40 40 H 1.09004 * 117.49810 * 145.02112 * 24 23 22 41 41 H 1.08997 * 117.49235 * 214.97731 * 25 23 22 42 42 H 1.09000 * 117.49656 * 359.97297 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6442 1.9903 -0.8552 5 6 1.6721 2.1382 1.2955 6 8 0.5573 2.3436 1.7255 7 7 2.8421 2.4758 1.8729 8 6 2.9556 3.1739 3.1558 9 6 2.9926 2.1501 4.2921 10 6 2.9570 2.7237 5.6852 11 1 2.4279 2.2035 6.4700 12 6 3.6001 3.9124 5.9579 13 7 4.3853 4.4576 5.0547 14 14 3.3558 4.7487 7.6103 15 1 4.3810 4.2617 8.5679 16 1 3.4907 6.2185 7.4460 17 1 2.0018 4.4310 8.1307 18 6 3.8165 0.8798 4.0719 19 6 2.2874 0.8121 4.0607 20 6 3.8873 2.0935 1.1302 21 8 5.0455 2.2876 1.4430 22 7 3.5128 1.4712 -0.0023 23 6 4.3973 0.9282 -1.0362 24 6 5.8718 0.7375 -0.6755 25 6 5.4551 1.8644 -1.6240 26 1 -0.3634 -1.0255 0.0679 27 1 -0.3634 0.5716 0.8540 28 1 -0.3633 0.4538 -0.9221 29 1 1.8934 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 3.8719 3.7641 3.1684 32 1 2.0973 3.8327 3.2881 33 1 4.8941 5.2543 5.2717 34 1 4.3326 0.7737 3.1177 35 1 4.3326 0.4588 4.9348 36 1 1.7980 0.3467 4.9163 37 1 1.7967 0.6616 3.0992 38 1 3.9443 0.1971 -1.7058 39 1 6.1840 1.0165 0.3309 40 1 6.3891 -0.1189 -1.1082 41 1 5.6982 1.7489 -2.6802 42 1 5.4926 2.8845 -1.2417 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348762507.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:53 Heat of formation + Delta-G solvation = 21.728187 kcal Electronic energy + Delta-G solvation = -25155.214584 eV Core-core repulsion = 21717.574917 eV Total energy + Delta-G solvation = -3437.639667 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 4.01 seconds Orbital eigenvalues (eV) -42.12831 -38.50745 -37.37940 -36.15401 -35.75744 -34.01357 -32.23036 -31.81992 -27.37283 -26.42652 -25.47153 -23.19999 -22.77993 -22.36339 -21.37959 -20.68736 -19.69195 -18.81795 -17.31713 -16.75618 -16.22098 -15.89778 -15.81661 -14.94018 -14.60040 -14.36715 -14.31315 -13.90129 -13.80386 -13.18343 -13.05378 -13.00820 -12.35685 -12.10993 -12.00812 -11.72554 -11.55166 -11.45621 -11.32748 -11.02805 -10.98092 -10.79286 -10.51014 -10.44681 -10.21649 -10.05636 -9.95511 -9.44663 -9.10173 -8.91711 -8.64090 -8.45653 -8.07415 -6.10193 -4.14750 2.06389 2.43984 3.25235 3.31602 3.34391 3.38188 3.45092 3.96009 4.27579 4.33864 4.63805 4.76201 4.78643 4.94374 4.96536 5.01709 5.19362 5.29419 5.45454 5.51656 5.61912 5.68776 5.83943 5.92905 6.00160 6.06872 6.12658 6.24129 6.31141 6.35151 6.45508 6.47776 6.69197 6.74434 6.84271 7.03629 7.17287 7.35228 7.52048 7.74407 7.89628 7.91911 8.32156 8.63534 8.82470 9.45156 10.92320 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018673 B = 0.005844 C = 0.004964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.109587 B = 4789.835538 C = 5639.777087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.116 4.116 3 C 0.092 3.908 4 H 0.118 0.882 5 C 0.520 3.480 6 O -0.469 6.469 7 N -0.565 5.565 8 C 0.152 3.848 9 C 0.046 3.954 10 C -0.486 4.486 11 H 0.065 0.935 12 C 0.067 3.933 13 N -0.882 5.882 14 Si 0.901 3.099 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.272 1.272 18 C -0.198 4.198 19 C -0.210 4.210 20 C 0.699 3.301 21 O -0.525 6.525 22 N -0.606 5.606 23 C 0.108 3.892 24 C -0.185 4.185 25 C -0.191 4.191 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.141 0.859 32 H 0.077 0.923 33 H 0.266 0.734 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.134 0.866 39 H 0.126 0.874 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.489 -6.948 -14.961 16.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.155 4.155 3 C -0.015 4.015 4 H 0.135 0.865 5 C 0.307 3.693 6 O -0.340 6.340 7 N -0.309 5.309 8 C 0.034 3.966 9 C 0.045 3.955 10 C -0.524 4.524 11 H 0.084 0.916 12 C -0.136 4.136 13 N -0.519 5.519 14 Si 0.728 3.272 15 H -0.205 1.205 16 H -0.209 1.209 17 H -0.196 1.196 18 C -0.236 4.236 19 C -0.247 4.247 20 C 0.402 3.598 21 O -0.398 6.398 22 N -0.344 5.344 23 C 0.005 3.995 24 C -0.222 4.222 25 C -0.229 4.229 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.158 0.842 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.151 0.849 39 H 0.144 0.856 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.305 -6.482 -14.574 16.116 hybrid contribution -0.026 0.301 0.782 0.838 sum -2.331 -6.181 -13.792 15.293 Atomic orbital electron populations 1.21863 0.93887 1.02521 1.03509 1.21635 0.97340 0.92919 1.03580 1.22181 0.81332 0.99249 0.98739 0.86491 1.20670 0.85015 0.78025 0.85621 1.90739 1.21711 1.53090 1.68428 1.46957 1.06748 1.53864 1.23332 1.21936 1.06100 0.93736 0.74866 1.19254 0.96931 0.84789 0.94561 1.20491 1.33716 1.05681 0.92522 0.91649 1.25047 0.94423 0.96617 0.97490 1.69721 1.26398 1.22122 1.33704 0.86431 0.78801 0.78665 0.83287 1.20540 1.20926 1.19638 1.22999 0.91704 1.08492 1.00445 1.22908 0.94933 1.07011 0.99843 1.15956 0.85298 0.78590 0.79936 1.90918 1.16547 1.59065 1.73270 1.47078 1.05303 1.60926 1.21115 1.21232 0.86019 1.00130 0.92151 1.23632 0.95110 1.00152 1.03329 1.23415 1.03362 0.97281 0.98888 0.92136 0.90384 0.92465 0.90432 0.90793 0.84165 0.90488 0.92353 0.91465 0.90549 0.90622 0.92109 0.84876 0.85580 0.88409 0.88272 0.88375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.78 37.16 0.36 -1.34 16 2 C -0.12 -1.31 5.64 -26.73 -0.15 -1.46 16 3 C 0.09 1.25 3.50 -68.20 -0.24 1.01 16 4 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 5 C 0.52 9.46 5.50 -10.56 -0.06 9.40 16 6 O -0.47 -9.39 15.58 5.60 0.09 -9.30 16 7 N -0.57 -11.69 1.85 -120.73 -0.22 -11.91 16 8 C 0.15 3.71 4.98 -4.04 -0.02 3.69 16 9 C 0.05 1.18 2.37 -155.66 -0.37 0.81 16 10 C -0.49 -13.40 9.05 -34.44 -0.31 -13.71 16 11 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 12 C 0.07 1.82 5.28 -17.82 -0.09 1.73 16 13 N -0.88 -24.54 10.71 55.43 0.59 -23.95 16 14 Si 0.90 20.93 29.55 -169.99 -5.02 15.91 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 17 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 18 C -0.20 -4.82 9.63 -26.70 -0.26 -5.08 16 19 C -0.21 -4.84 9.55 -26.69 -0.26 -5.09 16 20 C 0.70 13.72 6.65 -88.01 -0.59 13.14 16 21 O -0.53 -11.85 13.61 5.33 0.07 -11.78 16 22 N -0.61 -9.00 3.09 -164.83 -0.51 -9.51 16 23 C 0.11 1.25 6.82 -67.93 -0.46 0.79 16 24 C -0.18 -2.30 9.82 -26.70 -0.26 -2.56 16 25 C -0.19 -2.17 10.19 -26.69 -0.27 -2.44 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.08 1.05 5.98 -51.93 -0.31 0.74 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.67 7.82 -51.93 -0.41 0.26 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.14 3.80 5.71 -51.93 -0.30 3.51 16 32 H 0.08 1.93 8.03 -51.93 -0.42 1.52 16 33 H 0.27 7.05 8.32 -40.82 -0.34 6.71 16 34 H 0.07 1.62 5.61 -51.93 -0.29 1.33 16 35 H 0.08 1.87 8.14 -51.92 -0.42 1.45 16 36 H 0.08 1.72 8.14 -51.93 -0.42 1.29 16 37 H 0.06 1.32 5.58 -51.93 -0.29 1.03 16 38 H 0.13 1.08 7.84 -51.93 -0.41 0.68 16 39 H 0.13 2.08 5.78 -51.93 -0.30 1.78 16 40 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 336.26 15.07 5.07 5.07 Total: -1.00 -30.43 336.26 -8.98 -39.41 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -6.07 Total: 7.18 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -2.97 Total: -1.11 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: -0.14 Total: -45.37 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: 0.16 Total: -21.08 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.43 -8.98 -39.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348762507.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.139 kcal (2) G-P(sol) polarization free energy of solvation -30.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.02 seconds