Wall clock time and date at job start Tue Mar 31 2020 06:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47006 * 2 1 4 4 H 1.09000 * 110.65622 * 303.01589 * 3 2 1 5 5 C 1.51581 * 110.59850 * 65.92866 * 3 2 1 6 6 O 1.21235 * 127.15882 * 298.79129 * 5 3 2 7 7 N 1.34769 * 105.68692 * 118.52735 * 5 3 2 8 8 C 1.46500 * 124.18017 * 180.02562 * 7 5 3 9 9 C 1.52995 * 109.47213 * 88.84498 * 8 7 5 10 10 C 1.50698 * 115.55118 * 186.38798 * 9 8 7 11 11 H 1.08000 * 120.00329 * 144.29580 * 10 9 8 12 12 C 1.37879 * 119.99876 * 324.29114 * 10 9 8 13 13 N 1.31512 * 119.99961 * 351.22656 * 12 10 9 14 14 Si 1.86800 * 119.99915 * 171.22196 * 12 10 9 15 15 H 1.48500 * 109.47052 * 90.00590 * 14 12 10 16 16 H 1.48502 * 109.47148 * 209.99997 * 14 12 10 17 17 H 1.48496 * 109.47516 * 330.00473 * 14 12 10 18 18 C 1.52998 * 117.49859 * 40.71441 * 9 8 7 19 19 C 1.53006 * 117.49814 * 332.05748 * 9 8 7 20 20 C 1.33794 * 111.64361 * 359.97438 * 7 5 3 21 21 O 1.21536 * 123.77388 * 179.97438 * 20 7 5 22 22 N 1.34530 * 112.45780 * 0.02562 * 20 7 5 23 23 C 1.46497 * 126.69211 * 179.97438 * 22 20 7 24 24 C 1.52996 * 117.49614 * 15.65436 * 23 22 20 25 25 C 1.53003 * 117.49973 * 306.99484 * 23 22 20 26 26 H 1.09005 * 109.47292 * 183.79016 * 1 2 3 27 27 H 1.08995 * 109.47547 * 303.79528 * 1 2 3 28 28 H 1.09003 * 109.46864 * 63.79538 * 1 2 3 29 29 H 1.09001 * 109.47678 * 239.99778 * 2 1 3 30 30 H 1.09002 * 109.46710 * 119.99566 * 2 1 3 31 31 H 1.08997 * 109.47233 * 208.85081 * 8 7 5 32 32 H 1.09004 * 109.46875 * 328.84427 * 8 7 5 33 33 H 0.96998 * 120.00138 * 185.00451 * 13 12 10 34 34 H 1.09001 * 117.50176 * 0.02562 * 18 9 8 35 35 H 1.09010 * 117.49911 * 145.02044 * 18 9 8 36 36 H 1.09001 * 117.49260 * 214.97947 * 19 9 8 37 37 H 1.08990 * 117.49602 * 359.97438 * 19 9 8 38 38 H 1.08997 * 115.55053 * 161.32199 * 23 22 20 39 39 H 1.09002 * 117.50289 * 359.97438 * 24 23 22 40 40 H 1.09004 * 117.49810 * 145.02112 * 24 23 22 41 41 H 1.08997 * 117.49235 * 214.97731 * 25 23 22 42 42 H 1.09000 * 117.49656 * 359.97297 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6442 1.9903 -0.8552 5 6 1.6721 2.1382 1.2955 6 8 0.5573 2.3436 1.7255 7 7 2.8421 2.4758 1.8729 8 6 2.9556 3.1739 3.1558 9 6 2.9926 2.1501 4.2921 10 6 2.9570 2.7237 5.6852 11 1 2.4279 2.2035 6.4700 12 6 3.6001 3.9124 5.9579 13 7 4.3853 4.4576 5.0547 14 14 3.3558 4.7487 7.6103 15 1 4.3810 4.2617 8.5679 16 1 3.4907 6.2185 7.4460 17 1 2.0018 4.4310 8.1307 18 6 3.8165 0.8798 4.0719 19 6 2.2874 0.8121 4.0607 20 6 3.8873 2.0935 1.1302 21 8 5.0455 2.2876 1.4430 22 7 3.5128 1.4712 -0.0023 23 6 4.3973 0.9282 -1.0362 24 6 5.8718 0.7375 -0.6755 25 6 5.4551 1.8644 -1.6240 26 1 -0.3634 -1.0255 0.0679 27 1 -0.3634 0.5716 0.8540 28 1 -0.3633 0.4538 -0.9221 29 1 1.8934 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 3.8719 3.7641 3.1684 32 1 2.0973 3.8327 3.2881 33 1 4.8941 5.2543 5.2717 34 1 4.3326 0.7737 3.1177 35 1 4.3326 0.4588 4.9348 36 1 1.7980 0.3467 4.9163 37 1 1.7967 0.6616 3.0992 38 1 3.9443 0.1971 -1.7058 39 1 6.1840 1.0165 0.3309 40 1 6.3891 -0.1189 -1.1082 41 1 5.6982 1.7489 -2.6802 42 1 5.4926 2.8845 -1.2417 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348762507.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:48 Heat of formation + Delta-G solvation = 4.432576 kcal Electronic energy + Delta-G solvation = -25155.964578 eV Core-core repulsion = 21717.574917 eV Total energy + Delta-G solvation = -3438.389661 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 3.52 seconds Orbital eigenvalues (eV) -43.56855 -39.91714 -38.96378 -37.64664 -37.14745 -35.32714 -34.29476 -33.01736 -29.02882 -27.86449 -27.33586 -24.53178 -23.99122 -23.30076 -23.10799 -22.02236 -21.32017 -20.44874 -18.89551 -18.17837 -17.90583 -17.36201 -17.12071 -16.72234 -16.04532 -15.92393 -15.61779 -15.37578 -15.12270 -14.53871 -14.35476 -14.11611 -14.10087 -13.84621 -13.52574 -13.00236 -12.87474 -12.83142 -12.72702 -12.46728 -12.40171 -12.26822 -12.18759 -11.93486 -11.86494 -11.53553 -11.27384 -11.10981 -10.89010 -10.82701 -10.45858 -10.10231 -9.65471 -8.16769 -6.30467 0.63449 1.11885 1.40140 1.42384 1.53563 1.96010 2.03593 2.37222 2.90944 2.94456 3.00407 3.48462 3.61014 3.76496 3.91374 4.01602 4.11048 4.12799 4.22362 4.34090 4.41300 4.42202 4.54220 4.58741 4.75484 4.80174 4.82207 4.85040 4.94047 5.06411 5.08227 5.11452 5.17616 5.29722 5.37349 5.39541 5.47124 5.50854 5.60780 5.78728 6.23452 6.28540 6.45461 6.69556 7.14091 7.32794 8.84171 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018673 B = 0.005844 C = 0.004964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.109587 B = 4789.835538 C = 5639.777087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.109 4.109 3 C 0.105 3.895 4 H 0.158 0.842 5 C 0.509 3.491 6 O -0.493 6.493 7 N -0.579 5.579 8 C 0.170 3.830 9 C 0.017 3.983 10 C -0.514 4.514 11 H 0.060 0.940 12 C 0.023 3.977 13 N -0.907 5.907 14 Si 0.966 3.034 15 H -0.274 1.274 16 H -0.278 1.278 17 H -0.267 1.267 18 C -0.193 4.193 19 C -0.185 4.185 20 C 0.690 3.310 21 O -0.567 6.567 22 N -0.593 5.593 23 C 0.107 3.893 24 C -0.199 4.199 25 C -0.182 4.182 26 H 0.076 0.924 27 H 0.043 0.957 28 H 0.080 0.920 29 H 0.122 0.878 30 H 0.051 0.949 31 H 0.109 0.891 32 H 0.058 0.942 33 H 0.267 0.733 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.188 0.812 39 H 0.078 0.922 40 H 0.130 0.870 41 H 0.139 0.861 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.497 -8.634 -17.569 19.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.148 4.148 3 C -0.001 4.001 4 H 0.175 0.825 5 C 0.298 3.702 6 O -0.365 6.365 7 N -0.322 5.322 8 C 0.050 3.950 9 C 0.016 3.984 10 C -0.551 4.551 11 H 0.078 0.922 12 C -0.177 4.177 13 N -0.544 5.544 14 Si 0.791 3.209 15 H -0.200 1.200 16 H -0.203 1.203 17 H -0.191 1.191 18 C -0.231 4.231 19 C -0.222 4.222 20 C 0.393 3.607 21 O -0.443 6.443 22 N -0.329 5.329 23 C 0.006 3.994 24 C -0.237 4.237 25 C -0.220 4.220 26 H 0.095 0.905 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.140 0.860 30 H 0.070 0.930 31 H 0.127 0.873 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.205 0.795 39 H 0.096 0.904 40 H 0.148 0.852 41 H 0.157 0.843 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.333 -8.207 -17.235 19.378 hybrid contribution 0.300 0.816 1.552 1.779 sum -3.034 -7.390 -15.683 17.600 Atomic orbital electron populations 1.21838 0.93288 1.03191 1.03173 1.21702 0.97686 0.90744 1.04628 1.22427 0.80208 1.00819 0.96634 0.82514 1.21567 0.83890 0.77645 0.87108 1.90724 1.22316 1.53922 1.69557 1.46911 1.08527 1.54219 1.22581 1.21240 1.03504 0.93399 0.76884 1.19396 0.98745 0.85782 0.94492 1.20764 1.34306 1.06598 0.93458 0.92184 1.25820 0.93898 0.96957 1.01062 1.69895 1.26844 1.22301 1.35347 0.85419 0.78833 0.77631 0.79025 1.19986 1.20335 1.19112 1.22856 0.92512 1.07813 0.99959 1.22848 0.94004 1.04795 1.00563 1.16185 0.84397 0.79023 0.81132 1.90901 1.18039 1.60815 1.74537 1.47272 1.06461 1.59312 1.19886 1.21921 0.85396 1.00798 0.91288 1.23560 0.96566 1.02019 1.01524 1.23433 1.02905 0.95170 1.00526 0.90548 0.93815 0.90140 0.85996 0.93028 0.87301 0.92403 0.92344 0.91625 0.91305 0.90154 0.90807 0.79513 0.90363 0.85158 0.84306 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.78 71.98 0.70 -2.07 16 2 C -0.11 -2.00 5.64 30.59 0.17 -1.83 16 3 C 0.11 2.51 3.50 44.37 0.16 2.67 16 4 H 0.16 2.67 8.14 -2.39 -0.02 2.65 16 5 C 0.51 18.35 5.50 87.94 0.48 18.84 16 6 O -0.49 -19.87 15.58 -2.89 -0.05 -19.92 16 7 N -0.58 -24.63 1.85 -773.13 -1.43 -26.06 16 8 C 0.17 8.80 4.98 86.38 0.43 9.23 16 9 C 0.02 0.91 2.37 -52.93 -0.13 0.79 16 10 C -0.51 -29.29 9.05 25.60 0.23 -29.06 16 11 H 0.06 3.38 7.83 -2.91 -0.02 3.36 16 12 C 0.02 1.29 5.28 84.66 0.45 1.74 16 13 N -0.91 -52.60 10.71 21.45 0.23 -52.37 16 14 Si 0.97 43.89 29.55 68.60 2.03 45.92 16 15 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 16 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 17 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 18 C -0.19 -9.70 9.63 30.62 0.29 -9.41 16 19 C -0.18 -8.67 9.55 30.62 0.29 -8.37 16 20 C 0.69 27.60 6.65 179.44 1.19 28.79 16 21 O -0.57 -27.01 13.61 -3.83 -0.05 -27.06 16 22 N -0.59 -16.39 3.09 -793.83 -2.45 -18.84 16 23 C 0.11 2.09 6.82 44.99 0.31 2.39 16 24 C -0.20 -4.63 9.82 30.62 0.30 -4.33 16 25 C -0.18 -3.68 10.19 30.62 0.31 -3.37 16 26 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 27 H 0.04 1.10 5.98 -2.39 -0.01 1.08 16 28 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.12 1.26 7.82 -2.39 -0.02 1.24 16 30 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.11 6.33 5.71 -2.39 -0.01 6.32 16 32 H 0.06 3.10 8.03 -2.38 -0.02 3.08 16 33 H 0.27 14.68 8.32 -92.71 -0.77 13.91 16 34 H 0.07 3.30 5.61 -2.39 -0.01 3.28 16 35 H 0.07 3.49 8.14 -2.38 -0.02 3.48 16 36 H 0.08 3.66 8.14 -2.39 -0.02 3.64 16 37 H 0.07 3.23 5.58 -2.39 -0.01 3.22 16 38 H 0.19 1.70 7.84 -2.39 -0.02 1.68 16 39 H 0.08 2.68 5.78 -2.39 -0.01 2.67 16 40 H 0.13 2.12 8.14 -2.38 -0.02 2.11 16 41 H 0.14 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -72.45 336.26 4.50 -67.95 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: 1.03 Total: 24.37 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: 5.20 Total: 6.01 kcal Atomic # 7 Polarization: -93.62 SS G_CDS: -3.65 Total: -97.27 kcal Atomic # 8 Polarization: -46.88 SS G_CDS: -0.10 Total: -46.97 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -72.45 4.50 -67.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348762507.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.380 kcal (2) G-P(sol) polarization free energy of solvation -72.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.52 seconds