Wall clock time and date at job start Tue Mar 31 2020 06:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34224 * 116.99968 * 2 1 4 4 O 1.20830 * 120.00157 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00003 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.47165 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.47526 * 300.00251 * 6 5 3 8 8 N 1.46903 * 109.47559 * 180.02562 * 6 5 3 9 9 C 1.46902 * 110.99362 * 299.41548 * 8 6 5 10 10 C 1.53000 * 109.46950 * 185.68998 * 9 8 6 11 11 C 1.50702 * 109.47309 * 180.02562 * 10 9 8 12 12 H 1.08004 * 119.99860 * 359.97438 * 11 10 9 13 13 C 1.37883 * 120.00021 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99838 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 119.99872 * 359.97438 * 13 11 10 16 16 H 1.48495 * 109.47143 * 90.00305 * 15 13 11 17 17 H 1.48509 * 109.46832 * 210.00287 * 15 13 11 18 18 H 1.48497 * 109.47400 * 330.00025 * 15 13 11 19 19 C 1.50702 * 109.47192 * 60.00429 * 6 5 3 20 20 C 1.38229 * 119.61999 * 181.82026 * 19 6 5 21 21 C 1.38622 * 119.15997 * 179.97438 * 20 19 6 22 22 C 1.38676 * 118.42366 * 359.97438 * 21 20 19 23 23 C 1.38180 * 119.15990 * 359.97438 * 22 21 20 24 24 N 1.31853 * 119.61516 * 1.54171 * 19 6 5 25 25 H 1.08996 * 109.46994 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47213 * 300.00260 * 1 2 3 27 27 H 1.08999 * 109.46954 * 60.00460 * 1 2 3 28 28 H 1.09006 * 109.46938 * 60.00833 * 5 3 2 29 29 H 1.08996 * 109.47407 * 300.00494 * 5 3 2 30 30 H 1.08998 * 109.47048 * 300.00261 * 7 6 5 31 31 H 1.09007 * 109.46791 * 59.99859 * 7 6 5 32 32 H 1.09001 * 109.47205 * 179.97438 * 7 6 5 33 33 H 1.00900 * 111.00174 * 63.36553 * 8 6 5 34 34 H 1.08997 * 109.47355 * 305.68905 * 9 8 6 35 35 H 1.09001 * 109.47410 * 65.69482 * 9 8 6 36 36 H 1.09010 * 109.47255 * 299.99937 * 10 9 8 37 37 H 1.08996 * 109.47239 * 59.99600 * 10 9 8 38 38 H 0.96995 * 119.99700 * 179.97438 * 14 13 11 39 39 H 1.08007 * 120.41879 * 359.97438 * 20 19 6 40 40 H 1.07999 * 120.79074 * 180.02562 * 21 20 19 41 41 H 1.07999 * 120.41501 * 180.02562 * 22 21 20 42 42 H 1.08004 * 119.61662 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7420 0.0011 7 6 3.4535 3.4360 -1.2481 8 7 5.4671 2.8190 0.0011 9 6 6.0280 2.1735 1.1955 10 6 7.5413 2.3964 1.2325 11 6 8.1169 1.7336 2.4575 12 1 7.4682 1.2065 3.1414 13 6 9.4715 1.8011 2.7056 14 7 9.9738 1.2232 3.7748 15 14 10.5933 2.7134 1.5229 16 1 10.6985 4.1354 1.9377 17 1 11.9418 2.0916 1.5405 18 1 10.0316 2.6384 0.1503 19 6 3.4609 3.4249 1.2316 20 6 3.6979 4.7730 1.4240 21 6 3.1970 5.3916 2.5590 22 6 2.4727 4.6278 3.4618 23 6 2.2753 3.2852 3.2017 24 7 2.7638 2.7306 2.1094 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.9564 0.7806 -0.8893 29 1 3.9557 0.7809 0.8907 30 1 3.8435 2.9421 -2.1381 31 1 2.3649 3.3789 -1.2485 32 1 3.7622 4.4814 -1.2475 33 1 5.8503 2.4166 -0.8411 34 1 5.5753 2.6049 2.0882 35 1 5.8191 1.1042 1.1626 36 1 7.9941 1.9649 0.3397 37 1 7.7503 3.4656 1.2653 38 1 10.9268 1.2704 3.9492 39 1 4.2662 5.3373 0.6993 40 1 3.3661 6.4436 2.7355 41 1 2.0674 5.0770 4.3565 42 1 1.7127 2.6833 3.9001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351819854.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:04 Heat of formation + Delta-G solvation = -41.358182 kcal Electronic energy + Delta-G solvation = -24203.452799 eV Core-core repulsion = 20763.077502 eV Total energy + Delta-G solvation = -3440.375297 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 3.20 seconds Orbital eigenvalues (eV) -40.96536 -39.73452 -37.49715 -36.13011 -33.60450 -32.27454 -31.83166 -30.42983 -29.32278 -28.30326 -27.02658 -24.09625 -23.68944 -23.13251 -21.35817 -20.38062 -19.67143 -17.64307 -17.03638 -16.64838 -16.48231 -16.12613 -15.89569 -15.24099 -15.06800 -14.37393 -14.14934 -13.98379 -13.69549 -13.36632 -13.30365 -12.93785 -12.75240 -12.51353 -12.35134 -12.10886 -12.00534 -11.63932 -11.46152 -11.39052 -11.02295 -10.92435 -10.69302 -10.29416 -10.10776 -9.80006 -9.73223 -9.59865 -9.25105 -9.22253 -8.70804 -8.53062 -8.12014 -6.03418 -4.01794 1.36628 1.53753 2.45255 2.83258 3.33015 3.39919 3.44161 3.99830 4.23551 4.46608 4.48415 4.78759 4.87664 5.01445 5.04367 5.08471 5.12413 5.27833 5.29749 5.31077 5.38269 5.46628 5.50174 5.67236 5.72117 5.92071 5.92381 5.98863 6.12678 6.20971 6.29544 6.39025 6.42286 6.58377 6.76193 6.92034 7.05705 7.35644 7.49634 7.68474 7.85237 7.96215 8.23421 8.54001 9.00930 9.58726 11.10007 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016309 B = 0.004673 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.426995 B = 5990.435728 C = 6548.731136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.365 6.365 3 C 0.484 3.516 4 O -0.500 6.500 5 C -0.135 4.135 6 C 0.176 3.824 7 C -0.150 4.150 8 N -0.673 5.673 9 C 0.070 3.930 10 C -0.007 4.007 11 C -0.520 4.520 12 H 0.070 0.930 13 C 0.068 3.932 14 N -0.904 5.904 15 Si 0.882 3.118 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.265 1.265 19 C 0.167 3.833 20 C -0.142 4.142 21 C -0.079 4.079 22 C -0.180 4.180 23 C 0.100 3.900 24 N -0.480 5.480 25 H 0.095 0.905 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.100 0.900 29 H 0.116 0.884 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.344 0.656 34 H 0.064 0.936 35 H 0.029 0.971 36 H 0.015 0.985 37 H 0.020 0.980 38 H 0.263 0.737 39 H 0.136 0.864 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.566 3.429 -8.317 20.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.282 6.282 3 C 0.327 3.673 4 O -0.388 6.388 5 C -0.175 4.175 6 C 0.083 3.917 7 C -0.208 4.208 8 N -0.304 5.304 9 C -0.058 4.058 10 C -0.045 4.045 11 C -0.559 4.559 12 H 0.088 0.912 13 C -0.134 4.134 14 N -0.543 5.543 15 Si 0.710 3.290 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.189 1.189 19 C 0.028 3.972 20 C -0.163 4.163 21 C -0.105 4.105 22 C -0.200 4.200 23 C -0.057 4.057 24 N -0.189 5.189 25 H 0.114 0.886 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.118 0.882 29 H 0.134 0.866 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.163 0.837 34 H 0.082 0.918 35 H 0.047 0.953 36 H 0.033 0.967 37 H 0.038 0.962 38 H 0.073 0.927 39 H 0.154 0.846 40 H 0.148 0.852 41 H 0.146 0.854 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -18.740 3.443 -8.100 20.704 hybrid contribution 0.558 0.408 -0.283 0.747 sum -18.182 3.851 -8.384 20.389 Atomic orbital electron populations 1.23143 0.77087 1.03102 1.02163 1.86518 1.22878 1.34174 1.84585 1.23340 0.91668 0.80969 0.71326 1.90547 1.67083 1.35961 1.45163 1.22147 0.88619 1.00792 1.05901 1.19555 0.89086 0.90387 0.92666 1.22138 1.02858 1.01103 0.94667 1.60857 1.01461 1.61323 1.06754 1.22041 0.97609 0.95395 0.90756 1.19517 0.90410 0.97157 0.97382 1.21053 0.93327 1.34194 1.07293 0.91209 1.24999 0.98121 0.95117 0.95123 1.69918 1.13028 1.44610 1.26714 0.86742 0.79862 0.80127 0.82311 1.20318 1.21529 1.18918 1.20553 0.92304 0.90853 0.93446 1.21797 1.00109 0.95709 0.98641 1.21522 0.95250 1.00167 0.93562 1.22009 1.01499 0.95783 1.00727 1.22513 0.96703 0.92750 0.93755 1.67283 1.09023 1.39985 1.02624 0.88619 0.92119 0.92380 0.88206 0.86609 0.92388 0.89814 0.91416 0.83671 0.91782 0.95301 0.96705 0.96174 0.92749 0.84631 0.85219 0.85362 0.83488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.56 101.05 1.07 1.45 16 2 O -0.36 -4.82 10.57 -39.24 -0.41 -5.23 16 3 C 0.48 6.95 6.53 36.00 0.24 7.18 16 4 O -0.50 -7.86 11.56 -18.75 -0.22 -8.08 16 5 C -0.13 -1.88 4.26 -27.89 -0.12 -2.00 16 6 C 0.18 2.54 0.51 -132.75 -0.07 2.47 16 7 C -0.15 -1.87 8.23 37.16 0.31 -1.56 16 8 N -0.67 -10.71 5.93 -101.13 -0.60 -11.31 16 9 C 0.07 1.39 4.87 -3.82 -0.02 1.37 16 10 C -0.01 -0.16 4.35 -27.88 -0.12 -0.28 16 11 C -0.52 -14.90 9.66 -34.44 -0.33 -15.23 16 12 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 13 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 14 N -0.90 -28.04 13.96 55.43 0.77 -27.26 16 15 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 18 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 19 C 0.17 2.66 3.13 -82.59 -0.26 2.40 16 20 C -0.14 -2.13 9.11 -39.44 -0.36 -2.49 16 21 C -0.08 -1.05 10.18 -39.28 -0.40 -1.45 16 22 C -0.18 -2.32 10.11 -39.44 -0.40 -2.72 16 23 C 0.10 1.44 11.18 -17.55 -0.20 1.24 16 24 N -0.48 -7.85 7.10 -9.47 -0.07 -7.92 16 25 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 27 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 28 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.12 1.80 6.43 -51.93 -0.33 1.47 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 1.14 5.52 -51.93 -0.29 0.85 16 32 H 0.07 0.82 7.27 -51.93 -0.38 0.44 16 33 H 0.34 4.88 8.78 -39.29 -0.35 4.54 16 34 H 0.06 1.40 6.87 -51.93 -0.36 1.04 16 35 H 0.03 0.57 6.63 -51.93 -0.34 0.23 16 36 H 0.01 0.34 7.20 -51.92 -0.37 -0.03 16 37 H 0.02 0.49 7.57 -51.93 -0.39 0.09 16 38 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 39 H 0.14 1.88 7.46 -52.48 -0.39 1.49 16 40 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 41 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 42 H 0.15 1.74 8.06 -52.48 -0.42 1.32 16 LS Contribution 340.40 15.07 5.13 5.13 Total: -1.00 -33.49 340.40 -7.00 -40.49 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -6.17 Total: 4.76 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -0.76 Total: -7.73 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 0.11 Total: -46.50 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -0.63 Total: -13.31 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.49 -7.00 -40.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351819854.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.872 kcal (2) G-P(sol) polarization free energy of solvation -33.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.20 seconds