Wall clock time and date at job start Tue Mar 31 2020 06:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34224 * 116.99968 * 2 1 4 4 O 1.20830 * 120.00157 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00003 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.47165 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.47526 * 300.00251 * 6 5 3 8 8 N 1.46903 * 109.47559 * 180.02562 * 6 5 3 9 9 C 1.46902 * 110.99362 * 299.41548 * 8 6 5 10 10 C 1.53000 * 109.46950 * 185.68998 * 9 8 6 11 11 C 1.50702 * 109.47309 * 180.02562 * 10 9 8 12 12 H 1.08004 * 119.99860 * 359.97438 * 11 10 9 13 13 C 1.37883 * 120.00021 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99838 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 119.99872 * 359.97438 * 13 11 10 16 16 H 1.48495 * 109.47143 * 90.00305 * 15 13 11 17 17 H 1.48509 * 109.46832 * 210.00287 * 15 13 11 18 18 H 1.48497 * 109.47400 * 330.00025 * 15 13 11 19 19 C 1.50702 * 109.47192 * 60.00429 * 6 5 3 20 20 C 1.38229 * 119.61999 * 181.82026 * 19 6 5 21 21 C 1.38622 * 119.15997 * 179.97438 * 20 19 6 22 22 C 1.38676 * 118.42366 * 359.97438 * 21 20 19 23 23 C 1.38180 * 119.15990 * 359.97438 * 22 21 20 24 24 N 1.31853 * 119.61516 * 1.54171 * 19 6 5 25 25 H 1.08996 * 109.46994 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47213 * 300.00260 * 1 2 3 27 27 H 1.08999 * 109.46954 * 60.00460 * 1 2 3 28 28 H 1.09006 * 109.46938 * 60.00833 * 5 3 2 29 29 H 1.08996 * 109.47407 * 300.00494 * 5 3 2 30 30 H 1.08998 * 109.47048 * 300.00261 * 7 6 5 31 31 H 1.09007 * 109.46791 * 59.99859 * 7 6 5 32 32 H 1.09001 * 109.47205 * 179.97438 * 7 6 5 33 33 H 1.00900 * 111.00174 * 63.36553 * 8 6 5 34 34 H 1.08997 * 109.47355 * 305.68905 * 9 8 6 35 35 H 1.09001 * 109.47410 * 65.69482 * 9 8 6 36 36 H 1.09010 * 109.47255 * 299.99937 * 10 9 8 37 37 H 1.08996 * 109.47239 * 59.99600 * 10 9 8 38 38 H 0.96995 * 119.99700 * 179.97438 * 14 13 11 39 39 H 1.08007 * 120.41879 * 359.97438 * 20 19 6 40 40 H 1.07999 * 120.79074 * 180.02562 * 21 20 19 41 41 H 1.07999 * 120.41501 * 180.02562 * 22 21 20 42 42 H 1.08004 * 119.61662 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7420 0.0011 7 6 3.4535 3.4360 -1.2481 8 7 5.4671 2.8190 0.0011 9 6 6.0280 2.1735 1.1955 10 6 7.5413 2.3964 1.2325 11 6 8.1169 1.7336 2.4575 12 1 7.4682 1.2065 3.1414 13 6 9.4715 1.8011 2.7056 14 7 9.9738 1.2232 3.7748 15 14 10.5933 2.7134 1.5229 16 1 10.6985 4.1354 1.9377 17 1 11.9418 2.0916 1.5405 18 1 10.0316 2.6384 0.1503 19 6 3.4609 3.4249 1.2316 20 6 3.6979 4.7730 1.4240 21 6 3.1970 5.3916 2.5590 22 6 2.4727 4.6278 3.4618 23 6 2.2753 3.2852 3.2017 24 7 2.7638 2.7306 2.1094 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.9564 0.7806 -0.8893 29 1 3.9557 0.7809 0.8907 30 1 3.8435 2.9421 -2.1381 31 1 2.3649 3.3789 -1.2485 32 1 3.7622 4.4814 -1.2475 33 1 5.8503 2.4166 -0.8411 34 1 5.5753 2.6049 2.0882 35 1 5.8191 1.1042 1.1626 36 1 7.9941 1.9649 0.3397 37 1 7.7503 3.4656 1.2653 38 1 10.9268 1.2704 3.9492 39 1 4.2662 5.3373 0.6993 40 1 3.3661 6.4436 2.7355 41 1 2.0674 5.0770 4.3565 42 1 1.7127 2.6833 3.9001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351819854.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:02 Heat of formation + Delta-G solvation = -63.829495 kcal Electronic energy + Delta-G solvation = -24204.427228 eV Core-core repulsion = 20763.077502 eV Total energy + Delta-G solvation = -3441.349726 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -42.05997 -40.79555 -38.66891 -37.27260 -35.46969 -33.71551 -33.26940 -31.54313 -30.72326 -29.60347 -27.91905 -25.85595 -24.86982 -24.20246 -22.43267 -22.22501 -20.79488 -19.04314 -18.61002 -17.99525 -17.54853 -17.16440 -16.95302 -16.60723 -16.27425 -16.12170 -15.43082 -15.28593 -14.95411 -14.64662 -14.43103 -14.39576 -14.09882 -13.78211 -13.61588 -13.32958 -13.03317 -12.91849 -12.87785 -12.69451 -12.45272 -12.08955 -12.00344 -11.75256 -11.67335 -11.61824 -11.40915 -11.16120 -10.75515 -10.68129 -10.34820 -9.80388 -9.46114 -8.28181 -6.32999 0.29002 0.47303 1.36056 1.39610 1.40794 1.53595 1.86095 2.38555 2.87728 3.07802 3.13330 3.34610 3.65119 3.82895 4.01718 4.10959 4.23664 4.30922 4.32470 4.33508 4.35771 4.36550 4.46486 4.55101 4.68633 4.70285 4.72649 4.90302 4.90872 4.97826 4.98330 5.26112 5.27207 5.35624 5.36244 5.50634 5.56853 5.64659 5.87791 5.99553 6.26312 6.50621 6.75357 6.89894 7.13974 7.31741 8.88869 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016309 B = 0.004673 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.426995 B = 5990.435728 C = 6548.731136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.374 6.374 3 C 0.486 3.514 4 O -0.516 6.516 5 C -0.134 4.134 6 C 0.177 3.823 7 C -0.141 4.141 8 N -0.664 5.664 9 C 0.091 3.909 10 C 0.000 4.000 11 C -0.532 4.532 12 H 0.024 0.976 13 C 0.005 3.995 14 N -0.953 5.953 15 Si 0.956 3.044 16 H -0.270 1.270 17 H -0.285 1.285 18 H -0.240 1.240 19 C 0.143 3.857 20 C -0.160 4.160 21 C -0.085 4.085 22 C -0.178 4.178 23 C 0.077 3.923 24 N -0.505 5.505 25 H 0.126 0.874 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.124 0.876 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.358 0.642 34 H 0.039 0.961 35 H 0.023 0.977 36 H 0.028 0.972 37 H 0.021 0.979 38 H 0.266 0.734 39 H 0.143 0.857 40 H 0.159 0.841 41 H 0.159 0.841 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.847 4.667 -10.315 21.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.291 6.291 3 C 0.329 3.671 4 O -0.405 6.405 5 C -0.174 4.174 6 C 0.084 3.916 7 C -0.198 4.198 8 N -0.297 5.297 9 C -0.038 4.038 10 C -0.038 4.038 11 C -0.571 4.571 12 H 0.043 0.957 13 C -0.191 4.191 14 N -0.594 5.594 15 Si 0.779 3.221 16 H -0.195 1.195 17 H -0.211 1.211 18 H -0.163 1.163 19 C 0.006 3.994 20 C -0.180 4.180 21 C -0.110 4.110 22 C -0.198 4.198 23 C -0.080 4.080 24 N -0.214 5.214 25 H 0.144 0.856 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.142 0.858 29 H 0.112 0.888 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.178 0.822 34 H 0.058 0.942 35 H 0.042 0.958 36 H 0.046 0.954 37 H 0.039 0.961 38 H 0.075 0.925 39 H 0.161 0.839 40 H 0.176 0.824 41 H 0.177 0.823 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -19.053 4.671 -10.120 22.073 hybrid contribution 0.514 -0.035 0.454 0.687 sum -18.538 4.635 -9.665 21.414 Atomic orbital electron populations 1.23415 0.75220 1.05154 1.02145 1.86497 1.24765 1.33569 1.84285 1.23317 0.91749 0.81048 0.70937 1.90537 1.67459 1.36495 1.45972 1.22108 0.88766 1.00530 1.05990 1.19616 0.87731 0.90860 0.93350 1.22052 1.02075 1.01382 0.94326 1.60686 1.02646 1.60663 1.05665 1.21572 0.95238 0.95175 0.91809 1.19397 0.92692 0.96415 0.95303 1.21380 0.93264 1.34013 1.08416 0.95723 1.26018 0.99983 0.96057 0.97079 1.70079 1.13679 1.46513 1.29101 0.85580 0.77323 0.78576 0.80656 1.19497 1.21114 1.16331 1.20840 0.92975 0.91572 0.94058 1.22032 1.00677 0.95651 0.99648 1.21939 0.94525 1.01646 0.92924 1.22369 1.00691 0.95180 1.01568 1.22980 0.97107 0.94042 0.93827 1.67263 1.09848 1.40857 1.03470 0.85599 0.92809 0.91734 0.85778 0.88751 0.90200 0.90817 0.90971 0.82152 0.94192 0.95844 0.95402 0.96076 0.92500 0.83931 0.82380 0.82294 0.81891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.56 113.37 1.20 1.82 16 2 O -0.37 -9.62 10.57 -51.36 -0.54 -10.17 16 3 C 0.49 13.71 6.53 71.24 0.47 14.18 16 4 O -0.52 -16.02 11.56 21.95 0.25 -15.77 16 5 C -0.13 -3.66 4.26 29.85 0.13 -3.54 16 6 C 0.18 4.94 0.51 2.78 0.00 4.94 16 7 C -0.14 -3.24 8.23 71.98 0.59 -2.65 16 8 N -0.66 -20.17 5.93 -473.88 -2.81 -22.98 16 9 C 0.09 3.62 4.87 86.30 0.42 4.04 16 10 C 0.00 -0.01 4.35 29.85 0.13 0.12 16 11 C -0.53 -31.15 9.66 25.60 0.25 -30.90 16 12 H 0.02 1.61 7.99 -2.91 -0.02 1.58 16 13 C 0.01 0.31 5.47 84.66 0.46 0.77 16 14 N -0.95 -60.51 13.96 21.45 0.30 -60.21 16 15 Si 0.96 44.33 27.47 68.60 1.88 46.21 16 16 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 17 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 18 H -0.24 -10.13 6.54 99.48 0.65 -9.48 16 19 C 0.14 4.54 3.13 42.55 0.13 4.67 16 20 C -0.16 -4.65 9.11 22.36 0.20 -4.44 16 21 C -0.08 -2.12 10.18 22.47 0.23 -1.89 16 22 C -0.18 -4.37 10.11 22.36 0.23 -4.14 16 23 C 0.08 2.21 11.18 84.67 0.95 3.16 16 24 N -0.50 -16.70 7.10 -183.88 -1.31 -18.00 16 25 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.05 1.06 8.13 -2.39 -0.02 1.04 16 27 H 0.06 1.10 8.13 -2.39 -0.02 1.08 16 28 H 0.12 2.67 8.14 -2.38 -0.02 2.65 16 29 H 0.09 3.01 6.43 -2.39 -0.02 2.99 16 30 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.07 1.90 5.52 -2.38 -0.01 1.89 16 32 H 0.07 1.59 7.27 -2.39 -0.02 1.57 16 33 H 0.36 9.22 8.78 -89.69 -0.79 8.43 16 34 H 0.04 1.78 6.87 -2.39 -0.02 1.77 16 35 H 0.02 0.95 6.63 -2.39 -0.02 0.93 16 36 H 0.03 1.23 7.20 -2.38 -0.02 1.21 16 37 H 0.02 0.98 7.57 -2.39 -0.02 0.96 16 38 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 39 H 0.14 3.78 7.46 -2.91 -0.02 3.76 16 40 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 41 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 42 H 0.16 3.85 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -74.07 340.40 3.34 -70.73 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 0.18 Total: 24.05 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: 5.38 Total: -13.86 kcal Atomic # 7 Polarization: -97.37 SS G_CDS: -3.82 Total: -101.19 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.29 Total: -25.94 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.88 Total: 46.21 kcal Total: -74.07 3.34 -70.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351819854.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.896 kcal (2) G-P(sol) polarization free energy of solvation -74.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds