Wall clock time and date at job start Tue Mar 31 2020 06:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34223 * 117.00667 * 2 1 4 4 O 1.20838 * 119.99608 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00405 * 179.97438 * 3 2 1 6 6 C 1.53007 * 109.47390 * 179.97438 * 5 3 2 7 7 C 1.53007 * 109.46728 * 60.00122 * 6 5 3 8 8 N 1.46893 * 109.47357 * 180.02562 * 6 5 3 9 9 C 1.46901 * 110.99953 * 65.05880 * 8 6 5 10 10 C 1.53006 * 109.47171 * 184.66642 * 9 8 6 11 11 C 1.50700 * 109.46990 * 180.02562 * 10 9 8 12 12 H 1.07999 * 120.00022 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99750 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00204 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99711 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47089 * 60.00516 * 15 13 11 17 17 H 1.48505 * 109.46759 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47234 * 299.99805 * 15 13 11 19 19 C 1.50697 * 109.46959 * 300.00540 * 6 5 3 20 20 C 1.38233 * 119.61515 * 177.82715 * 19 6 5 21 21 C 1.38634 * 119.15838 * 179.74369 * 20 19 6 22 22 C 1.38672 * 118.41987 * 0.47318 * 21 20 19 23 23 C 1.38182 * 119.16374 * 359.50472 * 22 21 20 24 24 N 1.31848 * 119.62230 * 357.79811 * 19 6 5 25 25 H 1.09001 * 109.47843 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47245 * 299.99943 * 1 2 3 27 27 H 1.09000 * 109.47113 * 59.99836 * 1 2 3 28 28 H 1.09006 * 109.47079 * 60.00259 * 5 3 2 29 29 H 1.08993 * 109.47481 * 299.99950 * 5 3 2 30 30 H 1.09001 * 109.46889 * 299.99683 * 7 6 5 31 31 H 1.08994 * 109.47015 * 60.00091 * 7 6 5 32 32 H 1.08995 * 109.46883 * 180.02562 * 7 6 5 33 33 H 1.00896 * 111.00342 * 189.00996 * 8 6 5 34 34 H 1.08996 * 109.47214 * 304.66689 * 9 8 6 35 35 H 1.09006 * 109.47103 * 64.67241 * 9 8 6 36 36 H 1.08996 * 109.47091 * 300.00123 * 10 9 8 37 37 H 1.08997 * 109.46563 * 60.00379 * 10 9 8 38 38 H 0.96995 * 120.00186 * 180.02562 * 14 13 11 39 39 H 1.07994 * 120.42229 * 359.95364 * 20 19 6 40 40 H 1.07995 * 120.78597 * 180.22972 * 21 20 19 41 41 H 1.08000 * 120.41944 * 179.78161 * 22 21 20 42 42 H 1.08002 * 119.61657 * 180.25661 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2747 0.0006 6 6 4.0003 2.7419 -0.0002 7 6 3.4527 3.4363 1.2485 8 7 5.4672 2.8187 -0.0002 9 6 6.0231 2.2680 -1.2435 10 6 7.5508 2.2580 -1.1586 11 6 8.1211 1.6937 -2.4343 12 1 7.4601 1.3746 -3.2265 13 6 9.4867 1.5848 -2.5899 14 7 10.2916 1.9730 -1.6250 15 14 10.1936 0.8847 -4.1709 16 1 9.7676 1.7253 -5.3185 17 1 11.6763 0.8739 -4.0880 18 1 9.6990 -0.5023 -4.3627 19 6 3.4619 3.4243 -1.2312 20 6 3.6929 4.7740 -1.4203 21 6 3.1979 5.3910 -2.5589 22 6 2.4773 4.6261 -3.4637 23 6 2.2868 3.2817 -3.2075 24 7 2.7765 2.7270 -2.1158 25 1 -0.3635 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 3.9564 0.7804 -0.8892 29 1 3.9557 0.7808 0.8907 30 1 2.3642 3.3793 1.2480 31 1 3.8420 2.9427 2.1388 32 1 3.7615 4.4816 1.2477 33 1 5.7797 3.7667 0.1468 34 1 5.6604 1.2499 -1.3841 35 1 5.7102 2.8849 -2.0860 36 1 7.9136 3.2762 -1.0180 37 1 7.8637 1.6412 -0.3162 38 1 11.2523 1.8968 -1.7347 39 1 4.2549 5.3399 -0.6921 40 1 3.3661 6.4431 -2.7348 41 1 2.0739 5.0746 -4.3596 42 1 1.7303 2.6782 -3.9094 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351819855.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:14 Heat of formation + Delta-G solvation = -45.235641 kcal Electronic energy + Delta-G solvation = -24165.545232 eV Core-core repulsion = 20725.001795 eV Total energy + Delta-G solvation = -3440.543436 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.78 seconds Orbital eigenvalues (eV) -40.96279 -39.76717 -37.36902 -36.07330 -33.56843 -32.37287 -31.69376 -30.43077 -29.18901 -27.92429 -27.01990 -24.14494 -23.58257 -23.20116 -21.43752 -20.55787 -19.43131 -17.71965 -17.06998 -16.44699 -16.30244 -16.11201 -15.92337 -15.16336 -14.78207 -14.42797 -14.34367 -14.14174 -13.82353 -13.31723 -13.07330 -12.84450 -12.82164 -12.34733 -12.11108 -12.00942 -11.94377 -11.56867 -11.39057 -11.18538 -10.99509 -10.73238 -10.65331 -10.55894 -10.10828 -9.93586 -9.69378 -9.42337 -9.29339 -9.16758 -8.79696 -8.34311 -8.02521 -5.98908 -4.01241 1.27177 1.44762 2.51326 2.85861 3.34231 3.38441 3.41168 3.96008 4.33746 4.42378 4.58879 4.77072 4.90117 4.96664 5.07512 5.08095 5.15099 5.21844 5.29708 5.31896 5.37247 5.51224 5.61728 5.76614 5.78252 5.91658 5.97584 6.00895 6.24077 6.26856 6.29230 6.32597 6.42946 6.64946 6.83606 6.97659 7.35204 7.68148 7.75234 7.90143 8.01857 8.06681 8.17896 8.43846 9.05452 9.62472 11.12428 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.015458 B = 0.004528 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.925539 B = 6181.815055 C = 6681.992056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.363 6.363 3 C 0.482 3.518 4 O -0.505 6.505 5 C -0.090 4.090 6 C 0.173 3.827 7 C -0.151 4.151 8 N -0.666 5.666 9 C 0.062 3.938 10 C 0.028 3.972 11 C -0.521 4.521 12 H 0.052 0.948 13 C 0.060 3.940 14 N -0.893 5.893 15 Si 0.891 3.109 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.276 1.276 19 C 0.134 3.866 20 C -0.168 4.168 21 C -0.072 4.072 22 C -0.183 4.183 23 C 0.103 3.897 24 N -0.474 5.474 25 H 0.095 0.905 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.114 0.886 29 H 0.110 0.890 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.343 0.657 34 H 0.063 0.937 35 H 0.017 0.983 36 H 0.013 0.987 37 H 0.027 0.973 38 H 0.261 0.739 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.119 2.686 2.687 19.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.280 6.280 3 C 0.325 3.675 4 O -0.392 6.392 5 C -0.128 4.128 6 C 0.080 3.920 7 C -0.209 4.209 8 N -0.297 5.297 9 C -0.065 4.065 10 C -0.009 4.009 11 C -0.559 4.559 12 H 0.070 0.930 13 C -0.142 4.142 14 N -0.532 5.532 15 Si 0.719 3.281 16 H -0.204 1.204 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.006 4.006 20 C -0.188 4.188 21 C -0.098 4.098 22 C -0.204 4.204 23 C -0.054 4.054 24 N -0.183 5.183 25 H 0.114 0.886 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.132 0.868 29 H 0.128 0.872 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.162 0.838 34 H 0.081 0.919 35 H 0.035 0.965 36 H 0.031 0.969 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -19.192 1.514 3.248 19.523 hybrid contribution 0.213 1.399 -1.940 2.402 sum -18.979 2.913 1.308 19.246 Atomic orbital electron populations 1.23136 0.77152 1.03079 1.02111 1.86511 1.22783 1.34069 1.84590 1.23472 0.91933 0.80910 0.71191 1.90543 1.67243 1.35997 1.45416 1.21200 0.87090 0.98010 1.06506 1.19669 0.89029 0.92468 0.90843 1.22159 1.02927 1.00009 0.95790 1.60901 1.03119 1.26584 1.39101 1.22261 0.99025 0.98151 0.87095 1.19038 0.87149 0.97361 0.97354 1.21112 0.91542 1.41849 1.01446 0.92952 1.24971 0.97195 0.95555 0.96460 1.69957 1.03386 1.47596 1.32297 0.86674 0.77862 0.79711 0.83850 1.20368 1.21249 1.20184 1.21941 0.92268 0.91096 0.95299 1.21798 1.02097 0.95855 0.99020 1.21475 0.94932 1.00114 0.93287 1.22010 1.01687 0.95830 1.00824 1.22611 0.96190 0.92707 0.93934 1.67408 1.08673 1.39814 1.02424 0.88611 0.92360 0.92236 0.86830 0.87154 0.89822 0.91278 0.92494 0.83848 0.91871 0.96482 0.96853 0.95499 0.92949 0.85268 0.85196 0.85322 0.83444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.56 101.05 1.07 1.46 16 2 O -0.36 -4.88 10.56 -39.24 -0.41 -5.29 16 3 C 0.48 7.09 6.54 36.00 0.24 7.33 16 4 O -0.50 -8.07 11.58 -18.76 -0.22 -8.29 16 5 C -0.09 -1.34 4.40 -27.88 -0.12 -1.46 16 6 C 0.17 2.61 0.54 -132.75 -0.07 2.54 16 7 C -0.15 -1.99 8.17 37.16 0.30 -1.68 16 8 N -0.67 -11.40 6.03 -101.13 -0.61 -12.01 16 9 C 0.06 1.30 4.96 -3.82 -0.02 1.29 16 10 C 0.03 0.73 5.27 -27.88 -0.15 0.59 16 11 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 12 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 13 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 14 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 15 Si 0.89 21.79 29.54 -169.99 -5.02 16.76 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 C 0.13 2.12 3.07 -82.59 -0.25 1.87 16 20 C -0.17 -2.42 8.90 -39.44 -0.35 -2.77 16 21 C -0.07 -0.93 10.18 -39.27 -0.40 -1.33 16 22 C -0.18 -2.30 10.11 -39.44 -0.40 -2.70 16 23 C 0.10 1.45 11.18 -17.55 -0.20 1.25 16 24 N -0.47 -7.71 7.15 -9.47 -0.07 -7.78 16 25 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 27 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 28 H 0.11 1.85 6.31 -51.93 -0.33 1.52 16 29 H 0.11 1.49 8.14 -51.93 -0.42 1.06 16 30 H 0.08 1.18 5.52 -51.93 -0.29 0.89 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.68 7.25 -51.93 -0.38 0.30 16 33 H 0.34 5.58 8.31 -39.29 -0.33 5.25 16 34 H 0.06 1.34 6.23 -51.93 -0.32 1.01 16 35 H 0.02 0.37 7.11 -51.93 -0.37 0.00 16 36 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.13 1.64 7.27 -52.49 -0.38 1.26 16 40 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 41 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 42 H 0.15 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 343.11 15.07 5.17 5.17 Total: -1.00 -32.70 343.11 -7.35 -40.04 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -6.16 Total: 4.57 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -0.76 Total: -7.11 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: 0.06 Total: -45.87 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -0.63 Total: -13.58 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.70 -7.35 -40.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351819855.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.192 kcal (2) G-P(sol) polarization free energy of solvation -32.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.78 seconds