Wall clock time and date at job start Tue Mar 31 2020 06:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34223 * 117.00667 * 2 1 4 4 O 1.20838 * 119.99608 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00405 * 179.97438 * 3 2 1 6 6 C 1.53007 * 109.47390 * 179.97438 * 5 3 2 7 7 C 1.53007 * 109.46728 * 60.00122 * 6 5 3 8 8 N 1.46893 * 109.47357 * 180.02562 * 6 5 3 9 9 C 1.46901 * 110.99953 * 65.05880 * 8 6 5 10 10 C 1.53006 * 109.47171 * 184.66642 * 9 8 6 11 11 C 1.50700 * 109.46990 * 180.02562 * 10 9 8 12 12 H 1.07999 * 120.00022 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99750 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00204 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99711 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47089 * 60.00516 * 15 13 11 17 17 H 1.48505 * 109.46759 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47234 * 299.99805 * 15 13 11 19 19 C 1.50697 * 109.46959 * 300.00540 * 6 5 3 20 20 C 1.38233 * 119.61515 * 177.82715 * 19 6 5 21 21 C 1.38634 * 119.15838 * 179.74369 * 20 19 6 22 22 C 1.38672 * 118.41987 * 0.47318 * 21 20 19 23 23 C 1.38182 * 119.16374 * 359.50472 * 22 21 20 24 24 N 1.31848 * 119.62230 * 357.79811 * 19 6 5 25 25 H 1.09001 * 109.47843 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47245 * 299.99943 * 1 2 3 27 27 H 1.09000 * 109.47113 * 59.99836 * 1 2 3 28 28 H 1.09006 * 109.47079 * 60.00259 * 5 3 2 29 29 H 1.08993 * 109.47481 * 299.99950 * 5 3 2 30 30 H 1.09001 * 109.46889 * 299.99683 * 7 6 5 31 31 H 1.08994 * 109.47015 * 60.00091 * 7 6 5 32 32 H 1.08995 * 109.46883 * 180.02562 * 7 6 5 33 33 H 1.00896 * 111.00342 * 189.00996 * 8 6 5 34 34 H 1.08996 * 109.47214 * 304.66689 * 9 8 6 35 35 H 1.09006 * 109.47103 * 64.67241 * 9 8 6 36 36 H 1.08996 * 109.47091 * 300.00123 * 10 9 8 37 37 H 1.08997 * 109.46563 * 60.00379 * 10 9 8 38 38 H 0.96995 * 120.00186 * 180.02562 * 14 13 11 39 39 H 1.07994 * 120.42229 * 359.95364 * 20 19 6 40 40 H 1.07995 * 120.78597 * 180.22972 * 21 20 19 41 41 H 1.08000 * 120.41944 * 179.78161 * 22 21 20 42 42 H 1.08002 * 119.61657 * 180.25661 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2747 0.0006 6 6 4.0003 2.7419 -0.0002 7 6 3.4527 3.4363 1.2485 8 7 5.4672 2.8187 -0.0002 9 6 6.0231 2.2680 -1.2435 10 6 7.5508 2.2580 -1.1586 11 6 8.1211 1.6937 -2.4343 12 1 7.4601 1.3746 -3.2265 13 6 9.4867 1.5848 -2.5899 14 7 10.2916 1.9730 -1.6250 15 14 10.1936 0.8847 -4.1709 16 1 9.7676 1.7253 -5.3185 17 1 11.6763 0.8739 -4.0880 18 1 9.6990 -0.5023 -4.3627 19 6 3.4619 3.4243 -1.2312 20 6 3.6929 4.7740 -1.4203 21 6 3.1979 5.3910 -2.5589 22 6 2.4773 4.6261 -3.4637 23 6 2.2868 3.2817 -3.2075 24 7 2.7765 2.7270 -2.1158 25 1 -0.3635 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 3.9564 0.7804 -0.8892 29 1 3.9557 0.7808 0.8907 30 1 2.3642 3.3793 1.2480 31 1 3.8420 2.9427 2.1388 32 1 3.7615 4.4816 1.2477 33 1 5.7797 3.7667 0.1468 34 1 5.6604 1.2499 -1.3841 35 1 5.7102 2.8849 -2.0860 36 1 7.9136 3.2762 -1.0180 37 1 7.8637 1.6412 -0.3162 38 1 11.2523 1.8968 -1.7347 39 1 4.2549 5.3399 -0.6921 40 1 3.3661 6.4431 -2.7348 41 1 2.0739 5.0746 -4.3596 42 1 1.7303 2.6782 -3.9094 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351819855.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:13 Heat of formation + Delta-G solvation = -66.080004 kcal Electronic energy + Delta-G solvation = -24166.449111 eV Core-core repulsion = 20725.001795 eV Total energy + Delta-G solvation = -3441.447316 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.08489 -40.83899 -38.57820 -37.25834 -35.50532 -33.62056 -33.25363 -31.49609 -30.57066 -29.42171 -27.95146 -26.01072 -24.75743 -24.25174 -22.56746 -22.41142 -20.60387 -18.90657 -18.41197 -18.14188 -17.53643 -17.14741 -16.98324 -16.58160 -16.24317 -16.02618 -15.67700 -15.23806 -15.11753 -14.47264 -14.39870 -14.26382 -13.94637 -13.80268 -13.42410 -13.18751 -13.08916 -12.92838 -12.86472 -12.67252 -12.50823 -12.38832 -12.18474 -11.74113 -11.65611 -11.39370 -11.33594 -11.11874 -10.74385 -10.55267 -10.41441 -9.89884 -9.45934 -8.19127 -6.29864 0.21652 0.41873 1.37811 1.39977 1.42606 1.50599 1.83718 2.40818 2.88356 3.14359 3.25146 3.29161 3.59765 3.84381 3.99072 4.05708 4.22635 4.25402 4.29021 4.34559 4.36367 4.51108 4.54726 4.60524 4.71251 4.71712 4.72924 4.81796 4.90394 4.96831 5.09329 5.22655 5.23966 5.28480 5.44737 5.57811 5.68731 5.77550 5.82324 6.05971 6.22904 6.44893 6.85959 6.91532 7.10311 7.38851 8.92531 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.015458 B = 0.004528 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.925539 B = 6181.815055 C = 6681.992056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.371 6.371 3 C 0.487 3.513 4 O -0.518 6.518 5 C -0.092 4.092 6 C 0.173 3.827 7 C -0.143 4.143 8 N -0.663 5.663 9 C 0.090 3.910 10 C 0.037 3.963 11 C -0.543 4.543 12 H 0.052 0.948 13 C 0.007 3.993 14 N -0.928 5.928 15 Si 0.960 3.040 16 H -0.270 1.270 17 H -0.280 1.280 18 H -0.268 1.268 19 C 0.112 3.888 20 C -0.184 4.184 21 C -0.078 4.078 22 C -0.179 4.179 23 C 0.082 3.918 24 N -0.499 5.499 25 H 0.127 0.873 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.096 0.904 29 H 0.121 0.879 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.348 0.652 34 H 0.058 0.942 35 H 0.007 0.993 36 H -0.007 1.007 37 H 0.001 0.999 38 H 0.264 0.736 39 H 0.140 0.860 40 H 0.159 0.841 41 H 0.161 0.839 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.154 2.921 1.695 20.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.288 6.288 3 C 0.330 3.670 4 O -0.407 6.407 5 C -0.130 4.130 6 C 0.081 3.919 7 C -0.200 4.200 8 N -0.294 5.294 9 C -0.038 4.038 10 C -0.001 4.001 11 C -0.582 4.582 12 H 0.071 0.929 13 C -0.192 4.192 14 N -0.568 5.568 15 Si 0.785 3.215 16 H -0.195 1.195 17 H -0.205 1.205 18 H -0.193 1.193 19 C -0.027 4.027 20 C -0.204 4.204 21 C -0.103 4.103 22 C -0.199 4.199 23 C -0.075 4.075 24 N -0.209 5.209 25 H 0.145 0.855 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.115 0.885 29 H 0.139 0.861 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.167 0.833 34 H 0.077 0.923 35 H 0.025 0.975 36 H 0.011 0.989 37 H 0.019 0.981 38 H 0.073 0.927 39 H 0.158 0.842 40 H 0.177 0.823 41 H 0.179 0.821 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -20.251 1.745 2.265 20.452 hybrid contribution 0.449 1.334 -1.630 2.154 sum -19.801 3.079 0.635 20.050 Atomic orbital electron populations 1.23428 0.75123 1.05218 1.02159 1.86488 1.24792 1.33300 1.84247 1.23292 0.91713 0.81086 0.70865 1.90530 1.67505 1.36495 1.46161 1.21174 0.87735 0.97936 1.06126 1.19702 0.87260 0.92927 0.91985 1.22078 1.02289 1.00617 0.95027 1.60772 1.04932 1.26921 1.36778 1.21735 0.95670 0.98007 0.88421 1.18871 0.90443 0.95244 0.95544 1.21504 0.92176 1.42161 1.02351 0.92948 1.25866 0.97579 0.95720 1.00016 1.70080 1.03773 1.48524 1.34404 0.85575 0.77204 0.79225 0.79499 1.19459 1.20547 1.19276 1.21972 0.93351 0.91852 0.95571 1.22064 1.02522 0.95632 1.00152 1.21904 0.94198 1.01632 0.92606 1.22391 1.00639 0.95195 1.01629 1.23092 0.96514 0.94024 0.93880 1.67357 1.09472 1.40735 1.03308 0.85496 0.91832 0.92673 0.88550 0.86138 0.90464 0.90420 0.91313 0.83276 0.92343 0.97510 0.98878 0.98065 0.92700 0.84179 0.82300 0.82103 0.81581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.56 113.37 1.20 1.82 16 2 O -0.37 -9.74 10.56 -51.35 -0.54 -10.28 16 3 C 0.49 14.21 6.54 71.23 0.47 14.67 16 4 O -0.52 -16.37 11.58 21.93 0.25 -16.12 16 5 C -0.09 -2.75 4.40 29.85 0.13 -2.61 16 6 C 0.17 5.22 0.54 2.79 0.00 5.23 16 7 C -0.14 -3.63 8.17 71.98 0.59 -3.04 16 8 N -0.66 -22.87 6.03 -473.87 -2.86 -25.73 16 9 C 0.09 3.85 4.96 86.30 0.43 4.28 16 10 C 0.04 1.94 5.27 29.85 0.16 2.09 16 11 C -0.54 -31.31 9.11 25.60 0.23 -31.07 16 12 H 0.05 2.95 7.74 -2.91 -0.02 2.92 16 13 C 0.01 0.38 5.46 84.65 0.46 0.84 16 14 N -0.93 -56.38 13.29 21.45 0.28 -56.10 16 15 Si 0.96 44.54 29.54 68.60 2.03 46.57 16 16 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 17 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 19 C 0.11 3.51 3.07 42.55 0.13 3.64 16 20 C -0.18 -5.11 8.90 22.36 0.20 -4.91 16 21 C -0.08 -1.84 10.18 22.47 0.23 -1.61 16 22 C -0.18 -4.10 10.11 22.36 0.23 -3.87 16 23 C 0.08 2.22 11.18 84.67 0.95 3.17 16 24 N -0.50 -16.09 7.15 -183.88 -1.31 -17.40 16 25 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 27 H 0.05 1.07 8.13 -2.39 -0.02 1.05 16 28 H 0.10 3.22 6.31 -2.38 -0.02 3.20 16 29 H 0.12 3.25 8.14 -2.39 -0.02 3.23 16 30 H 0.08 2.12 5.52 -2.39 -0.01 2.11 16 31 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.07 1.56 7.25 -2.39 -0.02 1.54 16 33 H 0.35 11.35 8.31 -89.70 -0.75 10.61 16 34 H 0.06 2.54 6.23 -2.39 -0.01 2.52 16 35 H 0.01 0.30 7.11 -2.38 -0.02 0.28 16 36 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 37 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 39 H 0.14 3.41 7.27 -2.91 -0.02 3.39 16 40 H 0.16 2.73 8.06 -2.91 -0.02 2.70 16 41 H 0.16 2.54 8.06 -2.91 -0.02 2.51 16 42 H 0.17 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -70.54 343.11 3.52 -67.02 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 0.28 Total: 23.43 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: 5.40 Total: -11.39 kcal Atomic # 7 Polarization: -95.34 SS G_CDS: -3.89 Total: -99.23 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.29 Total: -26.40 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -70.54 3.52 -67.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351819855.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.939 kcal (2) G-P(sol) polarization free energy of solvation -70.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds