Wall clock time and date at job start Tue Mar 31 2020 07:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46895 * 2 1 4 4 N 1.46497 * 109.46808 * 186.15111 * 3 2 1 5 5 C 1.36904 * 120.00547 * 279.15910 * 4 3 2 6 6 H 1.07996 * 120.00615 * 170.26200 * 5 4 3 7 7 C 1.39022 * 119.99602 * 350.25851 * 5 4 3 8 8 N 1.31388 * 120.00028 * 30.01227 * 7 5 4 9 9 Si 1.86804 * 119.99993 * 210.00467 * 7 5 4 10 10 H 1.48506 * 109.46738 * 95.00119 * 9 7 5 11 11 H 1.48503 * 109.47166 * 214.99919 * 9 7 5 12 12 H 1.48500 * 109.47159 * 335.00077 * 9 7 5 13 13 C 1.34778 * 119.99831 * 99.16067 * 4 3 2 14 14 O 1.21621 * 120.00264 * 185.02727 * 13 4 3 15 15 C 1.47509 * 119.99903 * 5.02389 * 13 4 3 16 16 C 1.40322 * 120.50038 * 133.16135 * 15 13 4 17 17 C 1.36958 * 118.46916 * 179.74723 * 16 15 13 18 18 C 1.39156 * 119.39957 * 0.51869 * 17 16 15 19 19 O 1.35504 * 119.51074 * 179.74385 * 18 17 16 20 20 C 1.42905 * 116.99604 * 179.73235 * 19 18 17 21 21 C 1.53000 * 109.46545 * 269.99917 * 20 19 18 22 22 C 1.52997 * 109.46910 * 150.00253 * 20 19 18 23 23 N 1.32432 * 120.97599 * 359.47394 * 18 17 16 24 24 C 1.31702 * 121.66543 * 0.26619 * 23 18 17 25 25 H 1.08999 * 109.47438 * 59.99876 * 1 2 3 26 26 H 1.09004 * 109.47348 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47427 * 299.99743 * 1 2 3 28 28 H 1.08993 * 109.47256 * 240.00329 * 2 1 3 29 29 H 1.09000 * 109.47083 * 119.99714 * 2 1 3 30 30 H 1.08997 * 109.46894 * 66.15618 * 3 2 1 31 31 H 1.08999 * 109.46996 * 306.15399 * 3 2 1 32 32 H 0.96998 * 119.99718 * 180.02562 * 8 7 5 33 33 H 1.08004 * 120.76458 * 0.04625 * 16 15 13 34 34 H 1.08003 * 120.30230 * 180.28216 * 17 16 15 35 35 H 1.09001 * 109.47460 * 29.99814 * 20 19 18 36 36 H 1.08999 * 109.47488 * 60.00475 * 21 20 19 37 37 H 1.09001 * 109.46557 * 180.02562 * 21 20 19 38 38 H 1.09001 * 109.47157 * 300.00083 * 21 20 19 39 39 H 1.09001 * 109.47108 * 179.97438 * 22 20 19 40 40 H 1.09006 * 109.46871 * 299.99516 * 22 20 19 41 41 H 1.09001 * 109.47417 * 59.99535 * 22 20 19 42 42 H 1.08000 * 119.75365 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.4974 1.4452 -0.1480 5 6 4.2964 1.2160 0.9398 6 1 5.3571 1.0615 0.8079 7 6 3.7424 1.1824 2.2144 8 7 2.5017 0.7834 2.3811 9 14 4.7619 1.7042 3.6901 10 1 4.4941 3.1324 3.9966 11 1 4.3981 0.8695 4.8633 12 1 6.2039 1.5256 3.3836 13 6 4.0517 1.6733 -1.3551 14 8 5.2564 1.5853 -1.4976 15 6 3.1973 2.0295 -2.5036 16 6 3.5403 3.1022 -3.3408 17 6 2.7199 3.3932 -4.3982 18 6 1.5742 2.6307 -4.6040 19 8 0.7583 2.9201 -5.6464 20 6 -0.3999 2.0992 -5.8109 21 6 -0.0580 0.9092 -6.7097 22 6 -1.5192 2.9198 -6.4549 23 7 1.2724 1.6232 -3.7993 24 6 2.0351 1.3049 -2.7739 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5137 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.7693 1.9235 0.9399 31 1 1.5894 1.9872 -0.8298 32 1 2.1150 0.7603 3.2704 33 1 4.4331 3.6818 -3.1583 34 1 2.9580 4.2096 -5.0640 35 1 -0.7294 1.7364 -4.8373 36 1 0.7395 0.3246 -6.2510 37 1 -0.9415 0.2834 -6.8356 38 1 0.2715 1.2721 -7.6833 39 1 -2.4024 2.2936 -6.5808 40 1 -1.7627 3.7676 -5.8146 41 1 -1.1897 3.2826 -7.4285 42 1 1.7597 0.4767 -2.1377 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352406802.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:37 Heat of formation + Delta-G solvation = -22.086642 kcal Electronic energy + Delta-G solvation = -24041.622511 eV Core-core repulsion = 20602.082891 eV Total energy + Delta-G solvation = -3439.539620 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -40.55541 -38.94400 -37.46089 -35.47495 -33.30896 -32.48559 -32.17225 -31.48920 -29.85890 -27.35842 -25.98112 -24.92053 -23.72481 -23.15627 -21.10350 -20.77247 -19.54627 -18.36211 -17.13419 -16.72828 -16.29802 -15.55968 -15.02190 -14.74790 -14.48990 -14.21209 -14.01086 -13.56810 -13.47555 -13.37393 -12.95618 -12.70723 -12.42243 -12.37519 -12.24905 -12.04234 -11.99063 -11.80700 -11.43343 -11.01489 -10.96753 -10.87790 -10.70417 -10.45139 -10.36106 -10.16483 -9.79839 -9.60214 -9.40665 -8.78577 -8.50931 -8.04519 -7.91650 -6.51235 -3.82396 1.32776 1.56988 3.09999 3.13768 3.22514 3.27662 3.71014 4.01967 4.23945 4.52542 4.73104 4.80867 4.91480 4.95299 5.16677 5.28335 5.31603 5.39533 5.43329 5.54739 5.62469 5.73713 5.81354 5.91040 5.95355 5.99802 6.01033 6.12347 6.17209 6.22273 6.38547 6.56753 6.59821 6.71338 6.78461 6.84808 7.25030 7.42721 7.45496 7.70522 8.00076 8.10489 8.41098 9.07483 9.31467 9.90007 10.45502 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023771 B = 0.004356 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.647618 B = 6426.544163 C = 7178.210024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.129 4.129 3 C 0.112 3.888 4 N -0.426 5.426 5 C -0.310 4.310 6 H 0.109 0.891 7 C 0.039 3.961 8 N -0.848 5.848 9 Si 0.915 3.085 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.473 3.527 14 O -0.591 6.591 15 C -0.176 4.176 16 C -0.009 4.009 17 C -0.196 4.196 18 C 0.314 3.686 19 O -0.305 6.305 20 C 0.080 3.920 21 C -0.168 4.168 22 C -0.149 4.149 23 N -0.540 5.540 24 C 0.146 3.854 25 H 0.039 0.961 26 H 0.043 0.957 27 H 0.054 0.946 28 H 0.033 0.967 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.040 0.960 32 H 0.270 0.730 33 H 0.143 0.857 34 H 0.138 0.862 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.194 2.433 -10.552 14.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.166 4.166 3 C -0.011 4.011 4 N -0.141 5.141 5 C -0.436 4.436 6 H 0.127 0.873 7 C -0.166 4.166 8 N -0.486 5.486 9 Si 0.741 3.259 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.192 1.192 13 C 0.262 3.738 14 O -0.478 6.478 15 C -0.182 4.182 16 C -0.035 4.035 17 C -0.217 4.217 18 C 0.135 3.865 19 O -0.213 6.213 20 C 0.024 3.976 21 C -0.225 4.225 22 C -0.206 4.206 23 N -0.264 5.264 24 C -0.010 4.010 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.129 0.871 30 H 0.122 0.878 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.161 0.839 34 H 0.156 0.844 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -9.496 2.072 -10.791 14.523 hybrid contribution 0.861 0.491 0.957 1.377 sum -8.635 2.563 -9.834 13.336 Atomic orbital electron populations 1.21649 0.97122 1.00319 1.00785 1.22057 0.93966 0.98038 1.02574 1.21959 0.80260 0.97142 1.01770 1.43775 1.05856 1.57727 1.06770 1.19739 0.93314 1.47384 0.83213 0.87302 1.25269 0.96357 0.95969 0.99005 1.70149 1.15048 1.39766 1.23644 0.86089 0.80704 0.78934 0.80146 1.20308 1.21061 1.19183 1.17422 0.87379 0.86570 0.82408 1.90619 1.14523 1.58956 1.83702 1.21113 0.98028 0.99156 0.99927 1.21156 0.97520 0.93950 0.90909 1.20647 0.95303 1.03866 1.01843 1.19919 0.89078 0.90577 0.86942 1.86219 1.35449 1.55601 1.43991 1.22296 0.84035 0.90684 1.00623 1.22205 1.02543 0.97831 0.99927 1.21896 0.96821 1.00544 1.01387 1.67305 1.34122 1.17620 1.07329 1.23387 0.88653 0.97654 0.91258 0.94173 0.93806 0.92708 0.94871 0.87080 0.87784 0.94210 0.91974 0.83933 0.84394 0.89127 0.91842 0.91319 0.92254 0.90694 0.91896 0.91859 0.80828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.91 37.16 0.37 -1.96 16 2 C -0.13 -2.57 4.83 -26.73 -0.13 -2.70 16 3 C 0.11 2.43 4.17 -4.04 -0.02 2.42 16 4 N -0.43 -10.59 2.64 -116.00 -0.31 -10.89 16 5 C -0.31 -8.24 9.33 -15.00 -0.14 -8.38 16 6 H 0.11 3.10 7.34 -52.49 -0.39 2.71 16 7 C 0.04 0.95 5.09 -17.45 -0.09 0.86 16 8 N -0.85 -20.18 8.06 55.50 0.45 -19.74 16 9 Si 0.92 19.62 29.65 -169.99 -5.04 14.58 16 10 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 11 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 12 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 13 C 0.47 11.72 7.22 -12.48 -0.09 11.63 16 14 O -0.59 -16.59 16.61 5.26 0.09 -16.50 16 15 C -0.18 -3.62 5.04 -104.82 -0.53 -4.15 16 16 C -0.01 -0.16 9.81 -39.26 -0.39 -0.55 16 17 C -0.20 -3.07 9.97 -39.71 -0.40 -3.47 16 18 C 0.31 5.13 7.46 -16.95 -0.13 5.01 16 19 O -0.30 -4.43 9.75 -18.21 -0.18 -4.61 16 20 C 0.08 0.96 3.10 -26.73 -0.08 0.88 16 21 C -0.17 -1.82 9.53 37.16 0.35 -1.46 16 22 C -0.15 -1.36 9.56 37.16 0.36 -1.00 16 23 N -0.54 -9.35 8.62 -12.93 -0.11 -9.46 16 24 C 0.15 2.75 8.61 -17.10 -0.15 2.60 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.03 0.66 6.18 -51.93 -0.32 0.34 16 29 H 0.11 2.53 6.02 -51.93 -0.31 2.22 16 30 H 0.10 2.43 5.88 -51.93 -0.31 2.12 16 31 H 0.04 0.81 5.09 -51.93 -0.26 0.54 16 32 H 0.27 6.09 8.31 -40.82 -0.34 5.75 16 33 H 0.14 2.38 8.06 -52.48 -0.42 1.96 16 34 H 0.14 1.77 8.06 -52.48 -0.42 1.34 16 35 H 0.09 1.19 6.97 -51.93 -0.36 0.83 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.18 3.26 3.93 -52.49 -0.21 3.05 16 LS Contribution 339.40 15.07 5.11 5.11 Total: -1.00 -28.50 339.40 -6.98 -35.48 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -5.94 Total: 6.31 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -1.05 Total: -0.28 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.03 Total: -40.09 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.09 Total: -21.11 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.04 Total: 14.58 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.50 -6.98 -35.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352406802.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.389 kcal (2) G-P(sol) polarization free energy of solvation -28.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds