Wall clock time and date at job start Tue Mar 31 2020 07:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46895 * 2 1 4 4 N 1.46497 * 109.46808 * 186.15111 * 3 2 1 5 5 C 1.36904 * 120.00547 * 279.15910 * 4 3 2 6 6 H 1.07996 * 120.00615 * 170.26200 * 5 4 3 7 7 C 1.39022 * 119.99602 * 350.25851 * 5 4 3 8 8 N 1.31388 * 120.00028 * 30.01227 * 7 5 4 9 9 Si 1.86804 * 119.99993 * 210.00467 * 7 5 4 10 10 H 1.48506 * 109.46738 * 95.00119 * 9 7 5 11 11 H 1.48503 * 109.47166 * 214.99919 * 9 7 5 12 12 H 1.48500 * 109.47159 * 335.00077 * 9 7 5 13 13 C 1.34778 * 119.99831 * 99.16067 * 4 3 2 14 14 O 1.21621 * 120.00264 * 185.02727 * 13 4 3 15 15 C 1.47509 * 119.99903 * 5.02389 * 13 4 3 16 16 C 1.40322 * 120.50038 * 133.16135 * 15 13 4 17 17 C 1.36958 * 118.46916 * 179.74723 * 16 15 13 18 18 C 1.39156 * 119.39957 * 0.51869 * 17 16 15 19 19 O 1.35504 * 119.51074 * 179.74385 * 18 17 16 20 20 C 1.42905 * 116.99604 * 179.73235 * 19 18 17 21 21 C 1.53000 * 109.46545 * 269.99917 * 20 19 18 22 22 C 1.52997 * 109.46910 * 150.00253 * 20 19 18 23 23 N 1.32432 * 120.97599 * 359.47394 * 18 17 16 24 24 C 1.31702 * 121.66543 * 0.26619 * 23 18 17 25 25 H 1.08999 * 109.47438 * 59.99876 * 1 2 3 26 26 H 1.09004 * 109.47348 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47427 * 299.99743 * 1 2 3 28 28 H 1.08993 * 109.47256 * 240.00329 * 2 1 3 29 29 H 1.09000 * 109.47083 * 119.99714 * 2 1 3 30 30 H 1.08997 * 109.46894 * 66.15618 * 3 2 1 31 31 H 1.08999 * 109.46996 * 306.15399 * 3 2 1 32 32 H 0.96998 * 119.99718 * 180.02562 * 8 7 5 33 33 H 1.08004 * 120.76458 * 0.04625 * 16 15 13 34 34 H 1.08003 * 120.30230 * 180.28216 * 17 16 15 35 35 H 1.09001 * 109.47460 * 29.99814 * 20 19 18 36 36 H 1.08999 * 109.47488 * 60.00475 * 21 20 19 37 37 H 1.09001 * 109.46557 * 180.02562 * 21 20 19 38 38 H 1.09001 * 109.47157 * 300.00083 * 21 20 19 39 39 H 1.09001 * 109.47108 * 179.97438 * 22 20 19 40 40 H 1.09006 * 109.46871 * 299.99516 * 22 20 19 41 41 H 1.09001 * 109.47417 * 59.99535 * 22 20 19 42 42 H 1.08000 * 119.75365 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.4974 1.4452 -0.1480 5 6 4.2964 1.2160 0.9398 6 1 5.3571 1.0615 0.8079 7 6 3.7424 1.1824 2.2144 8 7 2.5017 0.7834 2.3811 9 14 4.7619 1.7042 3.6901 10 1 4.4941 3.1324 3.9966 11 1 4.3981 0.8695 4.8633 12 1 6.2039 1.5256 3.3836 13 6 4.0517 1.6733 -1.3551 14 8 5.2564 1.5853 -1.4976 15 6 3.1973 2.0295 -2.5036 16 6 3.5403 3.1022 -3.3408 17 6 2.7199 3.3932 -4.3982 18 6 1.5742 2.6307 -4.6040 19 8 0.7583 2.9201 -5.6464 20 6 -0.3999 2.0992 -5.8109 21 6 -0.0580 0.9092 -6.7097 22 6 -1.5192 2.9198 -6.4549 23 7 1.2724 1.6232 -3.7993 24 6 2.0351 1.3049 -2.7739 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5137 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.7693 1.9235 0.9399 31 1 1.5894 1.9872 -0.8298 32 1 2.1150 0.7603 3.2704 33 1 4.4331 3.6818 -3.1583 34 1 2.9580 4.2096 -5.0640 35 1 -0.7294 1.7364 -4.8373 36 1 0.7395 0.3246 -6.2510 37 1 -0.9415 0.2834 -6.8356 38 1 0.2715 1.2721 -7.6833 39 1 -2.4024 2.2936 -6.5808 40 1 -1.7627 3.7676 -5.8146 41 1 -1.1897 3.2826 -7.4285 42 1 1.7597 0.4767 -2.1377 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352406802.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:36 Heat of formation + Delta-G solvation = -39.090040 kcal Electronic energy + Delta-G solvation = -24042.359834 eV Core-core repulsion = 20602.082891 eV Total energy + Delta-G solvation = -3440.276943 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.95277 -40.51677 -38.87330 -37.35684 -34.52105 -34.01726 -33.59540 -33.26932 -31.31005 -28.14468 -27.71631 -26.61163 -25.05321 -24.68748 -22.43950 -22.14515 -21.24300 -19.56717 -18.96789 -18.43086 -17.75731 -16.81979 -16.70574 -16.23664 -15.99570 -15.75021 -15.39959 -15.07512 -14.98525 -14.68445 -14.28830 -14.01974 -13.91525 -13.67507 -13.50858 -13.25553 -13.21852 -13.10714 -12.84409 -12.68813 -12.51584 -12.13891 -12.05609 -11.98972 -11.86806 -11.72090 -11.43991 -11.01261 -10.88092 -10.65374 -10.32032 -9.83863 -9.44931 -8.41198 -5.82341 -0.11237 0.18444 1.35878 1.44489 1.54572 1.96417 2.00169 2.24868 2.70485 2.90124 3.07019 3.22469 3.79855 3.87463 3.95242 4.06519 4.08872 4.14723 4.30726 4.32617 4.48150 4.57131 4.65728 4.72078 4.75423 4.86058 4.87349 4.89850 4.97118 5.04472 5.17259 5.22355 5.24010 5.30202 5.33533 5.39395 5.45881 5.60388 5.95678 6.03567 6.22503 6.49597 6.71196 7.13073 7.40768 7.99564 8.53583 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023771 B = 0.004356 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.647618 B = 6426.544163 C = 7178.210024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.120 4.120 3 C 0.119 3.881 4 N -0.432 5.432 5 C -0.358 4.358 6 H 0.076 0.924 7 C 0.019 3.981 8 N -0.844 5.844 9 Si 0.975 3.025 10 H -0.271 1.271 11 H -0.269 1.269 12 H -0.280 1.280 13 C 0.462 3.538 14 O -0.640 6.640 15 C -0.203 4.203 16 C -0.010 4.010 17 C -0.183 4.183 18 C 0.319 3.681 19 O -0.303 6.303 20 C 0.069 3.931 21 C -0.164 4.164 22 C -0.143 4.143 23 N -0.539 5.539 24 C 0.151 3.849 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.031 0.969 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.055 0.945 32 H 0.278 0.722 33 H 0.148 0.852 34 H 0.174 0.826 35 H 0.079 0.921 36 H 0.040 0.960 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.097 0.903 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.616 3.181 -11.635 16.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.158 4.158 3 C -0.003 4.003 4 N -0.147 5.147 5 C -0.484 4.484 6 H 0.094 0.906 7 C -0.186 4.186 8 N -0.480 5.480 9 Si 0.799 3.201 10 H -0.197 1.197 11 H -0.194 1.194 12 H -0.205 1.205 13 C 0.253 3.747 14 O -0.531 6.531 15 C -0.209 4.209 16 C -0.036 4.036 17 C -0.203 4.203 18 C 0.139 3.861 19 O -0.210 6.210 20 C 0.014 3.986 21 C -0.221 4.221 22 C -0.200 4.200 23 N -0.263 5.263 24 C -0.005 4.005 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.049 0.951 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.166 0.834 34 H 0.191 0.809 35 H 0.097 0.903 36 H 0.059 0.941 37 H 0.109 0.891 38 H 0.086 0.914 39 H 0.116 0.884 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -11.987 2.811 -11.874 17.105 hybrid contribution 1.506 0.252 1.194 1.938 sum -10.481 3.064 -10.680 15.275 Atomic orbital electron populations 1.21551 0.94073 1.01756 1.01380 1.21901 0.96488 0.96398 1.01059 1.21953 0.78707 0.98316 1.01361 1.43956 1.06950 1.57244 1.06565 1.19535 0.92439 1.51495 0.84979 0.90650 1.25848 0.97651 0.94836 1.00313 1.70205 1.15369 1.37771 1.24662 0.85215 0.78609 0.78786 0.77460 1.19666 1.19438 1.20471 1.18063 0.87364 0.85949 0.83370 1.90556 1.16729 1.61043 1.84725 1.20844 0.98831 1.01538 0.99713 1.21281 0.98086 0.93259 0.90972 1.20926 0.94178 1.04142 1.01077 1.20204 0.89314 0.89778 0.86755 1.86247 1.35964 1.56012 1.42813 1.22638 0.83818 0.91491 1.00700 1.22189 1.02838 0.97371 0.99735 1.21902 0.96329 1.00470 1.01313 1.67353 1.33710 1.18179 1.07041 1.23211 0.88200 0.97348 0.91733 0.92787 0.91977 0.92804 0.95068 0.89889 0.89430 0.92716 0.91108 0.83391 0.80899 0.90296 0.94112 0.89059 0.91396 0.88416 0.92051 0.91085 0.81158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.09 9.91 71.98 0.71 -3.38 16 2 C -0.12 -4.85 4.83 30.59 0.15 -4.70 16 3 C 0.12 5.27 4.17 86.38 0.36 5.63 16 4 N -0.43 -22.49 2.64 -639.16 -1.69 -24.18 16 5 C -0.36 -20.02 9.33 84.09 0.78 -19.24 16 6 H 0.08 4.63 7.34 -2.91 -0.02 4.61 16 7 C 0.02 0.97 5.09 84.95 0.43 1.40 16 8 N -0.84 -40.29 8.06 21.68 0.17 -40.11 16 9 Si 0.98 40.72 29.65 68.60 2.03 42.75 16 10 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 11 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 12 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 13 C 0.46 24.02 7.22 86.69 0.63 24.65 16 14 O -0.64 -38.16 16.61 -4.10 -0.07 -38.23 16 15 C -0.20 -8.50 5.04 -20.00 -0.10 -8.60 16 16 C -0.01 -0.35 9.81 22.48 0.22 -0.13 16 17 C -0.18 -5.33 9.97 22.19 0.22 -5.11 16 18 C 0.32 9.76 7.46 84.82 0.63 10.40 16 19 O -0.30 -7.98 9.75 -88.06 -0.86 -8.84 16 20 C 0.07 1.48 3.10 30.59 0.09 1.57 16 21 C -0.16 -3.13 9.53 71.98 0.69 -2.45 16 22 C -0.14 -2.11 9.56 71.98 0.69 -1.42 16 23 N -0.54 -17.94 8.62 -307.70 -2.65 -20.59 16 24 C 0.15 5.65 8.61 85.04 0.73 6.38 16 25 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.03 1.25 6.18 -2.39 -0.01 1.24 16 29 H 0.08 3.84 6.02 -2.39 -0.01 3.82 16 30 H 0.09 4.14 5.88 -2.39 -0.01 4.13 16 31 H 0.05 2.23 5.09 -2.39 -0.01 2.22 16 32 H 0.28 12.31 8.31 -92.71 -0.77 11.54 16 33 H 0.15 4.96 8.06 -2.91 -0.02 4.93 16 34 H 0.17 3.80 8.06 -2.91 -0.02 3.77 16 35 H 0.08 1.89 6.97 -2.39 -0.02 1.88 16 36 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 41 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.17 6.42 3.93 -2.91 -0.01 6.41 16 Total: -1.00 -64.35 339.40 4.20 -60.14 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: 1.02 Total: 24.06 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 6.24 Total: 5.00 kcal Atomic # 7 Polarization: -80.72 SS G_CDS: -4.17 Total: -84.89 kcal Atomic # 8 Polarization: -46.14 SS G_CDS: -0.93 Total: -47.06 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Total: -64.35 4.20 -60.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352406802.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.053 kcal (2) G-P(sol) polarization free energy of solvation -64.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds