Wall clock time and date at job start Tue Mar 31 2020 07:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.36014 * 117.00332 * 2 1 4 4 C 1.38502 * 120.07606 * 359.97438 * 3 2 1 5 5 C 1.38285 * 120.01989 * 179.97438 * 4 3 2 6 6 C 1.38257 * 120.17649 * 0.03120 * 5 4 3 7 7 C 1.38222 * 120.16251 * 359.97438 * 6 5 4 8 8 C 1.38732 * 119.97801 * 359.97438 * 7 6 5 9 9 N 1.39962 * 120.08595 * 179.97438 * 8 7 6 10 10 C 1.46894 * 111.00509 * 325.81452 * 9 8 7 11 11 C 1.50703 * 109.47732 * 195.23711 * 10 9 8 12 12 O 1.21294 * 119.99518 * 5.60226 * 11 10 9 13 13 N 1.34767 * 120.00257 * 185.60032 * 11 10 9 14 14 C 1.37099 * 120.00156 * 180.02562 * 13 11 10 15 15 H 1.08004 * 119.99261 * 359.97438 * 14 13 11 16 16 C 1.38948 * 120.00128 * 180.02562 * 14 13 11 17 17 N 1.31412 * 119.99856 * 179.97438 * 16 14 13 18 18 Si 1.86790 * 120.00288 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47512 * 89.99959 * 18 16 14 20 20 H 1.48499 * 109.47461 * 209.99980 * 18 16 14 21 21 H 1.48502 * 109.46935 * 330.00006 * 18 16 14 22 22 C 1.46904 * 110.99977 * 89.77066 * 9 8 7 23 23 C 1.53001 * 109.47117 * 302.78037 * 22 9 8 24 24 C 1.53001 * 109.47284 * 62.78364 * 22 9 8 25 25 H 1.09001 * 109.47263 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47158 * 300.00416 * 1 2 3 27 27 H 1.09001 * 109.47410 * 60.00281 * 1 2 3 28 28 H 1.08001 * 119.99201 * 0.26216 * 4 3 2 29 29 H 1.07998 * 119.91139 * 180.02562 * 5 4 3 30 30 H 1.08001 * 119.91850 * 179.97438 * 6 5 4 31 31 H 1.07996 * 120.01039 * 180.02562 * 7 6 5 32 32 H 1.09003 * 109.47384 * 315.23829 * 10 9 8 33 33 H 1.09002 * 109.47257 * 75.23563 * 10 9 8 34 34 H 0.97003 * 120.00317 * 0.02562 * 13 11 10 35 35 H 0.97001 * 120.00104 * 179.97438 * 17 16 14 36 36 H 1.09003 * 109.47091 * 182.78419 * 22 9 8 37 37 H 1.08999 * 109.46902 * 66.97221 * 23 22 9 38 38 H 1.09004 * 109.46927 * 186.97010 * 23 22 9 39 39 H 1.08999 * 109.46853 * 306.97228 * 23 22 9 40 40 H 1.08994 * 109.47331 * 54.14024 * 24 22 9 41 41 H 1.08995 * 109.47442 * 174.14492 * 24 22 9 42 42 H 1.09002 * 109.46943 * 294.14280 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2938 2.3745 -0.0005 5 6 1.9228 3.6060 0.0000 6 6 3.3034 3.6811 0.0004 7 6 4.0618 2.5256 0.0008 8 6 3.4376 1.2867 0.0014 9 7 4.2034 0.1151 0.0013 10 6 5.4406 0.2949 -0.7699 11 6 6.0482 -1.0520 -1.0662 12 8 5.4541 -2.0651 -0.7633 13 7 7.2516 -1.1308 -1.6678 14 6 7.8041 -2.3561 -1.9379 15 1 7.2750 -3.2582 -1.6681 16 6 9.0450 -2.4373 -2.5577 17 7 9.5747 -3.6118 -2.8161 18 14 9.9603 -0.8771 -3.0235 19 1 10.8288 -0.4568 -1.8947 20 1 10.7973 -1.1336 -4.2231 21 1 8.9824 0.1996 -3.3233 22 6 4.4966 -0.3222 1.3727 23 6 5.2157 0.8005 2.1233 24 6 3.1886 -0.6599 2.0911 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 0.2152 2.3193 0.0033 29 1 1.3342 4.5114 0.0000 30 1 3.7903 4.6451 0.0004 31 1 5.1400 2.5872 0.0016 32 1 5.2144 0.8054 -1.7060 33 1 6.1456 0.8922 -0.1916 34 1 7.7269 -0.3205 -1.9098 35 1 10.4409 -3.6686 -3.2491 36 1 5.1339 -1.2061 1.3437 37 1 4.5344 1.6402 2.2605 38 1 5.5429 0.4352 3.0968 39 1 6.0820 1.1258 1.5473 40 1 2.6271 -1.3847 1.5018 41 1 3.4108 -1.0823 3.0710 42 1 2.5961 0.2470 2.2122 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352681066.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:39:23 Heat of formation + Delta-G solvation = -22.688039 kcal Electronic energy + Delta-G solvation = -24279.811625 eV Core-core repulsion = 20840.245926 eV Total energy + Delta-G solvation = -3439.565699 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -40.73525 -38.78561 -37.57294 -36.48474 -33.86284 -32.08421 -31.56963 -30.21459 -29.84548 -27.25512 -27.15074 -26.31247 -24.02102 -22.34816 -21.98259 -20.15052 -19.18028 -18.14316 -17.93001 -16.41034 -16.19222 -16.02696 -15.48266 -15.17731 -14.91162 -14.76075 -14.40066 -13.88563 -13.73208 -13.47373 -13.21499 -12.94975 -12.54138 -12.46222 -12.21088 -11.99106 -11.95996 -11.77461 -11.69362 -11.28527 -11.15822 -11.06496 -10.99659 -10.85820 -10.56661 -10.36135 -9.93320 -9.48670 -9.05605 -8.59460 -8.27739 -8.12019 -7.60937 -6.26469 -3.77432 1.25727 1.45229 3.05976 3.09430 3.17749 3.36697 3.70306 3.79909 3.85946 4.14234 4.75717 4.80304 4.92551 5.02244 5.08994 5.11598 5.18896 5.26317 5.30802 5.37697 5.43062 5.45904 5.59722 5.63757 5.64501 5.79923 5.85573 5.98318 6.00715 6.06653 6.18675 6.20524 6.30110 6.47022 6.57153 6.64350 6.73660 7.21109 7.30139 7.62258 7.77424 8.19667 8.65920 9.00690 9.47739 9.89923 10.86878 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021292 B = 0.004387 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.719440 B = 6380.446405 C = 6818.796275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.288 6.288 3 C 0.142 3.858 4 C -0.205 4.205 5 C -0.097 4.097 6 C -0.147 4.147 7 C -0.122 4.122 8 C 0.079 3.921 9 N -0.458 5.458 10 C 0.039 3.961 11 C 0.455 3.545 12 O -0.553 6.553 13 N -0.594 5.594 14 C -0.302 4.302 15 H 0.120 0.880 16 C 0.041 3.959 17 N -0.883 5.883 18 Si 0.878 3.122 19 H -0.271 1.271 20 H -0.277 1.277 21 H -0.269 1.269 22 C 0.083 3.917 23 C -0.188 4.188 24 C -0.133 4.133 25 H 0.098 0.902 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.127 0.873 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.127 0.873 32 H 0.091 0.909 33 H 0.056 0.944 34 H 0.369 0.631 35 H 0.272 0.728 36 H 0.103 0.897 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.074 0.926 41 H 0.052 0.948 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.495 16.214 7.625 23.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.200 6.200 3 C 0.095 3.905 4 C -0.225 4.225 5 C -0.115 4.115 6 C -0.166 4.166 7 C -0.143 4.143 8 C -0.017 4.017 9 N -0.176 5.176 10 C -0.092 4.092 11 C 0.241 3.759 12 O -0.433 6.433 13 N -0.234 5.234 14 C -0.430 4.430 15 H 0.137 0.863 16 C -0.162 4.162 17 N -0.524 5.524 18 Si 0.705 3.295 19 H -0.197 1.197 20 H -0.202 1.202 21 H -0.195 1.195 22 C -0.022 4.022 23 C -0.247 4.247 24 C -0.191 4.191 25 H 0.116 0.884 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.145 0.855 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.145 0.855 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.202 0.798 35 H 0.083 0.917 36 H 0.121 0.879 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.903 14.745 7.526 22.275 hybrid contribution 1.151 2.031 -0.249 2.348 sum -13.752 16.776 7.277 22.881 Atomic orbital electron populations 1.23043 0.79663 1.03811 1.00643 1.86381 1.19903 1.25759 1.87946 1.18781 0.90792 0.84524 0.96395 1.21125 0.99790 0.92186 1.09372 1.20842 0.94565 0.96742 0.99394 1.20882 0.93816 0.97942 1.03965 1.21526 1.00281 0.91884 1.00607 1.18207 0.90181 0.89549 1.03753 1.59211 1.17637 1.27214 1.13575 1.22061 0.91138 0.97391 0.98565 1.19577 0.82510 0.90053 0.83799 1.90569 1.61318 1.36465 1.54985 1.42203 1.17773 1.08215 1.55202 1.19422 1.01867 0.85237 1.36511 0.86274 1.25013 0.96716 0.96918 0.97508 1.69622 1.18057 1.22736 1.41960 0.86695 0.80530 0.83085 0.79238 1.19695 1.20223 1.19496 1.21797 0.97569 0.98022 0.84832 1.22585 1.00867 1.00048 1.01181 1.21778 0.96597 1.01540 0.99179 0.88363 0.93203 0.93063 0.85547 0.86200 0.86219 0.85471 0.89068 0.92579 0.79827 0.91697 0.87856 0.92459 0.91983 0.92541 0.90751 0.92939 0.93726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 101.05 0.99 1.22 16 2 O -0.29 -4.12 8.02 -19.79 -0.16 -4.28 16 3 C 0.14 1.98 5.35 -39.09 -0.21 1.77 16 4 C -0.21 -2.30 9.04 -39.47 -0.36 -2.66 16 5 C -0.10 -0.99 10.04 -39.56 -0.40 -1.39 16 6 C -0.15 -1.58 10.04 -39.58 -0.40 -1.98 16 7 C -0.12 -1.55 7.11 -39.40 -0.28 -1.83 16 8 C 0.08 1.18 3.76 -83.56 -0.31 0.87 16 9 N -0.46 -7.96 3.88 -164.76 -0.64 -8.60 16 10 C 0.04 0.70 4.28 -4.98 -0.02 0.68 16 11 C 0.46 10.61 7.34 -10.99 -0.08 10.52 16 12 O -0.55 -15.10 14.67 5.55 0.08 -15.02 16 13 N -0.59 -14.37 5.09 -10.96 -0.06 -14.43 16 14 C -0.30 -8.62 10.16 -14.93 -0.15 -8.77 16 15 H 0.12 3.89 7.39 -52.48 -0.39 3.50 16 16 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 17 N -0.88 -26.07 13.96 55.50 0.77 -25.29 16 18 Si 0.88 19.59 27.74 -169.99 -4.71 14.88 16 19 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.27 -5.50 6.52 56.52 0.37 -5.13 16 22 C 0.08 1.37 2.65 -67.71 -0.18 1.19 16 23 C -0.19 -2.55 7.94 37.16 0.30 -2.25 16 24 C -0.13 -1.97 7.83 37.16 0.29 -1.68 16 25 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.38 7.66 -51.93 -0.40 -0.01 16 27 H 0.05 0.42 7.67 -51.93 -0.40 0.03 16 28 H 0.13 1.11 6.30 -52.49 -0.33 0.78 16 29 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 30 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 31 H 0.13 1.49 6.22 -52.49 -0.33 1.16 16 32 H 0.09 1.51 7.86 -51.93 -0.41 1.10 16 33 H 0.06 0.86 5.05 -51.93 -0.26 0.60 16 34 H 0.37 7.86 5.76 -40.82 -0.24 7.63 16 35 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.10 2.03 6.48 -51.93 -0.34 1.70 16 37 H 0.06 0.73 6.61 -51.93 -0.34 0.39 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.76 5.90 -51.93 -0.31 0.45 16 40 H 0.07 1.22 7.21 -51.93 -0.37 0.84 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.04 0.62 6.47 -51.93 -0.34 0.28 16 LS Contribution 330.37 15.07 4.98 4.98 Total: -1.00 -33.50 330.37 -6.36 -39.86 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -5.72 Total: 11.16 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -0.91 Total: -3.26 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 0.08 Total: -48.32 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.08 Total: -19.30 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.71 Total: 14.88 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.50 -6.36 -39.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352681066.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.174 kcal (2) G-P(sol) polarization free energy of solvation -33.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds