Wall clock time and date at job start Tue Mar 31 2020 07:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.36014 * 117.00332 * 2 1 4 4 C 1.38502 * 120.07606 * 359.97438 * 3 2 1 5 5 C 1.38285 * 120.01989 * 179.97438 * 4 3 2 6 6 C 1.38257 * 120.17649 * 0.03120 * 5 4 3 7 7 C 1.38222 * 120.16251 * 359.97438 * 6 5 4 8 8 C 1.38732 * 119.97801 * 359.97438 * 7 6 5 9 9 N 1.39962 * 120.08595 * 179.97438 * 8 7 6 10 10 C 1.46894 * 111.00509 * 325.81452 * 9 8 7 11 11 C 1.50703 * 109.47732 * 195.23711 * 10 9 8 12 12 O 1.21294 * 119.99518 * 5.60226 * 11 10 9 13 13 N 1.34767 * 120.00257 * 185.60032 * 11 10 9 14 14 C 1.37099 * 120.00156 * 180.02562 * 13 11 10 15 15 H 1.08004 * 119.99261 * 359.97438 * 14 13 11 16 16 C 1.38948 * 120.00128 * 180.02562 * 14 13 11 17 17 N 1.31412 * 119.99856 * 179.97438 * 16 14 13 18 18 Si 1.86790 * 120.00288 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47512 * 89.99959 * 18 16 14 20 20 H 1.48499 * 109.47461 * 209.99980 * 18 16 14 21 21 H 1.48502 * 109.46935 * 330.00006 * 18 16 14 22 22 C 1.46904 * 110.99977 * 89.77066 * 9 8 7 23 23 C 1.53001 * 109.47117 * 302.78037 * 22 9 8 24 24 C 1.53001 * 109.47284 * 62.78364 * 22 9 8 25 25 H 1.09001 * 109.47263 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47158 * 300.00416 * 1 2 3 27 27 H 1.09001 * 109.47410 * 60.00281 * 1 2 3 28 28 H 1.08001 * 119.99201 * 0.26216 * 4 3 2 29 29 H 1.07998 * 119.91139 * 180.02562 * 5 4 3 30 30 H 1.08001 * 119.91850 * 179.97438 * 6 5 4 31 31 H 1.07996 * 120.01039 * 180.02562 * 7 6 5 32 32 H 1.09003 * 109.47384 * 315.23829 * 10 9 8 33 33 H 1.09002 * 109.47257 * 75.23563 * 10 9 8 34 34 H 0.97003 * 120.00317 * 0.02562 * 13 11 10 35 35 H 0.97001 * 120.00104 * 179.97438 * 17 16 14 36 36 H 1.09003 * 109.47091 * 182.78419 * 22 9 8 37 37 H 1.08999 * 109.46902 * 66.97221 * 23 22 9 38 38 H 1.09004 * 109.46927 * 186.97010 * 23 22 9 39 39 H 1.08999 * 109.46853 * 306.97228 * 23 22 9 40 40 H 1.08994 * 109.47331 * 54.14024 * 24 22 9 41 41 H 1.08995 * 109.47442 * 174.14492 * 24 22 9 42 42 H 1.09002 * 109.46943 * 294.14280 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2938 2.3745 -0.0005 5 6 1.9228 3.6060 0.0000 6 6 3.3034 3.6811 0.0004 7 6 4.0618 2.5256 0.0008 8 6 3.4376 1.2867 0.0014 9 7 4.2034 0.1151 0.0013 10 6 5.4406 0.2949 -0.7699 11 6 6.0482 -1.0520 -1.0662 12 8 5.4541 -2.0651 -0.7633 13 7 7.2516 -1.1308 -1.6678 14 6 7.8041 -2.3561 -1.9379 15 1 7.2750 -3.2582 -1.6681 16 6 9.0450 -2.4373 -2.5577 17 7 9.5747 -3.6118 -2.8161 18 14 9.9603 -0.8771 -3.0235 19 1 10.8288 -0.4568 -1.8947 20 1 10.7973 -1.1336 -4.2231 21 1 8.9824 0.1996 -3.3233 22 6 4.4966 -0.3222 1.3727 23 6 5.2157 0.8005 2.1233 24 6 3.1886 -0.6599 2.0911 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 0.2152 2.3193 0.0033 29 1 1.3342 4.5114 0.0000 30 1 3.7903 4.6451 0.0004 31 1 5.1400 2.5872 0.0016 32 1 5.2144 0.8054 -1.7060 33 1 6.1456 0.8922 -0.1916 34 1 7.7269 -0.3205 -1.9098 35 1 10.4409 -3.6686 -3.2491 36 1 5.1339 -1.2061 1.3437 37 1 4.5344 1.6402 2.2605 38 1 5.5429 0.4352 3.0968 39 1 6.0820 1.1258 1.5473 40 1 2.6271 -1.3847 1.5018 41 1 3.4108 -1.0823 3.0710 42 1 2.5961 0.2470 2.2122 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352681066.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:39:22 Heat of formation + Delta-G solvation = -46.877911 kcal Electronic energy + Delta-G solvation = -24280.860576 eV Core-core repulsion = 20840.245926 eV Total energy + Delta-G solvation = -3440.614650 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.79036 -40.28171 -38.89606 -37.53195 -35.92879 -33.78168 -33.17007 -31.09640 -30.95625 -28.36737 -28.18382 -27.63160 -25.80994 -23.35874 -22.92092 -21.52293 -20.99471 -20.00429 -18.84864 -17.79137 -17.37282 -17.09688 -16.84306 -16.63210 -16.23021 -16.00463 -15.44125 -15.32950 -14.95064 -14.80938 -14.66313 -14.35395 -14.21610 -13.81686 -13.36388 -13.16266 -13.09586 -12.94074 -12.84426 -12.56114 -12.41852 -12.37270 -12.19371 -11.98184 -11.91991 -11.80929 -11.61034 -11.39339 -10.43537 -10.23124 -9.99208 -9.35440 -8.67564 -8.40292 -6.00917 0.38295 0.58685 1.30210 1.35333 1.44356 1.95964 2.23497 2.50825 2.58691 2.83990 3.15181 3.18948 3.90967 4.01885 4.08152 4.11017 4.15933 4.23219 4.33738 4.37776 4.44872 4.45074 4.46374 4.60441 4.67133 4.72835 4.77699 4.81432 4.89617 4.92640 5.06703 5.24038 5.40625 5.45873 5.47836 5.54880 5.64146 5.91908 5.92692 6.05081 6.28995 6.60850 6.79966 6.89472 7.40454 7.98337 8.77569 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021292 B = 0.004387 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.719440 B = 6380.446405 C = 6818.796275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.323 6.323 3 C 0.122 3.878 4 C -0.205 4.205 5 C -0.090 4.090 6 C -0.145 4.145 7 C -0.125 4.125 8 C 0.049 3.951 9 N -0.481 5.481 10 C 0.054 3.946 11 C 0.454 3.546 12 O -0.602 6.602 13 N -0.592 5.592 14 C -0.326 4.326 15 H 0.054 0.946 16 C -0.014 4.014 17 N -0.935 5.935 18 Si 0.963 3.037 19 H -0.255 1.255 20 H -0.274 1.274 21 H -0.233 1.233 22 C 0.080 3.920 23 C -0.176 4.176 24 C -0.121 4.121 25 H 0.102 0.898 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.148 0.852 29 H 0.152 0.848 30 H 0.148 0.852 31 H 0.135 0.865 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.388 0.612 35 H 0.279 0.721 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.048 0.952 41 H 0.064 0.936 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.876 21.321 7.769 27.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.236 6.236 3 C 0.076 3.924 4 C -0.224 4.224 5 C -0.108 4.108 6 C -0.164 4.164 7 C -0.146 4.146 8 C -0.047 4.047 9 N -0.200 5.200 10 C -0.077 4.077 11 C 0.241 3.759 12 O -0.485 6.485 13 N -0.234 5.234 14 C -0.455 4.455 15 H 0.072 0.928 16 C -0.212 4.212 17 N -0.576 5.576 18 Si 0.783 3.217 19 H -0.179 1.179 20 H -0.199 1.199 21 H -0.156 1.156 22 C -0.026 4.026 23 C -0.234 4.234 24 C -0.178 4.178 25 H 0.121 0.879 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.166 0.834 29 H 0.170 0.830 30 H 0.165 0.835 31 H 0.153 0.847 32 H 0.127 0.873 33 H 0.105 0.895 34 H 0.224 0.776 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.314 19.881 7.680 26.244 hybrid contribution 1.105 0.357 -0.254 1.189 sum -14.209 20.239 7.426 25.820 Atomic orbital electron populations 1.23256 0.77705 1.04692 1.02041 1.86331 1.22181 1.26801 1.88268 1.19061 0.90884 0.85224 0.97278 1.21419 1.00877 0.91662 1.08418 1.21280 0.94811 0.97449 0.97251 1.21228 0.94131 0.98386 1.02628 1.21646 1.00880 0.91574 1.00460 1.18332 0.90427 0.89221 1.06677 1.59049 1.17484 1.29641 1.13826 1.21927 0.92132 0.93405 1.00203 1.20748 0.81647 0.91918 0.81548 1.90547 1.62524 1.39150 1.56321 1.42008 1.18351 1.07309 1.55768 1.18984 1.02756 0.85229 1.38537 0.92773 1.26084 0.97044 1.01780 0.96338 1.69806 1.18875 1.26224 1.42704 0.85389 0.79232 0.77940 0.79139 1.17944 1.19942 1.15622 1.21709 0.97707 0.97455 0.85700 1.22455 1.00739 0.99184 1.01059 1.21642 0.95778 1.01355 0.99032 0.87949 0.91350 0.91920 0.83400 0.82998 0.83469 0.84687 0.87262 0.89465 0.77608 0.91162 0.92462 0.91126 0.91159 0.92282 0.93271 0.91737 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.32 -9.22 8.02 -93.71 -0.75 -9.97 16 3 C 0.12 3.23 5.35 22.59 0.12 3.35 16 4 C -0.20 -3.92 9.04 22.34 0.20 -3.72 16 5 C -0.09 -1.42 10.04 22.29 0.22 -1.20 16 6 C -0.15 -2.46 10.04 22.27 0.22 -2.23 16 7 C -0.13 -2.75 7.11 22.38 0.16 -2.59 16 8 C 0.05 1.38 3.76 38.22 0.14 1.52 16 9 N -0.48 -16.72 3.88 -675.18 -2.62 -19.34 16 10 C 0.05 1.87 4.28 85.56 0.37 2.23 16 11 C 0.45 21.80 7.34 87.66 0.64 22.45 16 12 O -0.60 -35.23 14.67 -3.07 -0.05 -35.28 16 13 N -0.59 -29.05 5.09 -306.99 -1.56 -30.61 16 14 C -0.33 -19.60 10.16 84.04 0.85 -18.74 16 15 H 0.05 3.88 7.39 -2.91 -0.02 3.86 16 16 C -0.01 -0.79 5.50 84.93 0.47 -0.33 16 17 N -0.94 -57.34 13.96 21.66 0.30 -57.04 16 18 Si 0.96 39.50 27.74 68.60 1.90 41.40 16 19 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 20 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 21 H -0.23 -8.12 6.52 99.48 0.65 -7.47 16 22 C 0.08 2.69 2.65 44.92 0.12 2.81 16 23 C -0.18 -4.50 7.94 71.98 0.57 -3.93 16 24 C -0.12 -3.63 7.83 71.98 0.56 -3.07 16 25 H 0.10 1.66 8.14 -2.39 -0.02 1.65 16 26 H 0.07 0.93 7.66 -2.39 -0.02 0.92 16 27 H 0.06 0.95 7.67 -2.39 -0.02 0.93 16 28 H 0.15 2.08 6.30 -2.91 -0.02 2.06 16 29 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 30 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 31 H 0.14 2.65 6.22 -2.91 -0.02 2.63 16 32 H 0.11 3.40 7.86 -2.39 -0.02 3.38 16 33 H 0.09 2.47 5.05 -2.39 -0.01 2.46 16 34 H 0.39 15.81 5.76 -92.71 -0.53 15.27 16 35 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 36 H 0.06 2.41 6.48 -2.39 -0.02 2.40 16 37 H 0.07 1.62 6.61 -2.39 -0.02 1.61 16 38 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.06 1.45 5.90 -2.39 -0.01 1.44 16 40 H 0.05 1.70 7.21 -2.39 -0.02 1.69 16 41 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.06 1.54 6.47 -2.39 -0.02 1.52 16 Total: -1.00 -80.34 330.37 3.44 -76.89 By element: Atomic # 1 Polarization: 35.52 SS G_CDS: 0.45 Total: 35.97 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: 5.77 Total: -2.03 kcal Atomic # 7 Polarization: -103.11 SS G_CDS: -3.88 Total: -106.99 kcal Atomic # 8 Polarization: -44.45 SS G_CDS: -0.80 Total: -45.25 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 1.90 Total: 41.40 kcal Total: -80.34 3.44 -76.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352681066.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.016 kcal (2) G-P(sol) polarization free energy of solvation -80.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds