Wall clock time and date at job start Tue Mar 31 2020 06:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86800 * 119.99811 * 333.95909 * 7 5 3 10 10 H 1.48501 * 109.46792 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.46850 * 299.99560 * 9 7 5 12 12 H 1.48492 * 109.47278 * 59.99696 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.46981 * 180.02562 * 16 14 13 18 18 C 1.52995 * 109.46939 * 180.02562 * 17 16 14 19 19 O 1.42907 * 109.46999 * 180.02562 * 18 17 16 20 20 C 1.35917 * 116.99895 * 179.97438 * 19 18 17 21 21 C 1.39129 * 120.47028 * 179.72414 * 20 19 18 22 22 C 1.38537 * 118.37020 * 179.71806 * 21 20 19 23 23 C 1.38255 * 119.22562 * 0.57231 * 22 21 20 24 24 N 1.31852 * 120.88157 * 359.68995 * 23 22 21 25 25 C 1.31843 * 121.77864 * 0.02562 * 24 23 22 26 26 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 28 28 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 29 29 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 30 30 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 31 31 H 0.96996 * 120.00478 * 354.97061 * 8 7 5 32 32 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 33 33 H 1.08999 * 109.47161 * 300.00319 * 16 14 13 34 34 H 1.08996 * 109.46861 * 60.00556 * 16 14 13 35 35 H 1.08999 * 109.47408 * 300.00136 * 17 16 14 36 36 H 1.08999 * 109.46846 * 60.00007 * 17 16 14 37 37 H 1.09010 * 109.47132 * 299.99658 * 18 17 16 38 38 H 1.08999 * 109.47677 * 60.00110 * 18 17 16 39 39 H 1.07998 * 120.81432 * 359.97438 * 21 20 19 40 40 H 1.08004 * 120.39121 * 180.26021 * 22 21 20 41 41 H 1.07999 * 119.56185 * 179.70397 * 23 22 21 42 42 H 1.08005 * 119.65232 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1763 1.0612 2.9141 10 1 4.0195 0.5178 4.0091 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 6 -1.3523 3.8846 -2.5713 18 6 -1.7415 4.5631 -3.8862 19 8 -3.0679 5.0840 -3.7789 20 6 -3.5699 5.7230 -4.8685 21 6 -4.8560 6.2530 -4.8453 22 6 -5.3217 6.9006 -5.9780 23 6 -4.5044 6.9880 -7.0897 24 7 -3.2919 6.4699 -7.0806 25 6 -2.8093 5.8507 -6.0214 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.8117 0.4042 0.4384 32 1 2.2954 2.1150 -1.9977 33 1 0.7620 4.1421 -2.8933 34 1 0.1091 2.6000 -3.4965 35 1 -2.0464 3.0703 -2.3637 36 1 -1.3928 4.6121 -1.7606 37 1 -1.0474 5.3775 -4.0942 38 1 -1.7010 3.8353 -4.6966 39 1 -5.4747 6.1653 -3.9644 40 1 -6.3135 7.3278 -5.9943 41 1 -4.8637 7.4874 -7.9772 42 1 -1.8114 5.4386 -6.0518 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358050714.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:18 Heat of formation + Delta-G solvation = -57.778432 kcal Electronic energy + Delta-G solvation = -22408.410740 eV Core-core repulsion = 18967.323407 eV Total energy + Delta-G solvation = -3441.087332 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.90863 -39.34859 -38.46910 -35.45244 -33.88128 -32.62119 -32.45273 -31.43069 -30.51576 -27.95147 -26.70728 -24.20902 -23.38771 -22.44062 -21.84778 -20.30907 -19.52836 -18.61501 -17.79050 -17.11645 -16.89566 -16.70036 -16.10330 -15.49581 -15.19081 -14.79331 -14.27025 -14.07058 -13.71237 -13.40769 -13.38187 -13.15803 -12.67724 -12.59770 -12.47659 -12.37901 -12.02753 -11.80397 -11.48852 -11.46399 -10.88090 -10.79303 -10.71130 -10.44494 -10.07708 -9.87893 -9.81055 -9.79853 -9.24928 -9.15559 -8.79566 -8.27533 -8.10189 -6.63437 -4.22565 0.74762 0.93653 2.71396 3.22160 3.39576 3.44597 3.44686 3.60166 3.96812 4.15344 4.30824 4.42366 4.49786 4.64579 4.67547 4.79871 4.86901 4.99355 5.05695 5.15067 5.22010 5.24205 5.41148 5.61622 5.65643 5.72380 5.96358 6.05653 6.08271 6.11098 6.20821 6.27040 6.68097 6.78216 6.92678 6.95540 7.03670 7.35087 7.40727 7.59135 7.66593 8.22205 8.46711 8.68629 8.97060 9.42218 10.74298 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.038833 B = 0.002432 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.862975 B =11511.058227 C =11757.074273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.250 3.750 4 H 0.040 0.960 5 C -0.630 4.630 6 H 0.062 0.938 7 C 0.048 3.952 8 N -0.886 5.886 9 Si 1.030 2.970 10 H -0.283 1.283 11 H -0.281 1.281 12 H -0.273 1.273 13 N -0.702 5.702 14 C 0.501 3.499 15 O -0.550 6.550 16 C -0.140 4.140 17 C -0.101 4.101 18 C 0.056 3.944 19 O -0.306 6.306 20 C 0.086 3.914 21 C -0.112 4.112 22 C -0.132 4.132 23 C 0.054 3.946 24 N -0.451 5.451 25 C 0.014 3.986 26 H 0.029 0.971 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.271 0.729 32 H 0.392 0.608 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.157 0.843 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.541 9.750 -14.687 24.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C 0.146 3.854 4 H 0.058 0.942 5 C -0.667 4.667 6 H 0.080 0.920 7 C -0.160 4.160 8 N -0.517 5.517 9 Si 0.857 3.143 10 H -0.209 1.209 11 H -0.207 1.207 12 H -0.199 1.199 13 N -0.350 5.350 14 C 0.286 3.714 15 O -0.429 6.429 16 C -0.180 4.180 17 C -0.139 4.139 18 C -0.019 4.019 19 O -0.218 6.218 20 C 0.037 3.963 21 C -0.139 4.139 22 C -0.152 4.152 23 C -0.104 4.104 24 N -0.160 5.160 25 C -0.144 4.144 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.225 0.775 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.161 0.839 40 H 0.159 0.841 41 H 0.174 0.826 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -17.471 9.435 -12.910 23.683 hybrid contribution -0.063 0.207 -1.485 1.501 sum -17.534 9.642 -14.395 24.650 Atomic orbital electron populations 1.21890 0.97419 0.98814 1.01949 1.22228 0.93666 0.99779 1.01341 1.19000 0.95727 0.88464 0.82162 0.94228 1.21980 0.89770 1.50102 1.04840 0.91982 1.25616 0.96612 0.91663 1.02122 1.70871 1.13905 1.36390 1.30558 0.84216 0.76035 0.77632 0.76431 1.20861 1.20690 1.19924 1.46277 1.14560 1.56019 1.18141 1.20311 0.82697 0.79310 0.89118 1.90675 1.50729 1.59974 1.41569 1.21550 0.97259 1.01506 0.97721 1.21206 0.95846 1.01388 0.95414 1.23006 0.80960 0.97831 1.00110 1.86115 1.32319 1.68822 1.34500 1.20120 0.94201 0.94028 0.87908 1.21001 0.93704 0.99047 1.00122 1.22033 1.01330 0.98621 0.93187 1.22669 0.90006 0.99228 0.98494 1.67532 1.14189 1.06849 1.27446 1.22982 1.00987 1.01407 0.88986 0.95158 0.93025 0.93292 0.93233 0.91915 0.91881 0.77486 0.89033 0.89150 0.89938 0.89862 0.91570 0.91605 0.83922 0.84086 0.82573 0.82397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.53 37.16 0.32 -2.55 16 2 C -0.13 -2.90 5.37 -26.73 -0.14 -3.04 16 3 C 0.25 5.84 1.84 -69.09 -0.13 5.71 16 4 H 0.04 1.02 6.12 -51.93 -0.32 0.70 16 5 C -0.63 -16.69 8.92 -34.44 -0.31 -17.00 16 6 H 0.06 1.71 7.96 -52.49 -0.42 1.30 16 7 C 0.05 1.34 5.15 -17.82 -0.09 1.24 16 8 N -0.89 -25.88 13.70 55.43 0.76 -25.12 16 9 Si 1.03 24.83 26.56 -169.99 -4.51 20.31 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.27 -6.27 6.34 56.52 0.36 -5.91 16 13 N -0.70 -13.42 5.03 -54.93 -0.28 -13.70 16 14 C 0.50 8.74 6.43 -10.98 -0.07 8.67 16 15 O -0.55 -11.49 13.13 5.55 0.07 -11.41 16 16 C -0.14 -1.63 5.70 -27.88 -0.16 -1.79 16 17 C -0.10 -1.16 4.87 -26.73 -0.13 -1.29 16 18 C 0.06 0.51 4.75 37.16 0.18 0.69 16 19 O -0.31 -3.38 10.15 -19.48 -0.20 -3.57 16 20 C 0.09 0.87 6.71 -39.08 -0.26 0.61 16 21 C -0.11 -0.97 10.13 -39.14 -0.40 -1.37 16 22 C -0.13 -0.93 10.11 -39.46 -0.40 -1.33 16 23 C 0.05 0.44 11.18 -17.54 -0.20 0.24 16 24 N -0.45 -4.77 10.36 -13.12 -0.14 -4.90 16 25 C 0.01 0.14 10.22 -17.37 -0.18 -0.03 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 1.09 7.89 -51.93 -0.41 0.68 16 28 H 0.05 0.95 5.63 -51.93 -0.29 0.66 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 1.46 5.77 -51.93 -0.30 1.16 16 31 H 0.27 7.82 8.73 -40.82 -0.36 7.46 16 32 H 0.39 6.61 8.53 -40.82 -0.35 6.26 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 36 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 37 H 0.07 0.52 7.68 -51.92 -0.40 0.12 16 38 H 0.07 0.51 7.68 -51.93 -0.40 0.11 16 39 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.14 0.56 8.06 -52.48 -0.42 0.13 16 41 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.16 1.29 6.32 -52.48 -0.33 0.96 16 LS Contribution 344.62 15.07 5.19 5.19 Total: -1.00 -32.19 344.62 -7.28 -39.46 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -6.21 Total: 4.97 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -1.97 Total: -11.23 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 0.35 Total: -43.72 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.12 Total: -14.99 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -4.51 Total: 20.31 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.19 -7.28 -39.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358050714.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.314 kcal (2) G-P(sol) polarization free energy of solvation -32.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds