Wall clock time and date at job start Tue Mar 31 2020 06:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86800 * 119.99811 * 333.95909 * 7 5 3 10 10 H 1.48501 * 109.46792 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.46850 * 299.99560 * 9 7 5 12 12 H 1.48492 * 109.47278 * 59.99696 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.46981 * 180.02562 * 16 14 13 18 18 C 1.52995 * 109.46939 * 180.02562 * 17 16 14 19 19 O 1.42907 * 109.46999 * 180.02562 * 18 17 16 20 20 C 1.35917 * 116.99895 * 179.97438 * 19 18 17 21 21 C 1.39129 * 120.47028 * 179.72414 * 20 19 18 22 22 C 1.38537 * 118.37020 * 179.71806 * 21 20 19 23 23 C 1.38255 * 119.22562 * 0.57231 * 22 21 20 24 24 N 1.31852 * 120.88157 * 359.68995 * 23 22 21 25 25 C 1.31843 * 121.77864 * 0.02562 * 24 23 22 26 26 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 28 28 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 29 29 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 30 30 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 31 31 H 0.96996 * 120.00478 * 354.97061 * 8 7 5 32 32 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 33 33 H 1.08999 * 109.47161 * 300.00319 * 16 14 13 34 34 H 1.08996 * 109.46861 * 60.00556 * 16 14 13 35 35 H 1.08999 * 109.47408 * 300.00136 * 17 16 14 36 36 H 1.08999 * 109.46846 * 60.00007 * 17 16 14 37 37 H 1.09010 * 109.47132 * 299.99658 * 18 17 16 38 38 H 1.08999 * 109.47677 * 60.00110 * 18 17 16 39 39 H 1.07998 * 120.81432 * 359.97438 * 21 20 19 40 40 H 1.08004 * 120.39121 * 180.26021 * 22 21 20 41 41 H 1.07999 * 119.56185 * 179.70397 * 23 22 21 42 42 H 1.08005 * 119.65232 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1763 1.0612 2.9141 10 1 4.0195 0.5178 4.0091 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 6 -1.3523 3.8846 -2.5713 18 6 -1.7415 4.5631 -3.8862 19 8 -3.0679 5.0840 -3.7789 20 6 -3.5699 5.7230 -4.8685 21 6 -4.8560 6.2530 -4.8453 22 6 -5.3217 6.9006 -5.9780 23 6 -4.5044 6.9880 -7.0897 24 7 -3.2919 6.4699 -7.0806 25 6 -2.8093 5.8507 -6.0214 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.8117 0.4042 0.4384 32 1 2.2954 2.1150 -1.9977 33 1 0.7620 4.1421 -2.8933 34 1 0.1091 2.6000 -3.4965 35 1 -2.0464 3.0703 -2.3637 36 1 -1.3928 4.6121 -1.7606 37 1 -1.0474 5.3775 -4.0942 38 1 -1.7010 3.8353 -4.6966 39 1 -5.4747 6.1653 -3.9644 40 1 -6.3135 7.3278 -5.9943 41 1 -4.8637 7.4874 -7.9772 42 1 -1.8114 5.4386 -6.0518 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358050714.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:18 Heat of formation + Delta-G solvation = -79.915122 kcal Electronic energy + Delta-G solvation = -22409.370659 eV Core-core repulsion = 18967.323407 eV Total energy + Delta-G solvation = -3442.047251 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.57230 -40.78466 -39.20796 -37.14036 -34.89409 -34.46283 -33.32364 -32.97563 -31.20341 -29.43796 -28.00094 -24.99035 -24.35052 -23.98534 -22.84314 -21.76551 -21.13126 -19.82378 -19.21193 -18.02890 -17.55814 -17.51242 -17.32237 -17.04872 -16.46298 -15.63567 -15.35927 -15.21867 -14.98122 -14.70280 -14.53287 -14.37751 -14.23174 -13.96236 -13.76032 -13.46421 -13.27049 -12.96187 -12.65839 -12.52929 -12.47200 -12.32449 -12.24654 -11.77518 -11.69545 -11.56587 -11.22477 -10.68494 -10.68018 -10.44760 -10.40863 -9.75028 -9.46573 -8.80940 -6.40135 0.13907 0.28940 1.45987 1.47978 1.68984 1.85101 1.97568 2.41899 2.66126 2.81761 2.93002 3.54848 3.65976 3.79020 3.91432 3.94349 4.05345 4.11251 4.31055 4.31783 4.36826 4.40152 4.44317 4.54202 4.56247 4.64901 4.70287 4.89052 5.00509 5.05993 5.09601 5.14545 5.22799 5.24483 5.31351 5.55529 5.58916 5.73023 5.73273 6.03648 6.24513 6.56068 6.92624 6.96171 7.28219 7.53049 8.55568 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.038833 B = 0.002432 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.862975 B =11511.058227 C =11757.074273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.128 4.128 3 C 0.253 3.747 4 H 0.018 0.982 5 C -0.625 4.625 6 H 0.043 0.957 7 C 0.005 3.995 8 N -0.916 5.916 9 Si 1.062 2.938 10 H -0.281 1.281 11 H -0.275 1.275 12 H -0.257 1.257 13 N -0.705 5.705 14 C 0.496 3.504 15 O -0.586 6.586 16 C -0.126 4.126 17 C -0.094 4.094 18 C 0.059 3.941 19 O -0.325 6.325 20 C 0.067 3.933 21 C -0.124 4.124 22 C -0.123 4.123 23 C 0.047 3.953 24 N -0.479 5.479 25 C 0.002 3.998 26 H 0.053 0.947 27 H 0.036 0.964 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.262 0.738 32 H 0.404 0.596 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.153 0.847 40 H 0.175 0.825 41 H 0.183 0.817 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.501 10.462 -16.249 27.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.167 4.167 3 C 0.148 3.852 4 H 0.036 0.964 5 C -0.663 4.663 6 H 0.061 0.939 7 C -0.198 4.198 8 N -0.549 5.549 9 Si 0.885 3.115 10 H -0.207 1.207 11 H -0.200 1.200 12 H -0.181 1.181 13 N -0.354 5.354 14 C 0.284 3.716 15 O -0.467 6.467 16 C -0.166 4.166 17 C -0.133 4.133 18 C -0.016 4.016 19 O -0.238 6.238 20 C 0.019 3.981 21 C -0.150 4.150 22 C -0.142 4.142 23 C -0.111 4.111 24 N -0.189 5.189 25 C -0.155 4.155 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.239 0.761 33 H 0.136 0.864 34 H 0.141 0.859 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.171 0.829 40 H 0.193 0.807 41 H 0.200 0.800 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -19.436 10.158 -14.511 26.297 hybrid contribution 0.492 0.061 -1.085 1.193 sum -18.944 10.219 -15.595 26.580 Atomic orbital electron populations 1.21762 0.95554 1.00206 1.01433 1.22116 0.95228 0.98527 1.00828 1.18673 0.93362 0.89472 0.83662 0.96392 1.22167 0.91573 1.48614 1.03931 0.93871 1.26638 0.96749 0.91381 1.04983 1.70959 1.15053 1.38876 1.30055 0.83770 0.75776 0.78216 0.73710 1.20689 1.20049 1.18146 1.46128 1.15815 1.56422 1.17074 1.21265 0.81347 0.78282 0.90695 1.90662 1.51554 1.61053 1.43462 1.21519 0.97621 1.02548 0.94900 1.21082 0.95485 1.00468 0.96231 1.22980 0.80846 0.98713 0.99016 1.86067 1.33082 1.69361 1.35273 1.20308 0.95009 0.94896 0.87853 1.21346 0.93490 0.99001 1.01194 1.22393 1.02482 0.97356 0.91989 1.23214 0.89461 0.98603 0.99820 1.67553 1.15557 1.07872 1.27945 1.23162 1.01625 1.01759 0.88926 0.92750 0.94473 0.92874 0.92750 0.93438 0.92882 0.76136 0.86411 0.85948 0.91565 0.91916 0.89953 0.89708 0.82928 0.80727 0.80047 0.81304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.09 8.53 71.98 0.61 -4.48 16 2 C -0.13 -5.54 5.37 30.60 0.16 -5.38 16 3 C 0.25 11.75 1.84 44.25 0.08 11.83 16 4 H 0.02 0.93 6.12 -2.39 -0.01 0.92 16 5 C -0.63 -33.41 8.92 25.60 0.23 -33.18 16 6 H 0.04 2.42 7.96 -2.91 -0.02 2.40 16 7 C 0.01 0.31 5.15 84.66 0.44 0.74 16 8 N -0.92 -54.44 13.70 21.45 0.29 -54.14 16 9 Si 1.06 50.31 26.56 68.60 1.82 52.13 16 10 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 11 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.26 -11.38 6.34 99.48 0.63 -10.75 16 13 N -0.71 -26.17 5.03 -446.10 -2.24 -28.42 16 14 C 0.50 16.62 6.43 87.66 0.56 17.18 16 15 O -0.59 -24.15 13.13 -3.04 -0.04 -24.19 16 16 C -0.13 -2.60 5.70 29.85 0.17 -2.43 16 17 C -0.09 -2.03 4.87 30.59 0.15 -1.88 16 18 C 0.06 0.96 4.75 71.98 0.34 1.31 16 19 O -0.33 -6.84 10.15 -92.62 -0.94 -7.78 16 20 C 0.07 1.29 6.71 22.60 0.15 1.44 16 21 C -0.12 -1.94 10.13 22.56 0.23 -1.72 16 22 C -0.12 -1.42 10.11 22.35 0.23 -1.19 16 23 C 0.05 0.66 11.18 84.69 0.95 1.60 16 24 N -0.48 -9.42 10.36 -195.43 -2.02 -11.44 16 25 C 0.00 0.05 10.22 84.80 0.87 0.91 16 26 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 27 H 0.04 1.52 7.89 -2.39 -0.02 1.50 16 28 H 0.05 1.98 5.63 -2.39 -0.01 1.97 16 29 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.05 2.18 5.77 -2.39 -0.01 2.16 16 31 H 0.26 15.51 8.73 -92.71 -0.81 14.70 16 32 H 0.40 13.02 8.53 -92.71 -0.79 12.23 16 33 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.07 1.63 8.10 -2.39 -0.02 1.61 16 36 H 0.06 1.60 8.10 -2.39 -0.02 1.58 16 37 H 0.08 1.08 7.68 -2.38 -0.02 1.06 16 38 H 0.08 1.07 7.68 -2.39 -0.02 1.05 16 39 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 40 H 0.18 0.73 8.06 -2.91 -0.02 0.71 16 41 H 0.18 1.43 8.06 -2.91 -0.02 1.40 16 42 H 0.17 2.48 6.32 -2.91 -0.02 2.47 16 Total: -1.00 -70.96 344.62 2.16 -68.80 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 0.12 Total: 20.27 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: 5.17 Total: -15.24 kcal Atomic # 7 Polarization: -90.03 SS G_CDS: -3.97 Total: -94.00 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: -0.98 Total: -31.97 kcal Atomic # 14 Polarization: 50.31 SS G_CDS: 1.82 Total: 52.13 kcal Total: -70.96 2.16 -68.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358050714.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.113 kcal (2) G-P(sol) polarization free energy of solvation -70.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds