Wall clock time and date at job start Tue Mar 31 2020 06:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50702 * 120.00173 * 2 1 4 4 N 1.46491 * 109.47105 * 125.00092 * 3 2 1 5 5 C 1.46506 * 119.99969 * 265.73365 * 4 3 2 6 6 C 1.50700 * 109.46901 * 269.99609 * 5 4 3 7 7 H 1.08005 * 119.99970 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00302 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99628 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00245 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.46753 * 60.00127 * 10 8 6 12 12 H 1.48499 * 109.46961 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47161 * 300.00208 * 10 8 6 14 14 C 1.34769 * 120.00224 * 85.72767 * 4 3 2 15 15 O 1.21590 * 120.00576 * 174.66108 * 14 4 3 16 16 C 1.47512 * 120.00168 * 354.94036 * 14 4 3 17 17 C 1.36824 * 126.94997 * 173.92539 * 16 14 4 18 18 C 1.41261 * 103.84765 * 179.87797 * 17 16 14 19 19 C 1.50698 * 126.70242 * 180.14117 * 18 17 16 20 20 H 1.09004 * 109.47269 * 205.28364 * 19 18 17 21 21 C 1.53002 * 109.47172 * 325.27793 * 19 18 17 22 22 C 1.53005 * 109.47483 * 85.28254 * 19 18 17 23 23 C 1.52991 * 109.47087 * 175.00217 * 22 19 18 24 24 N 1.30126 * 106.59123 * 0.39612 * 18 17 16 25 25 O 1.20888 * 111.97937 * 359.74251 * 24 18 17 26 26 H 1.07995 * 120.00140 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.00283 * 179.97438 * 1 2 3 28 28 H 1.07999 * 120.00009 * 180.02562 * 2 1 3 29 29 H 1.09006 * 109.46960 * 5.00248 * 3 2 1 30 30 H 1.08998 * 109.47047 * 244.99904 * 3 2 1 31 31 H 1.09000 * 109.47279 * 29.99936 * 5 4 3 32 32 H 1.09002 * 109.47337 * 149.99760 * 5 4 3 33 33 H 0.96994 * 119.99774 * 179.97438 * 9 8 6 34 34 H 1.08004 * 128.07077 * 0.02562 * 17 16 14 35 35 H 1.09000 * 109.47182 * 300.00341 * 21 19 18 36 36 H 1.09000 * 109.46872 * 60.00513 * 21 19 18 37 37 H 1.08997 * 109.47349 * 179.97438 * 21 19 18 38 38 H 1.09001 * 109.46613 * 295.00039 * 22 19 18 39 39 H 1.08996 * 109.46906 * 54.99151 * 22 19 18 40 40 H 1.09009 * 109.46911 * 180.02562 * 23 22 19 41 41 H 1.09001 * 109.47249 * 299.99432 * 23 22 19 42 42 H 1.08996 * 109.48119 * 59.99676 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3318 1.1313 5 6 2.5902 1.9496 2.3970 6 6 2.9603 3.4103 2.3835 7 1 3.4470 3.8361 1.5184 8 6 2.6767 4.2036 3.4750 9 7 2.0835 3.6852 4.5282 10 14 3.1347 6.0144 3.4579 11 1 2.4396 6.6902 2.3330 12 1 2.7258 6.6405 4.7409 13 1 4.6034 6.1519 3.2865 14 6 4.2207 0.7881 1.0080 15 8 5.0270 0.8953 1.9118 16 6 4.5878 0.0683 -0.2262 17 6 5.8184 -0.4345 -0.5499 18 6 5.6210 -1.0197 -1.8204 19 6 6.6552 -1.7293 -2.6557 20 1 6.3733 -1.6741 -3.7072 21 6 8.0172 -1.0611 -2.4572 22 6 6.7391 -3.1956 -2.2266 23 6 7.6968 -3.9447 -3.1551 24 7 4.3729 -0.8215 -2.1309 25 8 3.7809 -0.2215 -1.2643 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3586 2.1317 0.0896 30 1 2.6213 1.4026 -0.9314 31 1 1.5122 1.8489 2.5230 32 1 3.1004 1.4532 3.2226 33 1 1.8843 4.2431 5.2962 34 1 6.7278 -0.3954 0.0314 35 1 7.9575 -0.0165 -2.7629 36 1 8.2992 -1.1164 -1.4057 37 1 8.7654 -1.5746 -3.0610 38 1 7.1065 -3.2537 -1.2020 39 1 5.7491 -3.6480 -2.2837 40 1 7.7562 -4.9894 -2.8497 41 1 7.3294 -3.8865 -4.1797 42 1 8.6868 -3.4923 -3.0980 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359419324.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:55 Heat of formation + Delta-G solvation = 36.784237 kcal Electronic energy + Delta-G solvation = -23528.875156 eV Core-core repulsion = 20091.888368 eV Total energy + Delta-G solvation = -3436.986787 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 3.66 seconds Orbital eigenvalues (eV) -44.84820 -39.09148 -37.28231 -35.87268 -33.28560 -33.15868 -32.21643 -31.61026 -29.68365 -27.76943 -25.71943 -25.47770 -24.09951 -22.97533 -21.94570 -20.79491 -19.97918 -18.87384 -17.61896 -17.23009 -16.54400 -16.05169 -15.63451 -15.20328 -14.88906 -14.55373 -14.36946 -14.11237 -13.82655 -13.67126 -13.13079 -12.99360 -12.61241 -12.40611 -12.25115 -12.04729 -11.74764 -11.54087 -11.39900 -11.34652 -11.17223 -11.06115 -10.92673 -10.86587 -10.63428 -10.24601 -9.99186 -9.74933 -9.50067 -9.46787 -9.13721 -8.47274 -7.87703 -6.08882 -4.14144 1.10199 2.14642 2.49585 2.98255 3.30834 3.35168 3.37753 3.54454 3.81241 3.96106 4.40080 4.47946 4.66600 4.81973 4.91365 5.06243 5.16329 5.21939 5.25970 5.26954 5.29591 5.39270 5.45017 5.51516 5.64070 5.70128 5.72556 5.75477 5.79274 6.02719 6.05413 6.07433 6.08706 6.21809 6.84620 6.86375 7.00777 7.29246 7.38321 7.85767 8.08557 8.14350 8.25096 8.65383 8.90572 9.50812 10.99332 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020262 B = 0.003923 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.549104 B = 7136.408502 C = 7993.266402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.160 4.160 3 C 0.132 3.868 4 N -0.574 5.574 5 C 0.247 3.753 6 C -0.531 4.531 7 H 0.059 0.941 8 C 0.063 3.937 9 N -0.893 5.893 10 Si 0.900 3.100 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.586 3.414 15 O -0.509 6.509 16 C -0.062 4.062 17 C -0.166 4.166 18 C 0.016 3.984 19 C -0.011 4.011 20 H 0.087 0.913 21 C -0.148 4.148 22 C -0.116 4.116 23 C -0.152 4.152 24 N -0.359 5.359 25 O 0.117 5.883 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.040 0.960 32 H 0.046 0.954 33 H 0.265 0.735 34 H 0.178 0.822 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.726 -11.884 -14.553 19.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.179 4.179 3 C 0.008 3.992 4 N -0.304 5.304 5 C 0.129 3.871 6 C -0.569 4.569 7 H 0.077 0.923 8 C -0.139 4.139 9 N -0.532 5.532 10 Si 0.727 3.273 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.201 1.201 14 C 0.369 3.631 15 O -0.385 6.385 16 C -0.128 4.128 17 C -0.188 4.188 18 C -0.142 4.142 19 C -0.030 4.030 20 H 0.106 0.894 21 C -0.205 4.205 22 C -0.155 4.155 23 C -0.209 4.209 24 N -0.061 5.061 25 O 0.047 5.953 26 H 0.118 0.882 27 H 0.113 0.887 28 H 0.121 0.879 29 H 0.114 0.886 30 H 0.098 0.902 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.195 0.805 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.308 -12.051 -14.893 19.879 hybrid contribution 0.709 1.078 0.581 1.415 sum 6.017 -10.973 -14.312 19.012 Atomic orbital electron populations 1.23792 0.95704 1.01760 1.00849 1.23319 0.96284 0.98695 0.99582 1.20784 0.93118 0.95925 0.89344 1.48245 1.11833 1.54527 1.15786 1.19440 0.96181 0.92815 0.78638 1.21365 1.39785 0.93671 1.02108 0.92271 1.24921 0.94911 0.98983 0.95109 1.69920 1.41427 1.36368 1.05481 0.86533 0.79092 0.84430 0.77245 1.20175 1.21142 1.20110 1.16683 0.83463 0.79583 0.83392 1.90853 1.49140 1.59787 1.38722 1.24832 0.91333 1.04042 0.92613 1.22734 0.98955 1.00920 0.96237 1.23510 0.92882 1.02199 0.95588 1.19560 0.91607 0.93829 0.97991 0.89436 1.21899 0.95118 1.00760 1.02773 1.21563 1.00409 0.93267 1.00218 1.21815 0.99550 1.00067 0.99484 1.73668 1.08410 1.11735 1.12267 1.85180 1.35663 1.53617 1.20844 0.88229 0.88742 0.87867 0.88613 0.90188 0.94175 0.93582 0.92546 0.80453 0.92159 0.91815 0.91391 0.91301 0.91735 0.92506 0.92645 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.47 14.32 29.01 0.42 -2.05 16 2 C -0.16 -2.43 8.77 -36.03 -0.32 -2.74 16 3 C 0.13 2.26 5.43 -5.20 -0.03 2.23 16 4 N -0.57 -12.20 2.45 -177.68 -0.44 -12.63 16 5 C 0.25 6.31 5.10 -5.19 -0.03 6.28 16 6 C -0.53 -14.72 9.39 -34.44 -0.32 -15.04 16 7 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.00 13.29 55.43 0.74 -25.27 16 10 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.59 12.40 7.63 -12.48 -0.10 12.30 16 15 O -0.51 -12.53 16.55 5.29 0.09 -12.44 16 16 C -0.06 -1.07 6.78 -36.31 -0.25 -1.32 16 17 C -0.17 -2.47 10.13 -38.95 -0.39 -2.87 16 18 C 0.02 0.22 6.20 -82.17 -0.51 -0.29 16 19 C -0.01 -0.11 2.85 -91.77 -0.26 -0.37 16 20 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 21 C -0.15 -1.24 8.56 37.16 0.32 -0.93 16 22 C -0.12 -1.03 5.38 -26.73 -0.14 -1.17 16 23 C -0.15 -1.04 9.67 37.15 0.36 -0.68 16 24 N -0.36 -5.45 12.04 33.52 0.40 -5.04 16 25 O 0.12 1.87 6.76 15.55 0.11 1.98 16 26 H 0.10 1.28 7.84 -52.49 -0.41 0.87 16 27 H 0.09 1.11 8.06 -52.49 -0.42 0.68 16 28 H 0.10 1.57 7.36 -52.49 -0.39 1.19 16 29 H 0.10 1.63 7.69 -51.93 -0.40 1.23 16 30 H 0.08 1.28 5.89 -51.93 -0.31 0.97 16 31 H 0.04 1.03 8.07 -51.93 -0.42 0.61 16 32 H 0.05 1.31 7.50 -51.93 -0.39 0.92 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.18 2.38 7.65 -52.48 -0.40 1.98 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.53 7.48 -51.93 -0.39 0.15 16 37 H 0.07 0.45 6.56 -51.93 -0.34 0.11 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.36 8.14 -51.92 -0.42 -0.07 16 41 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.36 6.56 -51.93 -0.34 0.02 16 LS Contribution 353.27 15.07 5.32 5.32 Total: -1.00 -30.96 353.27 -6.44 -37.39 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -6.29 Total: -0.85 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -1.35 Total: -4.96 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: 0.70 Total: -42.94 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.19 Total: -10.46 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.96 -6.44 -37.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359419324.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.178 kcal (2) G-P(sol) polarization free energy of solvation -30.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.66 seconds