Wall clock time and date at job start Tue Mar 31 2020 06:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50702 * 120.00173 * 2 1 4 4 N 1.46491 * 109.47105 * 125.00092 * 3 2 1 5 5 C 1.46506 * 119.99969 * 265.73365 * 4 3 2 6 6 C 1.50700 * 109.46901 * 269.99609 * 5 4 3 7 7 H 1.08005 * 119.99970 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00302 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99628 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00245 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.46753 * 60.00127 * 10 8 6 12 12 H 1.48499 * 109.46961 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47161 * 300.00208 * 10 8 6 14 14 C 1.34769 * 120.00224 * 85.72767 * 4 3 2 15 15 O 1.21590 * 120.00576 * 174.66108 * 14 4 3 16 16 C 1.47512 * 120.00168 * 354.94036 * 14 4 3 17 17 C 1.36824 * 126.94997 * 173.92539 * 16 14 4 18 18 C 1.41261 * 103.84765 * 179.87797 * 17 16 14 19 19 C 1.50698 * 126.70242 * 180.14117 * 18 17 16 20 20 H 1.09004 * 109.47269 * 205.28364 * 19 18 17 21 21 C 1.53002 * 109.47172 * 325.27793 * 19 18 17 22 22 C 1.53005 * 109.47483 * 85.28254 * 19 18 17 23 23 C 1.52991 * 109.47087 * 175.00217 * 22 19 18 24 24 N 1.30126 * 106.59123 * 0.39612 * 18 17 16 25 25 O 1.20888 * 111.97937 * 359.74251 * 24 18 17 26 26 H 1.07995 * 120.00140 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.00283 * 179.97438 * 1 2 3 28 28 H 1.07999 * 120.00009 * 180.02562 * 2 1 3 29 29 H 1.09006 * 109.46960 * 5.00248 * 3 2 1 30 30 H 1.08998 * 109.47047 * 244.99904 * 3 2 1 31 31 H 1.09000 * 109.47279 * 29.99936 * 5 4 3 32 32 H 1.09002 * 109.47337 * 149.99760 * 5 4 3 33 33 H 0.96994 * 119.99774 * 179.97438 * 9 8 6 34 34 H 1.08004 * 128.07077 * 0.02562 * 17 16 14 35 35 H 1.09000 * 109.47182 * 300.00341 * 21 19 18 36 36 H 1.09000 * 109.46872 * 60.00513 * 21 19 18 37 37 H 1.08997 * 109.47349 * 179.97438 * 21 19 18 38 38 H 1.09001 * 109.46613 * 295.00039 * 22 19 18 39 39 H 1.08996 * 109.46906 * 54.99151 * 22 19 18 40 40 H 1.09009 * 109.46911 * 180.02562 * 23 22 19 41 41 H 1.09001 * 109.47249 * 299.99432 * 23 22 19 42 42 H 1.08996 * 109.48119 * 59.99676 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3318 1.1313 5 6 2.5902 1.9496 2.3970 6 6 2.9603 3.4103 2.3835 7 1 3.4470 3.8361 1.5184 8 6 2.6767 4.2036 3.4750 9 7 2.0835 3.6852 4.5282 10 14 3.1347 6.0144 3.4579 11 1 2.4396 6.6902 2.3330 12 1 2.7258 6.6405 4.7409 13 1 4.6034 6.1519 3.2865 14 6 4.2207 0.7881 1.0080 15 8 5.0270 0.8953 1.9118 16 6 4.5878 0.0683 -0.2262 17 6 5.8184 -0.4345 -0.5499 18 6 5.6210 -1.0197 -1.8204 19 6 6.6552 -1.7293 -2.6557 20 1 6.3733 -1.6741 -3.7072 21 6 8.0172 -1.0611 -2.4572 22 6 6.7391 -3.1956 -2.2266 23 6 7.6968 -3.9447 -3.1551 24 7 4.3729 -0.8215 -2.1309 25 8 3.7809 -0.2215 -1.2643 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3586 2.1317 0.0896 30 1 2.6213 1.4026 -0.9314 31 1 1.5122 1.8489 2.5230 32 1 3.1004 1.4532 3.2226 33 1 1.8843 4.2431 5.2962 34 1 6.7278 -0.3954 0.0314 35 1 7.9575 -0.0165 -2.7629 36 1 8.2992 -1.1164 -1.4057 37 1 8.7654 -1.5746 -3.0610 38 1 7.1065 -3.2537 -1.2020 39 1 5.7491 -3.6480 -2.2837 40 1 7.7562 -4.9894 -2.8497 41 1 7.3294 -3.8865 -4.1797 42 1 8.6868 -3.4923 -3.0980 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359419324.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:54 Heat of formation + Delta-G solvation = 19.540900 kcal Electronic energy + Delta-G solvation = -23529.622883 eV Core-core repulsion = 20091.888368 eV Total energy + Delta-G solvation = -3437.734515 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -46.06646 -40.78709 -38.15908 -37.43534 -35.17221 -34.21297 -33.78566 -33.01286 -30.37677 -29.69209 -27.16560 -26.29099 -25.89331 -24.08154 -23.45535 -21.89461 -21.17095 -20.11882 -18.94891 -18.61533 -18.59466 -17.41936 -17.28342 -16.40828 -16.17139 -15.89619 -15.86125 -15.32638 -14.95198 -14.66486 -14.52735 -14.34197 -14.09872 -13.63555 -13.39059 -13.12519 -12.99901 -12.91750 -12.85526 -12.59168 -12.47982 -12.29313 -12.21779 -12.14667 -11.94637 -11.72507 -11.57200 -11.24783 -11.05598 -10.79649 -10.63910 -10.33780 -9.65871 -8.23070 -6.37386 -0.27053 0.99230 1.27169 1.39493 1.42921 1.50331 1.59101 1.93661 2.30389 2.42897 2.92638 3.07622 3.30164 3.73732 3.89334 3.99264 4.03212 4.08678 4.13909 4.17758 4.38627 4.45934 4.56546 4.62378 4.74873 4.79705 4.86656 4.94845 5.02564 5.03386 5.09175 5.14089 5.15681 5.19062 5.38934 5.40767 5.49472 5.69216 5.71395 5.87666 6.01464 6.39758 6.68336 6.90111 7.07237 7.33112 8.84493 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020262 B = 0.003923 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.549104 B = 7136.408502 C = 7993.266402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.181 4.181 3 C 0.133 3.867 4 N -0.579 5.579 5 C 0.264 3.736 6 C -0.547 4.547 7 H 0.054 0.946 8 C 0.013 3.987 9 N -0.925 5.925 10 Si 0.966 3.034 11 H -0.262 1.262 12 H -0.278 1.278 13 H -0.277 1.277 14 C 0.585 3.415 15 O -0.556 6.556 16 C -0.081 4.081 17 C -0.151 4.151 18 C 0.030 3.970 19 C -0.011 4.011 20 H 0.095 0.905 21 C -0.147 4.147 22 C -0.114 4.114 23 C -0.148 4.148 24 N -0.365 5.365 25 O 0.114 5.886 26 H 0.106 0.894 27 H 0.118 0.882 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.034 0.966 32 H 0.007 0.993 33 H 0.269 0.731 34 H 0.191 0.809 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.052 0.948 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.346 -12.179 -16.537 21.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.200 4.200 3 C 0.011 3.989 4 N -0.308 5.308 5 C 0.144 3.856 6 C -0.586 4.586 7 H 0.073 0.927 8 C -0.187 4.187 9 N -0.564 5.564 10 Si 0.790 3.210 11 H -0.186 1.186 12 H -0.203 1.203 13 H -0.203 1.203 14 C 0.370 3.630 15 O -0.435 6.435 16 C -0.147 4.147 17 C -0.173 4.173 18 C -0.129 4.129 19 C -0.030 4.030 20 H 0.114 0.886 21 C -0.204 4.204 22 C -0.153 4.153 23 C -0.205 4.205 24 N -0.069 5.069 25 O 0.045 5.955 26 H 0.124 0.876 27 H 0.136 0.864 28 H 0.120 0.880 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.052 0.948 32 H 0.025 0.975 33 H 0.077 0.923 34 H 0.209 0.791 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.110 0.890 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.895 -12.354 -16.917 21.761 hybrid contribution 0.495 1.076 1.136 1.641 sum 6.391 -11.278 -15.781 20.423 Atomic orbital electron populations 1.24057 0.95063 1.03207 0.97632 1.23140 0.96852 0.97510 1.02470 1.20933 0.92655 0.97182 0.88138 1.48196 1.12856 1.54180 1.15547 1.18917 0.95033 0.91924 0.79710 1.21627 1.39925 0.94807 1.02222 0.92731 1.25796 0.94631 1.03619 0.94605 1.70030 1.42188 1.38100 1.06083 0.85488 0.78581 0.78939 0.77950 1.18614 1.20281 1.20251 1.17009 0.82747 0.79089 0.84156 1.90808 1.50365 1.61608 1.40757 1.24122 0.92488 1.05794 0.92298 1.23033 0.98469 0.99219 0.96620 1.24052 0.92827 1.00936 0.95053 1.19787 0.91287 0.94237 0.97673 0.88642 1.21924 0.94611 1.00587 1.03316 1.21552 1.00449 0.92524 1.00748 1.21795 0.99450 1.00151 0.99125 1.73662 1.09272 1.11910 1.12012 1.85180 1.35581 1.54187 1.20559 0.87581 0.86412 0.88008 0.88807 0.89098 0.94830 0.97463 0.92251 0.79132 0.92686 0.91818 0.89028 0.91483 0.92889 0.91951 0.92158 0.91066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.11 14.32 67.78 0.97 -3.14 16 2 C -0.18 -5.43 8.77 25.65 0.23 -5.20 16 3 C 0.13 4.60 5.43 85.64 0.46 5.07 16 4 N -0.58 -25.51 2.45 -834.31 -2.04 -27.55 16 5 C 0.26 14.10 5.10 85.63 0.44 14.53 16 6 C -0.55 -31.16 9.39 25.60 0.24 -30.92 16 7 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 8 C 0.01 0.74 5.46 84.65 0.46 1.21 16 9 N -0.92 -54.86 13.29 21.45 0.28 -54.58 16 10 Si 0.97 44.29 29.54 68.60 2.03 46.31 16 11 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 12 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 13 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 14 C 0.58 25.68 7.63 86.69 0.66 26.34 16 15 O -0.56 -28.67 16.55 -4.00 -0.07 -28.74 16 16 C -0.08 -2.83 6.78 24.39 0.17 -2.67 16 17 C -0.15 -4.40 10.13 22.68 0.23 -4.17 16 18 C 0.03 0.76 6.20 43.55 0.27 1.03 16 19 C -0.01 -0.19 2.85 -11.54 -0.03 -0.22 16 20 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 21 C -0.15 -2.08 8.56 71.98 0.62 -1.46 16 22 C -0.11 -1.77 5.38 30.59 0.16 -1.61 16 23 C -0.15 -1.60 9.67 71.98 0.70 -0.91 16 24 N -0.37 -10.68 12.04 -48.87 -0.59 -11.26 16 25 O 0.11 3.60 6.76 65.84 0.44 4.04 16 26 H 0.11 2.56 7.84 -2.91 -0.02 2.54 16 27 H 0.12 2.46 8.06 -2.91 -0.02 2.43 16 28 H 0.10 3.09 7.36 -2.91 -0.02 3.07 16 29 H 0.09 3.23 7.69 -2.38 -0.02 3.22 16 30 H 0.09 2.92 5.89 -2.39 -0.01 2.90 16 31 H 0.03 1.81 8.07 -2.39 -0.02 1.79 16 32 H 0.01 0.44 7.50 -2.39 -0.02 0.42 16 33 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 34 H 0.19 4.96 7.65 -2.91 -0.02 4.93 16 35 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.06 0.91 7.48 -2.39 -0.02 0.90 16 37 H 0.09 0.89 6.56 -2.39 -0.02 0.87 16 38 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 41 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.07 0.62 6.56 -2.39 -0.02 0.61 16 Total: -1.00 -68.22 353.27 6.63 -61.59 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 1.00 Total: 12.31 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: 5.57 Total: -2.13 kcal Atomic # 7 Polarization: -91.05 SS G_CDS: -2.35 Total: -93.39 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: 0.38 Total: -24.70 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -68.22 6.63 -61.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359419324.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.129 kcal (2) G-P(sol) polarization free energy of solvation -68.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds