Wall clock time and date at job start Tue Mar 31 2020 07:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47130 * 2 1 4 4 N 1.46498 * 109.47008 * 179.97438 * 3 2 1 5 5 C 1.36875 * 120.00517 * 278.58688 * 4 3 2 6 6 H 1.07992 * 119.99878 * 52.69628 * 5 4 3 7 7 C 1.39045 * 120.00036 * 232.70147 * 5 4 3 8 8 N 1.31370 * 120.00131 * 40.39747 * 7 5 4 9 9 Si 1.86797 * 119.99908 * 220.39594 * 7 5 4 10 10 H 1.48495 * 109.47411 * 60.00123 * 9 7 5 11 11 H 1.48504 * 109.46917 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47306 * 299.99979 * 9 7 5 13 13 C 1.34786 * 119.99893 * 98.58759 * 4 3 2 14 14 O 1.21585 * 120.00099 * 186.30036 * 13 4 3 15 15 C 1.47729 * 119.99593 * 6.29995 * 13 4 3 16 16 C 1.39645 * 120.54295 * 316.28198 * 15 13 4 17 17 N 1.31641 * 120.67877 * 179.97438 * 16 15 13 18 18 C 1.31913 * 121.95106 * 359.97438 * 17 16 15 19 19 C 1.38821 * 121.01731 * 0.02562 * 18 17 16 20 20 O 1.35922 * 120.40539 * 179.97438 * 19 18 17 21 21 C 1.42894 * 117.00428 * 175.73612 * 20 19 18 22 22 C 1.53000 * 109.47333 * 156.13995 * 21 20 19 23 23 C 1.53006 * 109.47223 * 276.13962 * 21 20 19 24 24 C 1.38862 * 119.19734 * 359.97438 * 19 18 17 25 25 H 1.08998 * 109.47679 * 300.00552 * 1 2 3 26 26 H 1.09004 * 109.46587 * 60.00368 * 1 2 3 27 27 H 1.08995 * 109.47243 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47679 * 239.99448 * 2 1 3 29 29 H 1.09007 * 109.47068 * 119.99477 * 2 1 3 30 30 H 1.08998 * 109.46886 * 59.99565 * 3 2 1 31 31 H 1.08995 * 109.46854 * 299.99291 * 3 2 1 32 32 H 0.96996 * 119.99637 * 184.98321 * 8 7 5 33 33 H 1.07998 * 119.65725 * 359.97438 * 16 15 13 34 34 H 1.07998 * 119.49147 * 180.02562 * 18 17 16 35 35 H 1.09003 * 109.47140 * 36.13773 * 21 20 19 36 36 H 1.08994 * 109.46956 * 59.99649 * 22 21 20 37 37 H 1.09003 * 109.47214 * 180.02562 * 22 21 20 38 38 H 1.09004 * 109.46553 * 299.99904 * 22 21 20 39 39 H 1.08994 * 109.47229 * 179.97438 * 23 21 20 40 40 H 1.09003 * 109.46908 * 299.99953 * 23 21 20 41 41 H 1.08997 * 109.46887 * 59.99796 * 23 21 20 42 42 H 1.08007 * 120.88574 * 179.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1889 1.2657 1.1730 6 1 3.9678 0.4180 1.8045 7 6 5.1684 2.1775 1.5508 8 7 4.9754 3.4635 1.3647 9 14 6.7585 1.5737 2.3229 10 1 7.4571 0.6692 1.3747 11 1 7.6303 2.7352 2.6332 12 1 6.4521 0.8368 3.5753 13 6 4.1794 1.6166 -1.1533 14 8 5.3897 1.5028 -1.1732 15 6 3.4478 1.9457 -2.3939 16 6 2.2668 1.2758 -2.7202 17 7 1.6125 1.5673 -3.8247 18 6 2.0359 2.4935 -4.6631 19 6 3.2008 3.2060 -4.4132 20 8 3.6259 4.1574 -5.2859 21 6 4.7811 4.9109 -4.9123 22 6 5.4546 5.4683 -6.1680 23 6 4.3633 6.0673 -4.0017 24 6 3.9266 2.9349 -3.2609 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 5.6861 4.0939 1.5608 33 1 1.8864 0.5108 -2.0597 34 1 1.4675 2.7007 -5.5577 35 1 5.4803 4.2648 -4.3814 36 1 4.7555 6.1143 -6.6989 37 1 6.3361 6.0426 -5.8830 38 1 5.7523 4.6443 -6.8166 39 1 5.2445 6.6418 -3.7164 40 1 3.6641 6.7134 -4.5327 41 1 3.8835 5.6702 -3.1072 42 1 4.8369 3.4725 -3.0397 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359976890.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:45 Heat of formation + Delta-G solvation = -28.225215 kcal Electronic energy + Delta-G solvation = -24221.170196 eV Core-core repulsion = 20781.364387 eV Total energy + Delta-G solvation = -3439.805809 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 3.11 seconds Orbital eigenvalues (eV) -40.61653 -38.94416 -37.68626 -35.31438 -33.35747 -33.01786 -31.85940 -31.20485 -29.88074 -27.36389 -26.00852 -25.23495 -23.78954 -23.08209 -21.13414 -20.95383 -19.90138 -18.12863 -16.95945 -16.60391 -16.41228 -15.71706 -15.44266 -14.94107 -14.64844 -14.34107 -13.90053 -13.74129 -13.57397 -13.18320 -13.10961 -12.81652 -12.52228 -12.34911 -12.24037 -12.09318 -11.85191 -11.75271 -11.47678 -11.19554 -11.10478 -11.04185 -10.76525 -10.67796 -10.58972 -10.27392 -10.15625 -9.58830 -9.29691 -8.58804 -8.39663 -8.09007 -7.41958 -6.40799 -4.04878 1.22927 1.51988 3.15136 3.26907 3.36535 3.50301 3.76761 4.09735 4.36966 4.59576 4.69653 4.82575 4.86506 4.91833 5.00870 5.05409 5.25258 5.35410 5.39083 5.44678 5.46693 5.55817 5.63026 5.67000 5.72597 5.84149 5.94271 5.94885 6.04349 6.12873 6.21503 6.27567 6.31933 6.39574 6.48412 6.64575 6.67763 6.88805 7.38770 7.50767 8.14461 8.17637 8.84360 8.94181 9.39491 10.01307 10.58964 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.012764 B = 0.006289 C = 0.004569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.190588 B = 4451.027301 C = 6126.965567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.143 4.143 3 C 0.086 3.914 4 N -0.427 5.427 5 C -0.368 4.368 6 H 0.083 0.917 7 C 0.099 3.901 8 N -0.820 5.820 9 Si 0.892 3.108 10 H -0.267 1.267 11 H -0.289 1.289 12 H -0.275 1.275 13 C 0.515 3.485 14 O -0.555 6.555 15 C -0.106 4.106 16 C 0.064 3.936 17 N -0.452 5.452 18 C 0.067 3.933 19 C 0.074 3.926 20 O -0.306 6.306 21 C 0.071 3.929 22 C -0.145 4.145 23 C -0.179 4.179 24 C -0.126 4.126 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.268 0.732 33 H 0.175 0.825 34 H 0.159 0.841 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.000 2.618 -10.043 11.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.181 4.181 3 C -0.037 4.037 4 N -0.146 5.146 5 C -0.493 4.493 6 H 0.100 0.900 7 C -0.115 4.115 8 N -0.451 5.451 9 Si 0.717 3.283 10 H -0.191 1.191 11 H -0.215 1.215 12 H -0.200 1.200 13 C 0.302 3.698 14 O -0.436 6.436 15 C -0.111 4.111 16 C -0.093 4.093 17 N -0.160 5.160 18 C -0.091 4.091 19 C 0.026 3.974 20 O -0.220 6.220 21 C 0.015 3.985 22 C -0.202 4.202 23 C -0.236 4.236 24 C -0.153 4.153 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.192 0.808 34 H 0.176 0.824 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.198 2.404 -10.310 11.794 hybrid contribution 1.735 0.478 0.756 1.952 sum -3.463 2.882 -9.555 10.564 Atomic orbital electron populations 1.21734 0.95913 1.01238 1.01836 1.22015 0.95207 0.98598 1.02256 1.22027 0.84581 0.95250 1.01869 1.43127 1.03008 1.63075 1.05396 1.18650 1.21436 1.09268 0.99955 0.89975 1.25258 0.99301 0.93263 0.93677 1.70233 1.31589 1.01665 1.41599 0.86628 0.83604 0.79161 0.78929 1.19147 1.21458 1.20048 1.17974 0.87362 0.82211 0.82216 1.90621 1.13658 1.54323 1.85012 1.21404 0.96010 0.96224 0.97490 1.23634 0.91632 1.00011 0.94061 1.67702 1.31511 1.13759 1.03070 1.22162 0.93007 0.93904 1.00011 1.19998 0.95500 0.91427 0.90447 1.86092 1.45865 1.46566 1.43440 1.22508 0.86422 0.92468 0.97144 1.21822 1.00315 1.01532 0.96516 1.22344 1.02694 0.98429 1.00149 1.21787 1.00641 0.99173 0.93678 0.92674 0.92713 0.93007 0.92185 0.90988 0.91027 0.92007 0.92202 0.80804 0.82357 0.90524 0.91526 0.90494 0.91689 0.90877 0.91535 0.91623 0.83869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 37.16 0.37 -1.60 16 2 C -0.14 -2.35 5.38 -26.73 -0.14 -2.50 16 3 C 0.09 1.72 4.85 -4.04 -0.02 1.70 16 4 N -0.43 -10.55 2.51 -115.93 -0.29 -10.84 16 5 C -0.37 -9.95 8.72 -15.00 -0.13 -10.09 16 6 H 0.08 2.16 8.06 -52.49 -0.42 1.74 16 7 C 0.10 2.72 4.10 -17.45 -0.07 2.65 16 8 N -0.82 -23.18 13.87 55.50 0.77 -22.41 16 9 Si 0.89 21.75 29.69 -169.99 -5.05 16.70 16 10 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 C 0.52 13.05 7.05 -12.38 -0.09 12.96 16 14 O -0.55 -16.04 16.17 5.29 0.09 -15.95 16 15 C -0.11 -2.23 5.17 -104.84 -0.54 -2.77 16 16 C 0.06 1.18 8.56 -17.11 -0.15 1.04 16 17 N -0.45 -7.75 10.34 -12.77 -0.13 -7.88 16 18 C 0.07 1.06 11.13 -17.30 -0.19 0.87 16 19 C 0.07 1.22 6.56 -39.13 -0.26 0.96 16 20 O -0.31 -4.49 9.82 -19.50 -0.19 -4.68 16 21 C 0.07 0.90 2.87 -26.73 -0.08 0.83 16 22 C -0.14 -1.40 9.56 37.16 0.36 -1.04 16 23 C -0.18 -2.20 9.32 37.16 0.35 -1.85 16 24 C -0.13 -2.41 8.19 -38.70 -0.32 -2.73 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.98 6.13 -51.93 -0.32 0.66 16 29 H 0.07 1.25 8.14 -51.92 -0.42 0.82 16 30 H 0.07 1.47 8.11 -51.93 -0.42 1.05 16 31 H 0.06 1.18 4.88 -51.93 -0.25 0.93 16 32 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.18 3.03 3.53 -52.49 -0.19 2.84 16 34 H 0.16 2.00 8.06 -52.49 -0.42 1.58 16 35 H 0.08 1.06 5.95 -51.93 -0.31 0.75 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.96 7.52 -51.93 -0.39 0.56 16 42 H 0.14 2.78 5.92 -52.48 -0.31 2.47 16 LS Contribution 344.83 15.07 5.20 5.20 Total: -1.00 -31.60 344.83 -6.50 -38.10 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -5.97 Total: 3.34 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -0.91 Total: -1.57 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.35 Total: -41.13 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.11 Total: -20.63 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.05 Total: 16.70 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.60 -6.50 -38.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359976890.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.871 kcal (2) G-P(sol) polarization free energy of solvation -31.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.11 seconds