Wall clock time and date at job start Tue Mar 31 2020 07:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47130 * 2 1 4 4 N 1.46498 * 109.47008 * 179.97438 * 3 2 1 5 5 C 1.36875 * 120.00517 * 278.58688 * 4 3 2 6 6 H 1.07992 * 119.99878 * 52.69628 * 5 4 3 7 7 C 1.39045 * 120.00036 * 232.70147 * 5 4 3 8 8 N 1.31370 * 120.00131 * 40.39747 * 7 5 4 9 9 Si 1.86797 * 119.99908 * 220.39594 * 7 5 4 10 10 H 1.48495 * 109.47411 * 60.00123 * 9 7 5 11 11 H 1.48504 * 109.46917 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47306 * 299.99979 * 9 7 5 13 13 C 1.34786 * 119.99893 * 98.58759 * 4 3 2 14 14 O 1.21585 * 120.00099 * 186.30036 * 13 4 3 15 15 C 1.47729 * 119.99593 * 6.29995 * 13 4 3 16 16 C 1.39645 * 120.54295 * 316.28198 * 15 13 4 17 17 N 1.31641 * 120.67877 * 179.97438 * 16 15 13 18 18 C 1.31913 * 121.95106 * 359.97438 * 17 16 15 19 19 C 1.38821 * 121.01731 * 0.02562 * 18 17 16 20 20 O 1.35922 * 120.40539 * 179.97438 * 19 18 17 21 21 C 1.42894 * 117.00428 * 175.73612 * 20 19 18 22 22 C 1.53000 * 109.47333 * 156.13995 * 21 20 19 23 23 C 1.53006 * 109.47223 * 276.13962 * 21 20 19 24 24 C 1.38862 * 119.19734 * 359.97438 * 19 18 17 25 25 H 1.08998 * 109.47679 * 300.00552 * 1 2 3 26 26 H 1.09004 * 109.46587 * 60.00368 * 1 2 3 27 27 H 1.08995 * 109.47243 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47679 * 239.99448 * 2 1 3 29 29 H 1.09007 * 109.47068 * 119.99477 * 2 1 3 30 30 H 1.08998 * 109.46886 * 59.99565 * 3 2 1 31 31 H 1.08995 * 109.46854 * 299.99291 * 3 2 1 32 32 H 0.96996 * 119.99637 * 184.98321 * 8 7 5 33 33 H 1.07998 * 119.65725 * 359.97438 * 16 15 13 34 34 H 1.07998 * 119.49147 * 180.02562 * 18 17 16 35 35 H 1.09003 * 109.47140 * 36.13773 * 21 20 19 36 36 H 1.08994 * 109.46956 * 59.99649 * 22 21 20 37 37 H 1.09003 * 109.47214 * 180.02562 * 22 21 20 38 38 H 1.09004 * 109.46553 * 299.99904 * 22 21 20 39 39 H 1.08994 * 109.47229 * 179.97438 * 23 21 20 40 40 H 1.09003 * 109.46908 * 299.99953 * 23 21 20 41 41 H 1.08997 * 109.46887 * 59.99796 * 23 21 20 42 42 H 1.08007 * 120.88574 * 179.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1889 1.2657 1.1730 6 1 3.9678 0.4180 1.8045 7 6 5.1684 2.1775 1.5508 8 7 4.9754 3.4635 1.3647 9 14 6.7585 1.5737 2.3229 10 1 7.4571 0.6692 1.3747 11 1 7.6303 2.7352 2.6332 12 1 6.4521 0.8368 3.5753 13 6 4.1794 1.6166 -1.1533 14 8 5.3897 1.5028 -1.1732 15 6 3.4478 1.9457 -2.3939 16 6 2.2668 1.2758 -2.7202 17 7 1.6125 1.5673 -3.8247 18 6 2.0359 2.4935 -4.6631 19 6 3.2008 3.2060 -4.4132 20 8 3.6259 4.1574 -5.2859 21 6 4.7811 4.9109 -4.9123 22 6 5.4546 5.4683 -6.1680 23 6 4.3633 6.0673 -4.0017 24 6 3.9266 2.9349 -3.2609 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 5.6861 4.0939 1.5608 33 1 1.8864 0.5108 -2.0597 34 1 1.4675 2.7007 -5.5577 35 1 5.4803 4.2648 -4.3814 36 1 4.7555 6.1143 -6.6989 37 1 6.3361 6.0426 -5.8830 38 1 5.7523 4.6443 -6.8166 39 1 5.2445 6.6418 -3.7164 40 1 3.6641 6.7134 -4.5327 41 1 3.8835 5.6702 -3.1072 42 1 4.8369 3.4725 -3.0397 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359976890.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:44 Heat of formation + Delta-G solvation = -47.778814 kcal Electronic energy + Delta-G solvation = -24222.018104 eV Core-core repulsion = 20781.364387 eV Total energy + Delta-G solvation = -3440.653716 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.03760 -40.49542 -39.19554 -37.09708 -34.95611 -34.31725 -33.40328 -32.92349 -31.27375 -28.25695 -27.74826 -26.83901 -25.23322 -24.61850 -22.55460 -22.09293 -21.65593 -19.66356 -18.53969 -18.13682 -17.87860 -17.37848 -16.86799 -16.66919 -16.18526 -15.79783 -15.49077 -15.20566 -14.97766 -14.72090 -14.49651 -13.99060 -13.91720 -13.70485 -13.50701 -13.35970 -13.16367 -13.13036 -12.97957 -12.87956 -12.72933 -12.44512 -12.26595 -12.09066 -12.01280 -11.75688 -11.54735 -11.17175 -10.82506 -10.61817 -10.27467 -9.45515 -9.41432 -8.47639 -6.16006 -0.24868 0.09515 1.29202 1.39648 1.50535 1.92229 2.03406 2.28732 2.64373 2.87027 3.01573 3.43481 3.51166 3.69260 3.73576 3.87591 3.88239 3.99023 4.07727 4.08999 4.28070 4.42570 4.52733 4.60976 4.66818 4.69202 4.77122 4.81599 4.82973 4.88119 4.97517 5.09126 5.12374 5.21034 5.22162 5.30096 5.31206 5.41347 5.54731 6.09784 6.12110 6.76724 6.84139 6.94517 7.39667 8.03058 8.50944 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.012764 B = 0.006289 C = 0.004569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.190588 B = 4451.027301 C = 6126.965567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.134 4.134 3 C 0.088 3.912 4 N -0.438 5.438 5 C -0.386 4.386 6 H 0.083 0.917 7 C 0.058 3.942 8 N -0.852 5.852 9 Si 0.942 3.058 10 H -0.289 1.289 11 H -0.281 1.281 12 H -0.251 1.251 13 C 0.507 3.493 14 O -0.606 6.606 15 C -0.135 4.135 16 C 0.070 3.930 17 N -0.448 5.448 18 C 0.085 3.915 19 C 0.083 3.917 20 O -0.300 6.300 21 C 0.063 3.937 22 C -0.138 4.138 23 C -0.175 4.175 24 C -0.136 4.136 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.269 0.731 33 H 0.184 0.816 34 H 0.201 0.799 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.034 0.966 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.558 2.810 -11.808 13.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.172 4.172 3 C -0.035 4.035 4 N -0.156 5.156 5 C -0.511 4.511 6 H 0.100 0.900 7 C -0.152 4.152 8 N -0.484 5.484 9 Si 0.766 3.234 10 H -0.215 1.215 11 H -0.207 1.207 12 H -0.175 1.175 13 C 0.296 3.704 14 O -0.491 6.491 15 C -0.140 4.140 16 C -0.086 4.086 17 N -0.157 5.157 18 C -0.074 4.074 19 C 0.035 3.965 20 O -0.213 6.213 21 C 0.007 3.993 22 C -0.195 4.195 23 C -0.233 4.233 24 C -0.163 4.163 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.200 0.800 34 H 0.217 0.783 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.054 0.946 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.793 2.590 -12.042 14.066 hybrid contribution 2.176 0.468 1.169 2.514 sum -4.617 3.058 -10.872 12.201 Atomic orbital electron populations 1.21683 0.92787 1.02901 1.02507 1.21921 0.97756 0.95714 1.01798 1.22157 0.81711 0.97785 1.01814 1.43336 1.04938 1.62577 1.04764 1.18887 1.22469 1.09216 1.00565 0.89980 1.25951 1.01396 0.93406 0.94473 1.70258 1.32210 1.02387 1.43572 0.85834 0.80402 0.78616 0.78575 1.21550 1.20651 1.17537 1.18597 0.87101 0.81103 0.83620 1.90558 1.15914 1.56467 1.86190 1.21093 0.97616 0.98738 0.96549 1.23639 0.90580 0.99713 0.94698 1.67821 1.31033 1.14153 1.02648 1.22854 0.92244 0.91993 1.00336 1.20028 0.95299 0.91659 0.89517 1.86111 1.46481 1.45995 1.42677 1.22770 0.85572 0.92090 0.98896 1.21837 1.00926 1.01871 0.94879 1.22328 1.03510 0.98495 0.98936 1.21762 1.00732 0.99110 0.94716 0.92242 0.91829 0.90845 0.91965 0.92138 0.92059 0.90981 0.92159 0.80008 0.78254 0.92341 0.90197 0.88726 0.91457 0.89449 0.89885 0.94628 0.85294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 9.91 71.98 0.71 -2.67 16 2 C -0.13 -4.32 5.38 30.59 0.16 -4.15 16 3 C 0.09 3.54 4.85 86.38 0.42 3.96 16 4 N -0.44 -22.33 2.51 -638.95 -1.61 -23.93 16 5 C -0.39 -21.52 8.72 84.10 0.73 -20.78 16 6 H 0.08 4.44 8.06 -2.91 -0.02 4.42 16 7 C 0.06 3.30 4.10 84.96 0.35 3.64 16 8 N -0.85 -49.77 13.87 21.68 0.30 -49.47 16 9 Si 0.94 45.80 29.69 68.60 2.04 47.83 16 10 H -0.29 -15.03 7.11 99.48 0.71 -14.33 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.25 -11.15 7.11 99.48 0.71 -10.44 16 13 C 0.51 26.71 7.05 86.75 0.61 27.32 16 14 O -0.61 -36.85 16.17 -3.98 -0.06 -36.92 16 15 C -0.13 -5.78 5.17 -20.01 -0.10 -5.88 16 16 C 0.07 2.53 8.56 85.06 0.73 3.26 16 17 N -0.45 -14.23 10.34 -194.33 -2.01 -16.24 16 18 C 0.08 2.40 11.13 84.82 0.94 3.34 16 19 C 0.08 2.62 6.56 22.56 0.15 2.77 16 20 O -0.30 -8.19 9.82 -92.67 -0.91 -9.10 16 21 C 0.06 1.53 2.87 30.60 0.09 1.62 16 22 C -0.14 -2.34 9.56 71.98 0.69 -1.65 16 23 C -0.18 -4.16 9.32 71.98 0.67 -3.49 16 24 C -0.14 -5.31 8.19 22.84 0.19 -5.13 16 25 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 27 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.06 1.98 6.13 -2.39 -0.01 1.97 16 29 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 30 H 0.06 2.56 8.11 -2.39 -0.02 2.54 16 31 H 0.07 2.74 4.88 -2.39 -0.01 2.73 16 32 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 33 H 0.18 6.14 3.53 -2.91 -0.01 6.13 16 34 H 0.20 4.03 8.06 -2.91 -0.02 4.01 16 35 H 0.06 1.66 5.95 -2.39 -0.01 1.64 16 36 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 39 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.03 1.05 7.52 -2.39 -0.02 1.03 16 42 H 0.13 5.32 5.92 -2.91 -0.02 5.31 16 Total: -1.00 -70.86 344.83 5.11 -65.75 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 1.02 Total: 19.92 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: 6.34 Total: 2.15 kcal Atomic # 7 Polarization: -86.33 SS G_CDS: -3.31 Total: -89.64 kcal Atomic # 8 Polarization: -45.04 SS G_CDS: -0.97 Total: -46.01 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.04 Total: 47.83 kcal Total: -70.86 5.11 -65.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359976890.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.968 kcal (2) G-P(sol) polarization free energy of solvation -70.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds