Wall clock time and date at job start Tue Mar 31 2020 06:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46885 * 2 1 4 4 H 1.09005 * 109.46885 * 54.99843 * 3 2 1 5 5 C 1.52998 * 109.47206 * 295.00284 * 3 2 1 6 6 C 1.50695 * 109.47220 * 174.99950 * 3 2 1 7 7 C 1.41268 * 126.70466 * 84.98440 * 6 3 2 8 8 C 1.36816 * 103.84749 * 180.02562 * 7 6 3 9 9 C 1.47514 * 126.94437 * 179.97438 * 8 7 6 10 10 O 1.21586 * 119.99829 * 354.72227 * 9 8 7 11 11 N 1.34773 * 119.99973 * 174.72481 * 9 8 7 12 12 C 1.46508 * 119.99809 * 185.56309 * 11 9 8 13 13 C 1.52997 * 109.46794 * 185.19568 * 12 11 9 14 14 C 1.50696 * 115.55433 * 57.84276 * 13 12 11 15 15 H 1.07992 * 120.00333 * 264.63902 * 14 13 12 16 16 C 1.37882 * 119.99629 * 84.63684 * 14 13 12 17 17 N 1.31515 * 120.00034 * 1.97072 * 16 14 13 18 18 Si 1.86805 * 119.99909 * 181.97268 * 16 14 13 19 19 H 1.48503 * 109.46906 * 59.99803 * 18 16 14 20 20 H 1.48491 * 109.47094 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47002 * 299.99936 * 18 16 14 22 22 C 1.53008 * 117.49856 * 272.17127 * 13 12 11 23 23 C 1.53003 * 117.49771 * 203.51649 * 13 12 11 24 24 O 1.34644 * 106.11677 * 0.02562 * 8 7 6 25 25 N 1.20890 * 111.46513 * 359.97438 * 24 8 7 26 26 H 1.09000 * 109.47025 * 299.99667 * 1 2 3 27 27 H 1.08997 * 109.47533 * 60.00094 * 1 2 3 28 28 H 1.09000 * 109.47016 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47025 * 240.00333 * 2 1 3 30 30 H 1.08996 * 109.47026 * 119.99761 * 2 1 3 31 31 H 1.08998 * 109.46956 * 299.99969 * 5 3 2 32 32 H 1.09003 * 109.47480 * 59.99712 * 5 3 2 33 33 H 1.08998 * 109.47598 * 180.02562 * 5 3 2 34 34 H 1.07999 * 128.07480 * 0.02790 * 7 6 3 35 35 H 0.96996 * 120.00384 * 5.56456 * 11 9 8 36 36 H 1.08994 * 109.46934 * 305.19717 * 12 11 9 37 37 H 1.09003 * 109.46598 * 65.20178 * 12 11 9 38 38 H 0.97005 * 119.99685 * 185.02387 * 17 16 14 39 39 H 1.08994 * 117.49682 * 0.02562 * 22 13 12 40 40 H 1.09005 * 117.49419 * 145.02695 * 22 13 12 41 41 H 1.09003 * 117.49932 * 214.98663 * 23 13 12 42 42 H 1.08998 * 117.49691 * 359.97257 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6351 2.1266 -1.3073 6 6 3.5418 1.4444 0.1238 7 6 4.4759 1.3137 -0.9279 8 6 5.6889 1.3765 -0.2981 9 6 7.0202 1.2910 -0.9277 10 8 7.1165 1.0537 -2.1163 11 7 8.1298 1.4760 -0.1854 12 6 9.4448 1.5124 -0.8303 13 6 10.5350 1.6029 0.2394 14 6 10.5445 0.4884 1.2537 15 1 10.0420 0.6160 2.2010 16 6 11.1949 -0.6943 0.9721 17 7 11.8397 -0.8356 -0.1654 18 14 11.1602 -2.0961 2.2065 19 1 9.7542 -2.5084 2.4478 20 1 11.9281 -3.2479 1.6691 21 1 11.7703 -1.6463 3.4834 22 6 10.9399 2.9982 0.7192 23 6 11.8847 2.1921 -0.1755 24 8 5.4221 1.5310 1.0125 25 7 4.2317 1.5658 1.2205 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.0698 1.5876 -2.1491 32 1 0.5488 2.1252 -1.3969 33 1 1.9988 3.1541 -1.3076 34 1 4.2786 1.1925 -1.9827 35 1 8.0578 1.5849 0.7757 36 1 9.5866 0.6054 -1.4178 37 1 9.5046 2.3823 -1.4845 38 1 12.2352 -1.6909 -0.3957 39 1 10.4293 3.8516 0.2731 40 1 11.2136 3.1098 1.7684 41 1 12.7795 1.7737 0.2853 42 1 11.9961 2.5148 -1.2106 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431137719.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:36 Heat of formation + Delta-G solvation = 28.558776 kcal Electronic energy + Delta-G solvation = -23049.049316 eV Core-core repulsion = 19611.705846 eV Total energy + Delta-G solvation = -3437.343470 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.92283 -39.14939 -37.32128 -36.76091 -33.67778 -33.14512 -32.01367 -31.76319 -29.72963 -26.80373 -25.54208 -25.38512 -23.26267 -22.92561 -21.23807 -20.98952 -19.70187 -19.31524 -18.00210 -17.62761 -16.39575 -15.93730 -15.35567 -15.21664 -14.82421 -14.71118 -14.50363 -14.01701 -13.91327 -13.60050 -13.12990 -12.96343 -12.78405 -12.44120 -12.10159 -11.99997 -11.68971 -11.59493 -11.45306 -11.23011 -10.99390 -10.95497 -10.91132 -10.57205 -10.29826 -10.07386 -10.00944 -9.61438 -9.53991 -9.11554 -8.54763 -8.43919 -8.14829 -6.11021 -4.20536 0.97767 2.06258 2.83672 3.27238 3.32847 3.35012 3.35690 3.63335 3.88870 4.34382 4.43626 4.62774 4.81521 4.86089 5.07986 5.10925 5.17533 5.18565 5.24577 5.29846 5.36967 5.48804 5.61134 5.67090 5.69693 5.75770 5.93772 5.96082 6.02098 6.04466 6.25671 6.39448 6.43414 6.65358 6.73472 7.04356 7.06627 7.32214 7.46676 7.78455 7.91679 8.20367 8.28556 8.51120 8.81242 9.47608 10.96975 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020113 B = 0.003583 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.803827 B = 7813.567658 C = 8497.458129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.011 4.011 4 H 0.088 0.912 5 C -0.147 4.147 6 C 0.015 3.985 7 C -0.162 4.162 8 C -0.064 4.064 9 C 0.590 3.410 10 O -0.528 6.528 11 N -0.679 5.679 12 C 0.160 3.840 13 C 0.023 3.977 14 C -0.502 4.502 15 H 0.061 0.939 16 C 0.075 3.925 17 N -0.874 5.874 18 Si 0.889 3.111 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.211 4.211 23 C -0.142 4.142 24 O 0.117 5.883 25 N -0.350 5.350 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.179 0.821 35 H 0.409 0.591 36 H 0.078 0.922 37 H 0.043 0.957 38 H 0.263 0.737 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.847 4.651 -1.110 18.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.030 4.030 4 H 0.107 0.893 5 C -0.205 4.205 6 C -0.143 4.143 7 C -0.184 4.184 8 C -0.130 4.130 9 C 0.372 3.628 10 O -0.406 6.406 11 N -0.327 5.327 12 C 0.037 3.963 13 C 0.022 3.978 14 C -0.539 4.539 15 H 0.079 0.921 16 C -0.129 4.129 17 N -0.510 5.510 18 Si 0.717 3.283 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.248 4.248 23 C -0.180 4.180 24 O 0.046 5.954 25 N -0.051 5.051 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.197 0.803 35 H 0.244 0.756 36 H 0.096 0.904 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.870 4.540 -0.759 18.454 hybrid contribution 0.098 -0.943 0.270 0.986 sum -17.772 3.597 -0.489 18.139 Atomic orbital electron populations 1.21815 0.95100 1.01952 1.02043 1.21574 0.96179 0.94894 1.02904 1.19571 0.85536 0.97802 1.00123 0.89341 1.21895 1.01833 1.00699 0.96070 1.23558 0.98660 1.03497 0.88574 1.22721 0.89500 1.04261 1.01958 1.24582 0.97787 1.06655 0.84018 1.16602 0.81206 0.78951 0.86058 1.90833 1.85401 1.50020 1.14355 1.45919 1.06206 1.68848 1.11727 1.21144 0.79629 1.00591 0.94893 1.19014 0.92059 0.90884 0.95819 1.20321 1.34571 0.98072 1.00965 0.92095 1.24972 0.93943 0.98513 0.95489 1.69975 1.34146 1.24456 1.22447 0.86706 0.78271 0.81774 0.81580 1.20159 1.21245 1.20127 1.23068 1.07079 0.95511 0.99182 1.22477 0.95780 1.02866 0.96884 1.85005 1.19225 1.66241 1.24973 1.73717 0.89443 1.17727 1.24197 0.92608 0.92216 0.92458 0.91278 0.91634 0.91845 0.91323 0.92187 0.80343 0.75586 0.90365 0.93912 0.92763 0.91583 0.90244 0.89500 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.67 37.16 0.36 -0.65 16 2 C -0.12 -1.02 5.38 -26.73 -0.14 -1.16 16 3 C -0.01 -0.10 2.85 -91.78 -0.26 -0.37 16 4 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 5 C -0.15 -1.12 8.56 37.16 0.32 -0.80 16 6 C 0.02 0.20 6.20 -82.16 -0.51 -0.31 16 7 C -0.16 -2.22 10.13 -38.95 -0.39 -2.61 16 8 C -0.06 -1.03 7.29 -36.32 -0.26 -1.29 16 9 C 0.59 11.04 7.81 -12.48 -0.10 10.94 16 10 O -0.53 -11.23 16.89 5.29 0.09 -11.14 16 11 N -0.68 -13.06 5.37 -61.36 -0.33 -13.39 16 12 C 0.16 3.45 5.57 -4.04 -0.02 3.43 16 13 C 0.02 0.52 1.51 -155.66 -0.23 0.29 16 14 C -0.50 -12.69 8.38 -34.44 -0.29 -12.98 16 15 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 16 C 0.08 1.97 5.43 -17.82 -0.10 1.87 16 17 N -0.87 -23.87 12.73 55.43 0.71 -23.16 16 18 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 C -0.21 -4.26 9.94 -26.69 -0.27 -4.53 16 23 C -0.14 -3.15 9.26 -26.69 -0.25 -3.39 16 24 O 0.12 1.86 11.05 15.54 0.17 2.03 16 25 N -0.35 -5.29 12.04 33.52 0.40 -4.89 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.34 6.56 -51.93 -0.34 0.00 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.47 7.48 -51.93 -0.39 0.08 16 32 H 0.07 0.41 6.57 -51.93 -0.34 0.07 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.18 2.12 7.65 -52.49 -0.40 1.72 16 35 H 0.41 7.40 8.08 -40.82 -0.33 7.07 16 36 H 0.08 1.93 8.09 -51.93 -0.42 1.51 16 37 H 0.04 0.87 8.11 -51.93 -0.42 0.45 16 38 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 41 H 0.09 2.08 8.14 -51.93 -0.42 1.65 16 42 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 357.03 15.07 5.38 5.38 Total: -1.00 -28.32 357.03 -7.17 -35.48 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -6.42 Total: 5.75 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -2.15 Total: -11.56 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 0.78 Total: -41.44 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.26 Total: -9.10 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.32 -7.17 -35.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431137719.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.044 kcal (2) G-P(sol) polarization free energy of solvation -28.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds