Wall clock time and date at job start Tue Mar 31 2020 06:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46885 * 2 1 4 4 H 1.09005 * 109.46885 * 54.99843 * 3 2 1 5 5 C 1.52998 * 109.47206 * 295.00284 * 3 2 1 6 6 C 1.50695 * 109.47220 * 174.99950 * 3 2 1 7 7 C 1.41268 * 126.70466 * 84.98440 * 6 3 2 8 8 C 1.36816 * 103.84749 * 180.02562 * 7 6 3 9 9 C 1.47514 * 126.94437 * 179.97438 * 8 7 6 10 10 O 1.21586 * 119.99829 * 354.72227 * 9 8 7 11 11 N 1.34773 * 119.99973 * 174.72481 * 9 8 7 12 12 C 1.46508 * 119.99809 * 185.56309 * 11 9 8 13 13 C 1.52997 * 109.46794 * 185.19568 * 12 11 9 14 14 C 1.50696 * 115.55433 * 57.84276 * 13 12 11 15 15 H 1.07992 * 120.00333 * 264.63902 * 14 13 12 16 16 C 1.37882 * 119.99629 * 84.63684 * 14 13 12 17 17 N 1.31515 * 120.00034 * 1.97072 * 16 14 13 18 18 Si 1.86805 * 119.99909 * 181.97268 * 16 14 13 19 19 H 1.48503 * 109.46906 * 59.99803 * 18 16 14 20 20 H 1.48491 * 109.47094 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47002 * 299.99936 * 18 16 14 22 22 C 1.53008 * 117.49856 * 272.17127 * 13 12 11 23 23 C 1.53003 * 117.49771 * 203.51649 * 13 12 11 24 24 O 1.34644 * 106.11677 * 0.02562 * 8 7 6 25 25 N 1.20890 * 111.46513 * 359.97438 * 24 8 7 26 26 H 1.09000 * 109.47025 * 299.99667 * 1 2 3 27 27 H 1.08997 * 109.47533 * 60.00094 * 1 2 3 28 28 H 1.09000 * 109.47016 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47025 * 240.00333 * 2 1 3 30 30 H 1.08996 * 109.47026 * 119.99761 * 2 1 3 31 31 H 1.08998 * 109.46956 * 299.99969 * 5 3 2 32 32 H 1.09003 * 109.47480 * 59.99712 * 5 3 2 33 33 H 1.08998 * 109.47598 * 180.02562 * 5 3 2 34 34 H 1.07999 * 128.07480 * 0.02790 * 7 6 3 35 35 H 0.96996 * 120.00384 * 5.56456 * 11 9 8 36 36 H 1.08994 * 109.46934 * 305.19717 * 12 11 9 37 37 H 1.09003 * 109.46598 * 65.20178 * 12 11 9 38 38 H 0.97005 * 119.99685 * 185.02387 * 17 16 14 39 39 H 1.08994 * 117.49682 * 0.02562 * 22 13 12 40 40 H 1.09005 * 117.49419 * 145.02695 * 22 13 12 41 41 H 1.09003 * 117.49932 * 214.98663 * 23 13 12 42 42 H 1.08998 * 117.49691 * 359.97257 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6351 2.1266 -1.3073 6 6 3.5418 1.4444 0.1238 7 6 4.4759 1.3137 -0.9279 8 6 5.6889 1.3765 -0.2981 9 6 7.0202 1.2910 -0.9277 10 8 7.1165 1.0537 -2.1163 11 7 8.1298 1.4760 -0.1854 12 6 9.4448 1.5124 -0.8303 13 6 10.5350 1.6029 0.2394 14 6 10.5445 0.4884 1.2537 15 1 10.0420 0.6160 2.2010 16 6 11.1949 -0.6943 0.9721 17 7 11.8397 -0.8356 -0.1654 18 14 11.1602 -2.0961 2.2065 19 1 9.7542 -2.5084 2.4478 20 1 11.9281 -3.2479 1.6691 21 1 11.7703 -1.6463 3.4834 22 6 10.9399 2.9982 0.7192 23 6 11.8847 2.1921 -0.1755 24 8 5.4221 1.5310 1.0125 25 7 4.2317 1.5658 1.2205 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.0698 1.5876 -2.1491 32 1 0.5488 2.1252 -1.3969 33 1 1.9988 3.1541 -1.3076 34 1 4.2786 1.1925 -1.9827 35 1 8.0578 1.5849 0.7757 36 1 9.5866 0.6054 -1.4178 37 1 9.5046 2.3823 -1.4845 38 1 12.2352 -1.6909 -0.3957 39 1 10.4293 3.8516 0.2731 40 1 11.2136 3.1098 1.7684 41 1 12.7795 1.7737 0.2853 42 1 11.9961 2.5148 -1.2106 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431137719.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:35 Heat of formation + Delta-G solvation = 12.927142 kcal Electronic energy + Delta-G solvation = -23049.727155 eV Core-core repulsion = 19611.705846 eV Total energy + Delta-G solvation = -3438.021309 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -46.07209 -40.71538 -38.50972 -38.10958 -35.21675 -34.20740 -33.97294 -32.99342 -30.37886 -28.46190 -27.32028 -26.26066 -24.55549 -23.98273 -22.90615 -22.00035 -21.36679 -20.63446 -19.34058 -18.80329 -18.08942 -17.22585 -16.92868 -16.63667 -16.19087 -15.93165 -15.90422 -15.34307 -14.88220 -14.70835 -14.60189 -14.39560 -13.79954 -13.65682 -13.48840 -13.01154 -12.92101 -12.87653 -12.81244 -12.50769 -12.40574 -12.18143 -12.00902 -11.95399 -11.62376 -11.57032 -11.31617 -11.06707 -10.97499 -10.84393 -10.41859 -10.16883 -9.88138 -8.10818 -6.23612 -0.29038 0.98562 1.42572 1.44232 1.49937 1.53377 1.91269 2.24809 2.42763 2.92545 3.18142 3.37629 3.54746 3.88484 3.88812 3.98991 4.08272 4.15425 4.24415 4.46373 4.53489 4.56455 4.61778 4.66481 4.69380 4.75215 4.86374 4.96283 5.03293 5.04481 5.09034 5.13595 5.18573 5.30718 5.38067 5.39880 5.49131 5.57229 5.69603 5.77340 6.36168 6.42242 6.83681 6.95167 7.03372 7.46435 8.96550 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020113 B = 0.003583 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.803827 B = 7813.567658 C = 8497.458129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.011 4.011 4 H 0.093 0.907 5 C -0.145 4.145 6 C 0.027 3.973 7 C -0.145 4.145 8 C -0.083 4.083 9 C 0.595 3.405 10 O -0.557 6.557 11 N -0.679 5.679 12 C 0.174 3.826 13 C -0.001 4.001 14 C -0.506 4.506 15 H 0.061 0.939 16 C 0.029 3.971 17 N -0.904 5.904 18 Si 0.943 3.057 19 H -0.275 1.275 20 H -0.290 1.290 21 H -0.270 1.270 22 C -0.180 4.180 23 C -0.151 4.151 24 O 0.103 5.897 25 N -0.365 5.365 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.057 0.943 34 H 0.199 0.801 35 H 0.414 0.586 36 H 0.040 0.960 37 H 0.055 0.945 38 H 0.259 0.741 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.122 5.412 -0.864 20.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.031 4.031 4 H 0.111 0.889 5 C -0.203 4.203 6 C -0.132 4.132 7 C -0.167 4.167 8 C -0.149 4.149 9 C 0.379 3.621 10 O -0.437 6.437 11 N -0.327 5.327 12 C 0.051 3.949 13 C -0.001 4.001 14 C -0.544 4.544 15 H 0.079 0.921 16 C -0.172 4.172 17 N -0.541 5.541 18 Si 0.769 3.231 19 H -0.201 1.201 20 H -0.215 1.215 21 H -0.195 1.195 22 C -0.217 4.217 23 C -0.189 4.189 24 O 0.034 5.966 25 N -0.068 5.068 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.076 0.924 34 H 0.216 0.784 35 H 0.251 0.749 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.081 0.919 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -20.138 5.312 -0.483 20.832 hybrid contribution 0.720 -1.152 0.205 1.374 sum -19.418 4.160 -0.278 19.860 Atomic orbital electron populations 1.21796 0.93288 1.02542 1.02895 1.21567 0.97725 0.94012 1.02130 1.19791 0.83029 0.98701 1.01555 0.88857 1.21916 1.03323 1.00238 0.94810 1.24134 1.00191 1.01356 0.87474 1.23060 0.88676 1.01997 1.02985 1.24142 0.97000 1.09071 0.84694 1.16772 0.81870 0.77793 0.85658 1.90810 1.86105 1.51219 1.15588 1.45814 1.05717 1.69182 1.11978 1.20789 0.80469 0.99249 0.94393 1.19055 0.92771 0.92041 0.96261 1.20641 1.33565 0.98803 1.01384 0.92098 1.25620 0.94092 1.00686 0.96812 1.70085 1.35425 1.24638 1.23987 0.85857 0.78027 0.79320 0.79895 1.20087 1.21534 1.19494 1.23062 1.04762 0.94741 0.99111 1.22402 0.94800 1.03870 0.97837 1.84997 1.19743 1.67134 1.24725 1.73718 0.89323 1.18605 1.25185 0.92266 0.90846 0.92068 0.91276 0.93252 0.91526 0.89152 0.92423 0.78435 0.74946 0.94119 0.92650 0.93193 0.88867 0.89920 0.91853 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.67 71.98 0.70 -0.88 16 2 C -0.12 -1.77 5.38 30.60 0.16 -1.60 16 3 C -0.01 -0.19 2.85 -11.54 -0.03 -0.22 16 4 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 5 C -0.15 -1.77 8.56 71.98 0.62 -1.15 16 6 C 0.03 0.65 6.20 43.55 0.27 0.92 16 7 C -0.15 -3.75 10.13 22.68 0.23 -3.52 16 8 C -0.08 -2.61 7.29 24.38 0.18 -2.44 16 9 C 0.60 22.26 7.81 86.69 0.68 22.94 16 10 O -0.56 -23.79 16.89 -3.99 -0.07 -23.85 16 11 N -0.68 -26.12 5.37 -466.29 -2.50 -28.63 16 12 C 0.17 7.58 5.57 86.38 0.48 8.06 16 13 C 0.00 -0.03 1.51 -52.93 -0.08 -0.11 16 14 C -0.51 -25.66 8.38 25.60 0.21 -25.45 16 15 H 0.06 3.01 7.81 -2.91 -0.02 2.99 16 16 C 0.03 1.53 5.43 84.66 0.46 1.99 16 17 N -0.90 -50.41 12.73 21.45 0.27 -50.13 16 18 Si 0.94 42.45 29.54 68.60 2.03 44.48 16 19 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 20 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 22 C -0.18 -6.95 9.94 30.62 0.30 -6.64 16 23 C -0.15 -6.66 9.26 30.62 0.28 -6.38 16 24 O 0.10 3.23 11.05 65.80 0.73 3.95 16 25 N -0.37 -10.66 12.04 -48.85 -0.59 -11.25 16 26 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.07 0.59 6.56 -2.39 -0.02 0.57 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 0.78 7.48 -2.39 -0.02 0.76 16 32 H 0.09 0.73 6.57 -2.39 -0.02 0.72 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.20 4.25 7.65 -2.91 -0.02 4.23 16 35 H 0.41 14.94 8.08 -92.71 -0.75 14.19 16 36 H 0.04 2.07 8.09 -2.39 -0.02 2.05 16 37 H 0.06 2.24 8.11 -2.39 -0.02 2.22 16 38 H 0.26 14.04 8.32 -92.70 -0.77 13.27 16 39 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 40 H 0.08 3.15 8.14 -2.38 -0.02 3.13 16 41 H 0.06 3.07 8.14 -2.39 -0.02 3.05 16 42 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -60.84 357.03 4.60 -56.24 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 0.27 Total: 23.67 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 4.46 Total: -14.48 kcal Atomic # 7 Polarization: -87.19 SS G_CDS: -2.82 Total: -90.01 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: 0.66 Total: -19.90 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -60.84 4.60 -56.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431137719.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.167 kcal (2) G-P(sol) polarization free energy of solvation -60.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds