Wall clock time and date at job start Tue Mar 31 2020 06:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47081 * 2 1 4 4 H 1.08996 * 109.46764 * 305.73589 * 3 2 1 5 5 C 1.50701 * 109.46697 * 185.74147 * 3 2 1 6 6 H 1.08009 * 119.99683 * 239.99738 * 5 3 2 7 7 C 1.37871 * 120.00449 * 60.00139 * 5 3 2 8 8 N 1.31512 * 119.99891 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00248 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46953 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47033 * 119.99603 * 9 7 5 12 12 H 1.48499 * 109.46985 * 239.99831 * 9 7 5 13 13 N 1.46904 * 109.47020 * 65.74048 * 3 2 1 14 14 C 1.46904 * 110.99664 * 259.14108 * 13 3 2 15 15 H 1.08999 * 109.46876 * 42.67763 * 14 13 3 16 16 C 1.52995 * 109.46944 * 282.67921 * 14 13 3 17 17 C 1.53000 * 109.46455 * 162.67877 * 14 13 3 18 18 C 1.50701 * 109.47147 * 294.36703 * 17 14 13 19 19 C 1.38252 * 119.99537 * 98.75585 * 18 17 14 20 20 C 1.38223 * 119.99655 * 179.78784 * 19 18 17 21 21 C 1.38257 * 119.99909 * 0.45880 * 20 19 18 22 22 C 1.38219 * 119.99956 * 359.77097 * 21 20 19 23 23 C 1.38211 * 120.00183 * 279.02623 * 18 17 14 24 24 N 1.48019 * 119.99972 * 359.97438 * 23 18 17 25 25 O 1.21805 * 120.00430 * 185.79049 * 24 23 18 26 26 O 1.21804 * 120.00018 * 5.78872 * 24 23 18 27 27 H 1.09001 * 109.46799 * 54.04675 * 1 2 3 28 28 H 1.09006 * 109.46613 * 294.04854 * 1 2 3 29 29 H 1.09000 * 109.46891 * 174.04990 * 1 2 3 30 30 H 1.09001 * 109.47224 * 120.00001 * 2 1 3 31 31 H 1.08996 * 109.46794 * 239.99804 * 2 1 3 32 32 H 0.97001 * 120.00113 * 180.02562 * 8 7 5 33 33 H 1.00900 * 110.99981 * 23.09831 * 13 3 2 34 34 H 1.08999 * 109.47450 * 60.00403 * 16 14 13 35 35 H 1.09010 * 109.46964 * 180.02562 * 16 14 13 36 36 H 1.08999 * 109.47205 * 299.99640 * 16 14 13 37 37 H 1.08994 * 109.47563 * 54.37397 * 17 14 13 38 38 H 1.09009 * 109.46524 * 174.36834 * 17 14 13 39 39 H 1.07991 * 120.00373 * 359.97438 * 19 18 17 40 40 H 1.07996 * 120.00065 * 180.25721 * 20 19 18 41 41 H 1.07995 * 120.00250 * 179.78962 * 21 20 19 42 42 H 1.07996 * 119.99774 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5952 1.9851 -0.8342 5 6 3.5403 1.4448 -0.1421 6 1 4.1551 1.8861 0.6285 7 6 4.1282 0.8837 -1.2559 8 7 3.3797 0.3460 -2.1941 9 14 5.9879 0.8872 -1.4324 10 1 6.5961 1.5470 -0.2492 11 1 6.4789 -0.5112 -1.5255 12 1 6.3669 1.6279 -2.6623 13 7 1.6667 2.0939 1.2627 14 6 0.4898 2.9544 1.0832 15 1 -0.2441 2.4413 0.4618 16 6 0.9107 4.2589 0.4035 17 6 -0.1267 3.2664 2.4484 18 6 -0.6661 1.9980 3.0577 19 6 0.0778 1.3135 4.0008 20 6 -0.4189 0.1525 4.5629 21 6 -1.6553 -0.3294 4.1750 22 6 -2.3969 0.3525 3.2286 23 6 -1.9019 1.5160 2.6695 24 7 -2.6959 2.2460 1.6558 25 8 -3.8275 1.8818 1.3905 26 8 -2.2177 3.2111 1.0869 27 1 -0.3633 0.6034 -0.8319 28 1 -0.3633 0.4188 0.9385 29 1 -0.3633 -1.0221 -0.1065 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 3.7933 -0.0491 -2.9775 33 1 1.5083 1.4112 1.9887 34 1 1.3499 4.0366 -0.5690 35 1 0.0374 4.8977 0.2708 36 1 1.6446 4.7720 1.0250 37 1 0.6354 3.6886 3.1033 38 1 -0.9379 3.9840 2.3252 39 1 1.0455 1.6875 4.3006 40 1 0.1603 -0.3800 5.3026 41 1 -2.0419 -1.2383 4.6116 42 1 -3.3625 -0.0241 2.9253 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449243525.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:40 Heat of formation + Delta-G solvation = 16.586207 kcal Electronic energy + Delta-G solvation = -24857.899490 eV Core-core repulsion = 21420.036851 eV Total energy + Delta-G solvation = -3437.862640 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.15919 -39.69359 -37.31617 -36.35280 -34.11285 -32.14880 -31.87293 -31.19855 -28.93843 -27.11259 -26.26398 -25.69006 -22.93101 -22.69641 -22.07064 -19.98232 -19.63465 -18.91189 -18.42721 -17.40482 -16.45794 -16.14386 -15.84891 -15.00877 -14.88674 -14.72634 -13.94640 -13.89245 -13.37324 -13.03410 -12.87791 -12.52582 -12.21716 -12.06125 -11.87002 -11.60215 -11.32338 -11.27267 -11.15959 -11.06554 -10.82829 -10.79044 -10.69523 -10.48229 -10.34293 -10.00050 -9.81611 -9.79193 -9.56925 -9.16858 -8.94802 -8.31369 -7.16160 -5.95177 -3.98331 -0.08169 0.85827 1.41339 1.54730 3.20783 3.32077 3.40191 3.44964 4.28704 4.32042 4.45752 4.57533 4.80280 4.85455 5.09136 5.18370 5.34154 5.45740 5.46990 5.59532 5.70984 5.88648 5.96497 6.01305 6.03238 6.08056 6.18920 6.23372 6.28855 6.35114 6.52534 6.59374 6.72642 6.76668 6.96360 6.97617 7.21714 7.42514 7.74458 7.81621 7.93358 8.33028 8.59197 8.63268 9.09827 9.66658 11.10879 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019401 B = 0.005115 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.892791 B = 5473.293549 C = 5776.236878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.144 4.144 3 C 0.218 3.782 4 H 0.032 0.968 5 C -0.488 4.488 6 H 0.063 0.937 7 C 0.053 3.947 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.681 5.681 14 C 0.096 3.904 15 H 0.042 0.958 16 C -0.132 4.132 17 C -0.100 4.100 18 C -0.004 4.004 19 C -0.117 4.117 20 C -0.064 4.064 21 C -0.129 4.129 22 C -0.056 4.056 23 C -0.044 4.044 24 N 0.032 4.968 25 O -0.183 6.183 26 O -0.142 6.142 27 H 0.043 0.957 28 H 0.027 0.973 29 H 0.033 0.967 30 H 0.031 0.969 31 H 0.101 0.899 32 H 0.258 0.742 33 H 0.317 0.683 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.054 0.946 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.151 0.849 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.951 0.234 13.772 16.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.183 4.183 3 C 0.111 3.889 4 H 0.050 0.950 5 C -0.527 4.527 6 H 0.081 0.919 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.723 3.277 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.312 5.312 14 C -0.014 4.014 15 H 0.060 0.940 16 C -0.189 4.189 17 C -0.137 4.137 18 C -0.005 4.005 19 C -0.136 4.136 20 C -0.082 4.082 21 C -0.148 4.148 22 C -0.076 4.076 23 C -0.127 4.127 24 N 0.549 4.451 25 O -0.392 6.392 26 O -0.360 6.360 27 H 0.063 0.937 28 H 0.046 0.954 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.119 0.881 32 H 0.068 0.932 33 H 0.134 0.866 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.103 0.897 38 H 0.117 0.883 39 H 0.168 0.832 40 H 0.159 0.841 41 H 0.161 0.839 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.145 0.309 13.990 16.716 hybrid contribution 0.013 -0.791 -0.572 0.976 sum -9.132 -0.482 13.418 16.238 Atomic orbital electron populations 1.21946 0.99942 0.99337 0.99332 1.22211 0.91080 1.02271 1.02769 1.19211 0.95429 0.88432 0.85853 0.95001 1.21259 0.91232 1.35716 1.04467 0.91908 1.24970 0.98023 0.95760 0.95953 1.69881 1.34543 1.39753 1.09589 0.86498 0.85890 0.77407 0.77930 1.19797 1.21346 1.21209 1.60969 1.33888 1.25684 1.10704 1.21404 0.91766 0.95886 0.92317 0.93996 1.21699 1.00168 0.95831 1.01243 1.21337 1.01473 0.92773 0.98154 1.20074 0.89979 0.97267 0.93227 1.21302 1.00503 0.95461 0.96314 1.21630 0.94841 0.94591 0.97123 1.21147 0.95056 1.00690 0.97858 1.21012 1.00754 0.91615 0.94178 1.20951 0.95134 0.98199 0.98438 1.43553 1.00778 1.00318 1.00452 1.94505 1.04099 1.71378 1.69235 1.94527 1.73535 1.17388 1.50580 0.93747 0.95366 0.94825 0.94986 0.88114 0.93188 0.86559 0.91926 0.93177 0.92662 0.89652 0.88270 0.83169 0.84095 0.83946 0.83391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 8.60 37.16 0.32 -2.75 16 2 C -0.14 -3.40 5.10 -26.73 -0.14 -3.53 16 3 C 0.22 5.36 1.90 -68.86 -0.13 5.23 16 4 H 0.03 0.88 6.70 -51.93 -0.35 0.53 16 5 C -0.49 -13.28 8.84 -34.44 -0.30 -13.59 16 6 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 7 C 0.05 1.46 5.29 -17.82 -0.09 1.36 16 8 N -0.90 -25.60 11.29 55.43 0.63 -24.97 16 9 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 N -0.68 -13.87 5.87 -100.95 -0.59 -14.46 16 14 C 0.10 1.74 1.27 -67.71 -0.09 1.65 16 15 H 0.04 0.84 4.64 -51.93 -0.24 0.60 16 16 C -0.13 -2.35 9.31 37.15 0.35 -2.00 16 17 C -0.10 -1.44 4.25 -27.88 -0.12 -1.56 16 18 C 0.00 -0.05 3.87 -104.63 -0.41 -0.46 16 19 C -0.12 -1.30 8.35 -39.58 -0.33 -1.63 16 20 C -0.06 -0.57 10.05 -39.58 -0.40 -0.97 16 21 C -0.13 -1.16 10.05 -39.58 -0.40 -1.56 16 22 C -0.06 -0.64 9.56 -39.58 -0.38 -1.02 16 23 C -0.04 -0.62 5.62 -79.95 -0.45 -1.07 16 24 N 0.03 0.53 4.45 33.96 0.15 0.68 16 25 O -0.18 -3.02 18.46 -29.46 -0.54 -3.57 16 26 O -0.14 -2.44 13.54 -29.46 -0.40 -2.84 16 27 H 0.04 0.97 7.97 -51.93 -0.41 0.55 16 28 H 0.03 0.53 4.82 -51.93 -0.25 0.28 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.03 0.73 8.02 -51.93 -0.42 0.32 16 31 H 0.10 2.70 5.94 -51.93 -0.31 2.39 16 32 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.32 6.02 5.78 -39.29 -0.23 5.79 16 34 H 0.06 1.27 7.14 -51.93 -0.37 0.90 16 35 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.08 1.12 8.02 -51.93 -0.42 0.70 16 38 H 0.10 1.42 6.00 -51.92 -0.31 1.10 16 39 H 0.15 1.47 8.04 -52.49 -0.42 1.05 16 40 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 41 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 42 H 0.15 1.50 7.62 -52.49 -0.40 1.10 16 LS Contribution 333.86 15.07 5.03 5.03 Total: -1.00 -30.18 333.86 -9.10 -39.27 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -5.78 Total: 6.36 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: -2.56 Total: -21.89 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.18 Total: -38.76 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.94 Total: -6.40 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.18 -9.10 -39.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449243525.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.857 kcal (2) G-P(sol) polarization free energy of solvation -30.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds