Wall clock time and date at job start Tue Mar 31 2020 06:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47081 * 2 1 4 4 H 1.08996 * 109.46764 * 305.73589 * 3 2 1 5 5 C 1.50701 * 109.46697 * 185.74147 * 3 2 1 6 6 H 1.08009 * 119.99683 * 239.99738 * 5 3 2 7 7 C 1.37871 * 120.00449 * 60.00139 * 5 3 2 8 8 N 1.31512 * 119.99891 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00248 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46953 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47033 * 119.99603 * 9 7 5 12 12 H 1.48499 * 109.46985 * 239.99831 * 9 7 5 13 13 N 1.46904 * 109.47020 * 65.74048 * 3 2 1 14 14 C 1.46904 * 110.99664 * 259.14108 * 13 3 2 15 15 H 1.08999 * 109.46876 * 42.67763 * 14 13 3 16 16 C 1.52995 * 109.46944 * 282.67921 * 14 13 3 17 17 C 1.53000 * 109.46455 * 162.67877 * 14 13 3 18 18 C 1.50701 * 109.47147 * 294.36703 * 17 14 13 19 19 C 1.38252 * 119.99537 * 98.75585 * 18 17 14 20 20 C 1.38223 * 119.99655 * 179.78784 * 19 18 17 21 21 C 1.38257 * 119.99909 * 0.45880 * 20 19 18 22 22 C 1.38219 * 119.99956 * 359.77097 * 21 20 19 23 23 C 1.38211 * 120.00183 * 279.02623 * 18 17 14 24 24 N 1.48019 * 119.99972 * 359.97438 * 23 18 17 25 25 O 1.21805 * 120.00430 * 185.79049 * 24 23 18 26 26 O 1.21804 * 120.00018 * 5.78872 * 24 23 18 27 27 H 1.09001 * 109.46799 * 54.04675 * 1 2 3 28 28 H 1.09006 * 109.46613 * 294.04854 * 1 2 3 29 29 H 1.09000 * 109.46891 * 174.04990 * 1 2 3 30 30 H 1.09001 * 109.47224 * 120.00001 * 2 1 3 31 31 H 1.08996 * 109.46794 * 239.99804 * 2 1 3 32 32 H 0.97001 * 120.00113 * 180.02562 * 8 7 5 33 33 H 1.00900 * 110.99981 * 23.09831 * 13 3 2 34 34 H 1.08999 * 109.47450 * 60.00403 * 16 14 13 35 35 H 1.09010 * 109.46964 * 180.02562 * 16 14 13 36 36 H 1.08999 * 109.47205 * 299.99640 * 16 14 13 37 37 H 1.08994 * 109.47563 * 54.37397 * 17 14 13 38 38 H 1.09009 * 109.46524 * 174.36834 * 17 14 13 39 39 H 1.07991 * 120.00373 * 359.97438 * 19 18 17 40 40 H 1.07996 * 120.00065 * 180.25721 * 20 19 18 41 41 H 1.07995 * 120.00250 * 179.78962 * 21 20 19 42 42 H 1.07996 * 119.99774 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5952 1.9851 -0.8342 5 6 3.5403 1.4448 -0.1421 6 1 4.1551 1.8861 0.6285 7 6 4.1282 0.8837 -1.2559 8 7 3.3797 0.3460 -2.1941 9 14 5.9879 0.8872 -1.4324 10 1 6.5961 1.5470 -0.2492 11 1 6.4789 -0.5112 -1.5255 12 1 6.3669 1.6279 -2.6623 13 7 1.6667 2.0939 1.2627 14 6 0.4898 2.9544 1.0832 15 1 -0.2441 2.4413 0.4618 16 6 0.9107 4.2589 0.4035 17 6 -0.1267 3.2664 2.4484 18 6 -0.6661 1.9980 3.0577 19 6 0.0778 1.3135 4.0008 20 6 -0.4189 0.1525 4.5629 21 6 -1.6553 -0.3294 4.1750 22 6 -2.3969 0.3525 3.2286 23 6 -1.9019 1.5160 2.6695 24 7 -2.6959 2.2460 1.6558 25 8 -3.8275 1.8818 1.3905 26 8 -2.2177 3.2111 1.0869 27 1 -0.3633 0.6034 -0.8319 28 1 -0.3633 0.4188 0.9385 29 1 -0.3633 -1.0221 -0.1065 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 3.7933 -0.0491 -2.9775 33 1 1.5083 1.4112 1.9887 34 1 1.3499 4.0366 -0.5690 35 1 0.0374 4.8977 0.2708 36 1 1.6446 4.7720 1.0250 37 1 0.6354 3.6886 3.1033 38 1 -0.9379 3.9840 2.3252 39 1 1.0455 1.6875 4.3006 40 1 0.1603 -0.3800 5.3026 41 1 -2.0419 -1.2383 4.6116 42 1 -3.3625 -0.0241 2.9253 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449243525.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:39 Heat of formation + Delta-G solvation = -0.428144 kcal Electronic energy + Delta-G solvation = -24858.637288 eV Core-core repulsion = 21420.036851 eV Total energy + Delta-G solvation = -3438.600437 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.30275 -40.67935 -38.79262 -37.65457 -35.69613 -33.76976 -32.98154 -32.50354 -30.57677 -28.31989 -28.11691 -26.81135 -24.79952 -23.67793 -23.10342 -21.65678 -21.27960 -19.96211 -19.57560 -18.60411 -18.31985 -17.14639 -17.12157 -16.65252 -16.26157 -15.73728 -15.51683 -15.13724 -14.87814 -14.68894 -14.05091 -13.81246 -13.49887 -13.35083 -13.26145 -13.15801 -12.89175 -12.80792 -12.66753 -12.51214 -12.46602 -12.29493 -12.10553 -12.03871 -11.87286 -11.73570 -11.55109 -11.48015 -10.99810 -10.51123 -10.40847 -10.04254 -8.88924 -8.05035 -6.16244 -1.15225 0.02944 0.37196 0.49633 1.41867 1.44260 1.56032 2.37652 2.45806 3.21349 3.37557 3.41781 3.63930 3.85000 4.01287 4.07886 4.14050 4.24066 4.26148 4.34977 4.45256 4.51205 4.54994 4.73067 4.79987 4.90742 4.93273 4.95036 5.01353 5.09791 5.10816 5.17945 5.22016 5.29275 5.39373 5.46925 5.54184 5.64373 5.73489 5.87092 6.34970 6.56434 6.69557 6.92535 6.99828 7.53566 8.99257 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019401 B = 0.005115 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.892791 B = 5473.293549 C = 5776.236878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.135 4.135 3 C 0.227 3.773 4 H -0.009 1.009 5 C -0.503 4.503 6 H 0.057 0.943 7 C 0.006 3.994 8 N -0.925 5.925 9 Si 0.958 3.042 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.286 1.286 13 N -0.676 5.676 14 C 0.099 3.901 15 H 0.020 0.980 16 C -0.128 4.128 17 C -0.090 4.090 18 C -0.025 4.025 19 C -0.124 4.124 20 C -0.049 4.049 21 C -0.115 4.115 22 C -0.065 4.065 23 C -0.066 4.066 24 N 0.034 4.966 25 O -0.195 6.195 26 O -0.177 6.177 27 H 0.022 0.978 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.039 0.961 31 H 0.067 0.933 32 H 0.258 0.742 33 H 0.328 0.672 34 H 0.026 0.974 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.164 0.836 40 H 0.181 0.819 41 H 0.182 0.818 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.494 -1.204 16.739 19.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.174 4.174 3 C 0.119 3.881 4 H 0.009 0.991 5 C -0.542 4.542 6 H 0.075 0.925 7 C -0.192 4.192 8 N -0.566 5.566 9 Si 0.784 3.216 10 H -0.190 1.190 11 H -0.207 1.207 12 H -0.213 1.213 13 N -0.308 5.308 14 C -0.011 4.011 15 H 0.038 0.962 16 C -0.186 4.186 17 C -0.127 4.127 18 C -0.026 4.026 19 C -0.142 4.142 20 C -0.066 4.066 21 C -0.133 4.133 22 C -0.084 4.084 23 C -0.150 4.150 24 N 0.545 4.455 25 O -0.405 6.405 26 O -0.389 6.389 27 H 0.041 0.959 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.146 0.854 34 H 0.045 0.955 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.181 0.819 40 H 0.198 0.802 41 H 0.199 0.801 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -8.689 -1.089 16.952 19.080 hybrid contribution -0.164 -0.411 -1.395 1.463 sum -8.853 -1.500 15.557 17.962 Atomic orbital electron populations 1.21781 0.97780 1.00109 0.99497 1.22006 0.92902 1.01141 1.01393 1.18898 0.94033 0.88796 0.86400 0.99072 1.21551 0.92652 1.35578 1.04441 0.92518 1.25724 1.02296 0.95475 0.95687 1.70028 1.36214 1.40364 1.09966 0.85510 0.80763 0.77504 0.77835 1.19047 1.20742 1.21262 1.60829 1.35345 1.25593 1.09020 1.21339 0.90393 0.94881 0.94468 0.96201 1.21661 1.00951 0.96476 0.99498 1.21127 1.01577 0.93904 0.96095 1.20069 0.90410 0.97352 0.94775 1.21591 1.00817 0.96086 0.95727 1.22140 0.94753 0.93300 0.96455 1.21662 0.94465 1.01140 0.96058 1.21361 1.01581 0.90871 0.94610 1.21212 0.95580 0.99367 0.98801 1.43959 1.00765 1.00166 1.00627 1.94467 1.04894 1.71392 1.69728 1.94512 1.73696 1.18704 1.52018 0.95900 0.93454 0.93083 0.94205 0.91421 0.93269 0.85394 0.95452 0.91391 0.91764 0.88158 0.88445 0.81880 0.80156 0.80061 0.82535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.56 8.60 71.98 0.62 -4.94 16 2 C -0.13 -6.43 5.10 30.60 0.16 -6.27 16 3 C 0.23 11.44 1.90 44.17 0.08 11.53 16 4 H -0.01 -0.50 6.70 -2.39 -0.02 -0.52 16 5 C -0.50 -27.79 8.84 25.60 0.23 -27.57 16 6 H 0.06 3.13 7.81 -2.91 -0.02 3.11 16 7 C 0.01 0.31 5.29 84.65 0.45 0.76 16 8 N -0.92 -54.05 11.29 21.44 0.24 -53.81 16 9 Si 0.96 44.16 29.54 68.60 2.03 46.18 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 13 N -0.68 -27.53 5.87 -473.30 -2.78 -30.31 16 14 C 0.10 3.63 1.27 44.91 0.06 3.68 16 15 H 0.02 0.83 4.64 -2.39 -0.01 0.82 16 16 C -0.13 -4.72 9.31 71.98 0.67 -4.05 16 17 C -0.09 -2.53 4.25 29.85 0.13 -2.40 16 18 C -0.02 -0.62 3.87 -19.87 -0.08 -0.70 16 19 C -0.12 -2.31 8.35 22.27 0.19 -2.13 16 20 C -0.05 -0.62 10.05 22.27 0.22 -0.40 16 21 C -0.12 -1.51 10.05 22.27 0.22 -1.28 16 22 C -0.07 -1.31 9.56 22.27 0.21 -1.10 16 23 C -0.07 -1.77 5.62 36.37 0.20 -1.57 16 24 N 0.03 1.12 4.45 -46.47 -0.21 0.91 16 25 O -0.20 -6.56 18.46 18.88 0.35 -6.21 16 26 O -0.18 -6.32 13.54 18.88 0.26 -6.06 16 27 H 0.02 1.01 7.97 -2.39 -0.02 0.99 16 28 H 0.05 1.76 4.82 -2.38 -0.01 1.75 16 29 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.04 1.79 8.02 -2.39 -0.02 1.77 16 31 H 0.07 3.71 5.94 -2.39 -0.01 3.70 16 32 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 33 H 0.33 12.01 5.78 -89.69 -0.52 11.49 16 34 H 0.03 1.16 7.14 -2.39 -0.02 1.15 16 35 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 36 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.10 2.47 8.02 -2.39 -0.02 2.46 16 38 H 0.10 2.79 6.00 -2.38 -0.01 2.78 16 39 H 0.16 2.59 8.04 -2.92 -0.02 2.57 16 40 H 0.18 0.95 8.06 -2.91 -0.02 0.93 16 41 H 0.18 1.01 8.06 -2.91 -0.02 0.98 16 42 H 0.16 2.81 7.62 -2.91 -0.02 2.79 16 Total: -1.00 -68.40 333.86 3.77 -64.64 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 0.52 Total: 21.10 kcal Atomic # 6 Polarization: -39.80 SS G_CDS: 3.36 Total: -36.44 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -2.74 Total: -83.21 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.60 Total: -12.27 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -68.40 3.77 -64.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449243525.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.210 kcal (2) G-P(sol) polarization free energy of solvation -68.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds