Wall clock time and date at job start Tue Mar 31 2020 06:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47370 * 2 1 4 4 H 1.09002 * 109.47086 * 305.17453 * 3 2 1 5 5 C 1.50697 * 109.47433 * 185.17531 * 3 2 1 6 6 H 1.08000 * 120.00131 * 244.64195 * 5 3 2 7 7 C 1.37880 * 119.99871 * 64.63508 * 5 3 2 8 8 N 1.31520 * 119.99965 * 195.75614 * 7 5 3 9 9 Si 1.86795 * 120.00136 * 15.76153 * 7 5 3 10 10 H 1.48498 * 109.47352 * 90.38042 * 9 7 5 11 11 H 1.48503 * 109.46976 * 210.38290 * 9 7 5 12 12 H 1.48507 * 109.47104 * 330.37609 * 9 7 5 13 13 N 1.46898 * 109.47446 * 65.17288 * 3 2 1 14 14 C 1.46904 * 111.00339 * 207.28472 * 13 3 2 15 15 H 1.08994 * 109.46874 * 327.15624 * 14 13 3 16 16 C 1.53001 * 109.46868 * 87.15310 * 14 13 3 17 17 C 1.52995 * 109.46773 * 207.15359 * 14 13 3 18 18 C 1.50700 * 109.47387 * 65.00245 * 17 14 13 19 19 C 1.38258 * 119.99796 * 260.31395 * 18 17 14 20 20 C 1.38217 * 119.99562 * 180.02562 * 19 18 17 21 21 C 1.38252 * 120.00056 * 359.97438 * 20 19 18 22 22 C 1.38209 * 120.00084 * 359.97438 * 21 20 19 23 23 C 1.38211 * 120.00130 * 80.04044 * 18 17 14 24 24 N 1.48022 * 119.99786 * 0.02562 * 23 18 17 25 25 O 1.21805 * 119.99756 * 173.47314 * 24 23 18 26 26 O 1.21796 * 120.00256 * 353.47180 * 24 23 18 27 27 H 1.08996 * 109.47003 * 304.77426 * 1 2 3 28 28 H 1.08999 * 109.46483 * 64.77496 * 1 2 3 29 29 H 1.08997 * 109.47050 * 184.77298 * 1 2 3 30 30 H 1.09003 * 109.46921 * 239.99257 * 2 1 3 31 31 H 1.09002 * 109.46932 * 120.00466 * 2 1 3 32 32 H 0.96995 * 120.00201 * 180.02562 * 8 7 5 33 33 H 1.00904 * 110.99753 * 83.33070 * 13 3 2 34 34 H 1.09007 * 109.47078 * 55.02121 * 16 14 13 35 35 H 1.08996 * 109.47089 * 295.01846 * 16 14 13 36 36 H 1.08999 * 109.46754 * 175.01472 * 16 14 13 37 37 H 1.09007 * 109.46977 * 185.00222 * 17 14 13 38 38 H 1.08997 * 109.47502 * 304.99888 * 17 14 13 39 39 H 1.07994 * 120.00232 * 359.97438 * 19 18 17 40 40 H 1.08001 * 119.99347 * 179.97438 * 20 19 18 41 41 H 1.08002 * 119.99930 * 179.97438 * 21 20 19 42 42 H 1.08002 * 119.99607 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6030 1.9823 -0.8400 5 6 3.5416 1.4444 -0.1282 6 1 4.1520 1.8200 0.6797 7 6 4.1360 0.9664 -1.2767 8 7 5.4188 0.6761 -1.2814 9 14 3.1196 0.7313 -2.8262 10 1 3.1531 1.9769 -3.6340 11 1 3.6817 -0.3898 -3.6215 12 1 1.7159 0.4196 -2.4548 13 7 1.6551 2.0980 1.2569 14 6 1.5231 3.5497 1.0747 15 1 2.2409 3.8888 0.3279 16 6 0.1045 3.8777 0.6046 17 6 1.7965 4.2573 2.4033 18 6 3.2319 4.0348 2.8049 19 6 3.5458 3.0663 3.7403 20 6 4.8623 2.8626 4.1089 21 6 5.8651 3.6270 3.5421 22 6 5.5513 4.5945 2.6063 23 6 4.2350 4.7951 2.2341 24 7 3.8994 5.8284 1.2286 25 8 4.7651 6.5781 0.8136 26 8 2.7578 5.9289 0.8164 27 1 -0.3633 0.5861 0.8441 28 1 -0.3632 0.4380 -0.9297 29 1 -0.3633 -1.0241 0.0855 30 1 1.8933 -0.5140 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 5.8371 0.3402 -2.0895 33 1 2.3121 1.8841 1.9923 34 1 -0.6168 3.4608 1.3076 35 1 -0.0597 3.4467 -0.3830 36 1 -0.0205 4.9594 0.5544 37 1 1.6122 5.3258 2.2906 38 1 1.1375 3.8541 3.1722 39 1 2.7624 2.4694 4.1834 40 1 5.1074 2.1063 4.8399 41 1 6.8937 3.4682 3.8305 42 1 6.3347 5.1920 2.1638 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449243526.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:43 Heat of formation + Delta-G solvation = 16.506102 kcal Electronic energy + Delta-G solvation = -24929.391865 eV Core-core repulsion = 21491.525751 eV Total energy + Delta-G solvation = -3437.866113 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.93127 -39.44209 -37.18564 -36.17370 -34.17434 -32.08041 -31.75272 -31.34861 -29.27587 -27.00166 -26.37638 -25.57019 -22.65303 -22.44038 -21.93158 -20.08825 -19.55005 -18.71203 -18.24242 -17.25320 -16.95837 -16.12977 -15.62808 -14.97398 -14.70486 -14.58222 -13.99165 -13.76527 -13.36194 -12.92509 -12.71876 -12.39656 -12.32521 -12.11525 -11.84806 -11.74758 -11.54352 -11.24750 -11.10421 -11.05093 -10.88029 -10.76857 -10.59183 -10.47718 -10.23637 -10.12097 -9.73817 -9.52919 -9.38843 -9.22191 -8.91485 -8.46224 -7.34225 -6.17642 -4.12936 0.17633 1.11890 1.64819 1.81008 3.26791 3.36014 3.40174 3.46670 4.38680 4.50123 4.54910 4.78737 5.02597 5.06826 5.14021 5.21413 5.31246 5.45249 5.63208 5.69149 5.90085 6.01443 6.06888 6.09675 6.15184 6.18309 6.21108 6.25551 6.33185 6.44563 6.49674 6.65064 6.73825 6.78357 6.82194 6.89561 7.08995 7.21805 7.38140 7.59747 8.03867 8.05782 8.37559 8.49540 8.87585 9.50570 10.95301 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013406 B = 0.006928 C = 0.006381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.149343 B = 4040.775337 C = 4386.667660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.108 4.108 3 C 0.188 3.812 4 H 0.028 0.972 5 C -0.548 4.548 6 H 0.065 0.935 7 C 0.080 3.920 8 N -0.891 5.891 9 Si 0.861 3.139 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.248 1.248 13 N -0.680 5.680 14 C 0.097 3.903 15 H 0.057 0.943 16 C -0.130 4.130 17 C -0.097 4.097 18 C -0.006 4.006 19 C -0.119 4.119 20 C -0.061 4.061 21 C -0.124 4.124 22 C -0.050 4.050 23 C -0.036 4.036 24 N 0.036 4.964 25 O -0.184 6.184 26 O -0.148 6.148 27 H 0.062 0.938 28 H 0.036 0.964 29 H 0.030 0.970 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.263 0.737 33 H 0.329 0.671 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.098 0.902 38 H 0.081 0.919 39 H 0.146 0.854 40 H 0.139 0.861 41 H 0.142 0.858 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.110 5.257 11.431 13.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.146 4.146 3 C 0.078 3.922 4 H 0.046 0.954 5 C -0.586 4.586 6 H 0.083 0.917 7 C -0.124 4.124 8 N -0.528 5.528 9 Si 0.688 3.312 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.172 1.172 13 N -0.311 5.311 14 C -0.013 4.013 15 H 0.075 0.925 16 C -0.188 4.188 17 C -0.135 4.135 18 C -0.007 4.007 19 C -0.137 4.137 20 C -0.080 4.080 21 C -0.143 4.143 22 C -0.069 4.069 23 C -0.120 4.120 24 N 0.553 4.447 25 O -0.394 6.394 26 O -0.365 6.365 27 H 0.081 0.919 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.147 0.853 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.116 0.884 38 H 0.099 0.901 39 H 0.163 0.837 40 H 0.157 0.843 41 H 0.160 0.840 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.439 4.601 11.697 13.330 hybrid contribution 0.815 0.207 -1.436 1.664 sum -3.623 4.808 10.261 11.897 Atomic orbital electron populations 1.21748 0.97976 0.99238 1.01089 1.21786 0.93347 0.99026 1.00441 1.19490 0.93977 0.90785 0.87900 0.95438 1.21606 0.90535 1.43264 1.03241 0.91662 1.24928 0.94703 0.93863 0.98881 1.69990 1.11417 1.42984 1.28364 0.87228 0.82354 0.77933 0.83732 1.20656 1.21424 1.17209 1.60935 1.53651 1.06916 1.09601 1.21301 0.97351 0.88659 0.93970 0.92468 1.21711 0.96008 1.00047 1.01064 1.21274 0.89505 1.03314 0.99361 1.19914 0.96156 0.91913 0.92718 1.21149 0.97500 0.97327 0.97764 1.21548 0.92630 0.96659 0.97122 1.21108 1.00501 0.95590 0.97062 1.20984 0.94032 0.96912 0.94967 1.20881 0.96000 0.96994 0.98105 1.43499 1.00342 1.00651 1.00253 1.94499 1.43321 1.40240 1.61318 1.94472 1.05885 1.76368 1.59814 0.91947 0.94492 0.95081 0.93174 0.93159 0.92757 0.85276 0.92786 0.92952 0.92817 0.88431 0.90082 0.83658 0.84317 0.84044 0.83480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.86 37.16 0.37 -2.26 16 2 C -0.11 -2.33 4.90 -26.73 -0.13 -2.46 16 3 C 0.19 4.32 1.32 -68.87 -0.09 4.23 16 4 H 0.03 0.68 5.99 -51.93 -0.31 0.37 16 5 C -0.55 -14.91 8.84 -34.44 -0.30 -15.21 16 6 H 0.07 1.93 7.92 -52.49 -0.42 1.52 16 7 C 0.08 2.27 5.32 -17.82 -0.09 2.18 16 8 N -0.89 -26.86 13.96 55.43 0.77 -26.09 16 9 Si 0.86 21.51 25.80 -169.99 -4.39 17.12 16 10 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.25 -5.83 5.51 56.52 0.31 -5.52 16 13 N -0.68 -13.18 5.45 -100.96 -0.55 -13.73 16 14 C 0.10 1.76 1.78 -67.71 -0.12 1.64 16 15 H 0.06 1.26 6.11 -51.93 -0.32 0.94 16 16 C -0.13 -2.09 9.41 37.16 0.35 -1.74 16 17 C -0.10 -1.45 4.20 -27.89 -0.12 -1.57 16 18 C -0.01 -0.09 4.61 -104.62 -0.48 -0.57 16 19 C -0.12 -1.54 8.29 -39.58 -0.33 -1.87 16 20 C -0.06 -0.72 10.05 -39.58 -0.40 -1.12 16 21 C -0.12 -1.54 10.05 -39.59 -0.40 -1.94 16 22 C -0.05 -0.75 9.56 -39.59 -0.38 -1.13 16 23 C -0.04 -0.62 6.83 -79.95 -0.55 -1.17 16 24 N 0.04 0.69 4.45 33.96 0.15 0.84 16 25 O -0.18 -3.56 18.47 -29.46 -0.54 -4.11 16 26 O -0.15 -2.80 13.43 -29.46 -0.40 -3.20 16 27 H 0.06 1.09 7.63 -51.93 -0.40 0.70 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 1.16 4.97 -51.93 -0.26 0.90 16 31 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.33 6.33 5.88 -39.29 -0.23 6.10 16 34 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 35 H 0.05 0.90 7.68 -51.93 -0.40 0.50 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.10 1.44 6.10 -51.93 -0.32 1.12 16 38 H 0.08 1.03 8.01 -51.93 -0.42 0.62 16 39 H 0.15 1.55 8.02 -52.49 -0.42 1.13 16 40 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 42 H 0.15 2.04 7.63 -52.49 -0.40 1.64 16 LS Contribution 337.34 15.07 5.08 5.08 Total: -1.00 -31.39 337.34 -8.61 -40.00 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -6.07 Total: 7.06 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: -2.67 Total: -22.98 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.37 Total: -38.98 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -0.94 Total: -7.31 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.39 Total: 17.12 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.39 -8.61 -40.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449243526.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.507 kcal (2) G-P(sol) polarization free energy of solvation -31.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds