Wall clock time and date at job start Tue Mar 31 2020 06:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47370 * 2 1 4 4 H 1.09002 * 109.47086 * 305.17453 * 3 2 1 5 5 C 1.50697 * 109.47433 * 185.17531 * 3 2 1 6 6 H 1.08000 * 120.00131 * 244.64195 * 5 3 2 7 7 C 1.37880 * 119.99871 * 64.63508 * 5 3 2 8 8 N 1.31520 * 119.99965 * 195.75614 * 7 5 3 9 9 Si 1.86795 * 120.00136 * 15.76153 * 7 5 3 10 10 H 1.48498 * 109.47352 * 90.38042 * 9 7 5 11 11 H 1.48503 * 109.46976 * 210.38290 * 9 7 5 12 12 H 1.48507 * 109.47104 * 330.37609 * 9 7 5 13 13 N 1.46898 * 109.47446 * 65.17288 * 3 2 1 14 14 C 1.46904 * 111.00339 * 207.28472 * 13 3 2 15 15 H 1.08994 * 109.46874 * 327.15624 * 14 13 3 16 16 C 1.53001 * 109.46868 * 87.15310 * 14 13 3 17 17 C 1.52995 * 109.46773 * 207.15359 * 14 13 3 18 18 C 1.50700 * 109.47387 * 65.00245 * 17 14 13 19 19 C 1.38258 * 119.99796 * 260.31395 * 18 17 14 20 20 C 1.38217 * 119.99562 * 180.02562 * 19 18 17 21 21 C 1.38252 * 120.00056 * 359.97438 * 20 19 18 22 22 C 1.38209 * 120.00084 * 359.97438 * 21 20 19 23 23 C 1.38211 * 120.00130 * 80.04044 * 18 17 14 24 24 N 1.48022 * 119.99786 * 0.02562 * 23 18 17 25 25 O 1.21805 * 119.99756 * 173.47314 * 24 23 18 26 26 O 1.21796 * 120.00256 * 353.47180 * 24 23 18 27 27 H 1.08996 * 109.47003 * 304.77426 * 1 2 3 28 28 H 1.08999 * 109.46483 * 64.77496 * 1 2 3 29 29 H 1.08997 * 109.47050 * 184.77298 * 1 2 3 30 30 H 1.09003 * 109.46921 * 239.99257 * 2 1 3 31 31 H 1.09002 * 109.46932 * 120.00466 * 2 1 3 32 32 H 0.96995 * 120.00201 * 180.02562 * 8 7 5 33 33 H 1.00904 * 110.99753 * 83.33070 * 13 3 2 34 34 H 1.09007 * 109.47078 * 55.02121 * 16 14 13 35 35 H 1.08996 * 109.47089 * 295.01846 * 16 14 13 36 36 H 1.08999 * 109.46754 * 175.01472 * 16 14 13 37 37 H 1.09007 * 109.46977 * 185.00222 * 17 14 13 38 38 H 1.08997 * 109.47502 * 304.99888 * 17 14 13 39 39 H 1.07994 * 120.00232 * 359.97438 * 19 18 17 40 40 H 1.08001 * 119.99347 * 179.97438 * 20 19 18 41 41 H 1.08002 * 119.99930 * 179.97438 * 21 20 19 42 42 H 1.08002 * 119.99607 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6030 1.9823 -0.8400 5 6 3.5416 1.4444 -0.1282 6 1 4.1520 1.8200 0.6797 7 6 4.1360 0.9664 -1.2767 8 7 5.4188 0.6761 -1.2814 9 14 3.1196 0.7313 -2.8262 10 1 3.1531 1.9769 -3.6340 11 1 3.6817 -0.3898 -3.6215 12 1 1.7159 0.4196 -2.4548 13 7 1.6551 2.0980 1.2569 14 6 1.5231 3.5497 1.0747 15 1 2.2409 3.8888 0.3279 16 6 0.1045 3.8777 0.6046 17 6 1.7965 4.2573 2.4033 18 6 3.2319 4.0348 2.8049 19 6 3.5458 3.0663 3.7403 20 6 4.8623 2.8626 4.1089 21 6 5.8651 3.6270 3.5421 22 6 5.5513 4.5945 2.6063 23 6 4.2350 4.7951 2.2341 24 7 3.8994 5.8284 1.2286 25 8 4.7651 6.5781 0.8136 26 8 2.7578 5.9289 0.8164 27 1 -0.3633 0.5861 0.8441 28 1 -0.3632 0.4380 -0.9297 29 1 -0.3633 -1.0241 0.0855 30 1 1.8933 -0.5140 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 5.8371 0.3402 -2.0895 33 1 2.3121 1.8841 1.9923 34 1 -0.6168 3.4608 1.3076 35 1 -0.0597 3.4467 -0.3830 36 1 -0.0205 4.9594 0.5544 37 1 1.6122 5.3258 2.2906 38 1 1.1375 3.8541 3.1722 39 1 2.7624 2.4694 4.1834 40 1 5.1074 2.1063 4.8399 41 1 6.8937 3.4682 3.8305 42 1 6.3347 5.1920 2.1638 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449243526.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:42 Heat of formation + Delta-G solvation = -2.283512 kcal Electronic energy + Delta-G solvation = -24930.206643 eV Core-core repulsion = 21491.525751 eV Total energy + Delta-G solvation = -3438.680892 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.32194 -40.61362 -38.68784 -37.67513 -35.74224 -34.04795 -32.97855 -32.57738 -30.78877 -28.25809 -28.23632 -26.81743 -24.38318 -23.68328 -23.15271 -21.60792 -21.20984 -19.97765 -19.65932 -19.14067 -18.57091 -17.18437 -17.09390 -16.70498 -16.00235 -15.81988 -15.51755 -15.20046 -14.82472 -14.66851 -14.16960 -13.94157 -13.53688 -13.44233 -13.29304 -13.22725 -12.99093 -12.83633 -12.60554 -12.51610 -12.41834 -12.33490 -12.12861 -11.96732 -11.82810 -11.59055 -11.46238 -11.34356 -11.08085 -10.62874 -10.48937 -10.02838 -9.03172 -8.37819 -6.34550 -1.12606 0.04588 0.36210 0.52889 1.25238 1.31369 1.39622 2.28542 2.38614 2.99282 3.39687 3.42494 3.59176 3.83544 4.00675 4.09408 4.14623 4.24529 4.45863 4.47673 4.55478 4.60596 4.75895 4.76600 4.81362 4.94812 4.95636 4.97890 5.09774 5.14898 5.18179 5.21575 5.28636 5.32279 5.38424 5.54210 5.54948 5.58574 5.65331 5.75894 6.10193 6.43115 6.58322 6.66571 6.87645 7.32188 8.78044 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013406 B = 0.006928 C = 0.006381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.149343 B = 4040.775337 C = 4386.667660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.107 4.107 3 C 0.194 3.806 4 H 0.014 0.986 5 C -0.538 4.538 6 H 0.032 0.968 7 C 0.025 3.975 8 N -0.936 5.936 9 Si 0.912 3.088 10 H -0.289 1.289 11 H -0.285 1.285 12 H -0.222 1.222 13 N -0.662 5.662 14 C 0.097 3.903 15 H 0.011 0.989 16 C -0.125 4.125 17 C -0.089 4.089 18 C -0.022 4.022 19 C -0.121 4.121 20 C -0.052 4.052 21 C -0.122 4.122 22 C -0.072 4.072 23 C -0.067 4.067 24 N 0.035 4.965 25 O -0.220 6.220 26 O -0.154 6.154 27 H 0.072 0.928 28 H 0.035 0.965 29 H 0.053 0.947 30 H 0.033 0.967 31 H 0.050 0.950 32 H 0.262 0.738 33 H 0.331 0.669 34 H 0.075 0.925 35 H 0.036 0.964 36 H 0.066 0.934 37 H 0.096 0.904 38 H 0.112 0.888 39 H 0.175 0.825 40 H 0.181 0.819 41 H 0.174 0.826 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.138 3.737 13.378 15.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.146 4.146 3 C 0.084 3.916 4 H 0.032 0.968 5 C -0.577 4.577 6 H 0.050 0.950 7 C -0.174 4.174 8 N -0.575 5.575 9 Si 0.737 3.263 10 H -0.216 1.216 11 H -0.211 1.211 12 H -0.145 1.145 13 N -0.293 5.293 14 C -0.013 4.013 15 H 0.029 0.971 16 C -0.183 4.183 17 C -0.126 4.126 18 C -0.024 4.024 19 C -0.139 4.139 20 C -0.070 4.070 21 C -0.140 4.140 22 C -0.091 4.091 23 C -0.151 4.151 24 N 0.546 4.454 25 O -0.422 6.422 26 O -0.373 6.373 27 H 0.091 0.909 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.149 0.851 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.084 0.916 37 H 0.115 0.885 38 H 0.130 0.870 39 H 0.193 0.807 40 H 0.198 0.802 41 H 0.191 0.809 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.460 3.119 13.640 15.411 hybrid contribution 1.514 0.659 -1.898 2.516 sum -4.946 3.778 11.742 13.289 Atomic orbital electron populations 1.21650 0.94920 1.01012 1.01514 1.21696 0.96013 0.97195 0.99671 1.19354 0.90907 0.92193 0.89191 0.96784 1.21919 0.92746 1.41230 1.01828 0.94993 1.25668 0.95595 0.94290 1.01821 1.70103 1.13165 1.45186 1.29082 0.86399 0.82444 0.77351 0.80102 1.21631 1.21144 1.14465 1.60967 1.52808 1.07639 1.07839 1.21308 0.97475 0.87836 0.94711 0.97105 1.21669 0.94949 1.01019 1.00654 1.21194 0.90016 1.03064 0.98363 1.20171 0.95984 0.92605 0.93630 1.21602 0.99087 0.96419 0.96783 1.22118 0.91822 0.96366 0.96660 1.21595 1.02564 0.94212 0.95668 1.21275 0.93449 0.98200 0.96203 1.21252 0.97552 0.97605 0.98698 1.43866 1.00048 1.00950 1.00502 1.94470 1.43464 1.41621 1.62681 1.94425 1.06160 1.76548 1.60144 0.90886 0.94607 0.92758 0.94837 0.93160 0.92886 0.85062 0.90559 0.94477 0.91551 0.88548 0.86961 0.80745 0.80152 0.80881 0.83652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.41 9.86 71.98 0.71 -3.70 16 2 C -0.11 -4.41 4.90 30.59 0.15 -4.26 16 3 C 0.19 8.73 1.32 44.17 0.06 8.79 16 4 H 0.01 0.69 5.99 -2.39 -0.01 0.67 16 5 C -0.54 -29.65 8.84 25.60 0.23 -29.42 16 6 H 0.03 1.94 7.92 -2.91 -0.02 1.91 16 7 C 0.03 1.46 5.32 84.65 0.45 1.91 16 8 N -0.94 -57.88 13.96 21.45 0.30 -57.58 16 9 Si 0.91 44.68 25.80 68.60 1.77 46.45 16 10 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 11 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 12 H -0.22 -9.86 5.51 99.48 0.55 -9.31 16 13 N -0.66 -24.51 5.45 -473.34 -2.58 -27.09 16 14 C 0.10 3.41 1.78 44.91 0.08 3.49 16 15 H 0.01 0.49 6.11 -2.39 -0.01 0.47 16 16 C -0.13 -3.77 9.41 71.98 0.68 -3.09 16 17 C -0.09 -2.52 4.20 29.85 0.13 -2.39 16 18 C -0.02 -0.67 4.61 -19.87 -0.09 -0.76 16 19 C -0.12 -2.80 8.29 22.27 0.18 -2.62 16 20 C -0.05 -1.05 10.05 22.27 0.22 -0.83 16 21 C -0.12 -2.83 10.05 22.27 0.22 -2.60 16 22 C -0.07 -2.21 9.56 22.27 0.21 -1.99 16 23 C -0.07 -2.36 6.83 36.37 0.25 -2.11 16 24 N 0.04 1.41 4.45 -46.47 -0.21 1.20 16 25 O -0.22 -9.14 18.47 18.88 0.35 -8.79 16 26 O -0.15 -6.10 13.43 18.89 0.25 -5.84 16 27 H 0.07 2.25 7.63 -2.39 -0.02 2.24 16 28 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.03 1.47 4.97 -2.39 -0.01 1.46 16 31 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 33 H 0.33 12.08 5.88 -89.69 -0.53 11.55 16 34 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 35 H 0.04 1.21 7.68 -2.39 -0.02 1.19 16 36 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.10 2.76 6.10 -2.38 -0.01 2.75 16 38 H 0.11 2.45 8.01 -2.39 -0.02 2.43 16 39 H 0.18 2.96 8.02 -2.91 -0.02 2.94 16 40 H 0.18 2.15 8.06 -2.91 -0.02 2.13 16 41 H 0.17 2.81 8.06 -2.91 -0.02 2.78 16 42 H 0.15 4.31 7.63 -2.91 -0.02 4.28 16 Total: -1.00 -71.23 337.34 3.70 -67.53 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 0.34 Total: 23.71 kcal Atomic # 6 Polarization: -43.07 SS G_CDS: 3.48 Total: -39.59 kcal Atomic # 7 Polarization: -80.98 SS G_CDS: -2.49 Total: -83.47 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: 0.60 Total: -14.63 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.77 Total: 46.45 kcal Total: -71.23 3.70 -67.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449243526.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.244 kcal (2) G-P(sol) polarization free energy of solvation -71.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds