Wall clock time and date at job start Tue Mar 31 2020 06:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46785 * 2 1 4 4 H 1.09000 * 109.47483 * 53.87490 * 3 2 1 5 5 C 1.50696 * 109.47176 * 173.88305 * 3 2 1 6 6 H 1.07999 * 120.00626 * 119.99462 * 5 3 2 7 7 C 1.37877 * 119.99845 * 299.99488 * 5 3 2 8 8 N 1.31512 * 120.00013 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 120.00291 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46447 * 60.00343 * 9 7 5 11 11 H 1.48497 * 109.47298 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47222 * 300.00644 * 9 7 5 13 13 N 1.46909 * 109.47149 * 293.88099 * 3 2 1 14 14 C 1.46892 * 111.00256 * 159.01828 * 13 3 2 15 15 H 1.09003 * 109.47152 * 31.70249 * 14 13 3 16 16 C 1.53002 * 109.47190 * 271.70531 * 14 13 3 17 17 C 1.53004 * 109.47347 * 151.70020 * 14 13 3 18 18 C 1.50694 * 109.47070 * 295.00042 * 17 14 13 19 19 C 1.38258 * 119.99994 * 264.61661 * 18 17 14 20 20 C 1.38220 * 119.99759 * 179.97438 * 19 18 17 21 21 C 1.38253 * 119.99977 * 0.02699 * 20 19 18 22 22 C 1.38214 * 120.00322 * 359.97438 * 21 20 19 23 23 C 1.38215 * 120.00002 * 84.34799 * 18 17 14 24 24 N 1.48024 * 120.00022 * 359.97438 * 23 18 17 25 25 O 1.21801 * 119.99967 * 218.72488 * 24 23 18 26 26 O 1.21802 * 119.99888 * 38.72310 * 24 23 18 27 27 H 1.09005 * 109.46914 * 175.99809 * 1 2 3 28 28 H 1.08994 * 109.47460 * 55.99737 * 1 2 3 29 29 H 1.09005 * 109.47006 * 295.99115 * 1 2 3 30 30 H 1.08998 * 109.47160 * 119.99765 * 2 1 3 31 31 H 1.09001 * 109.46729 * 240.00101 * 2 1 3 32 32 H 0.97003 * 120.00128 * 180.02562 * 8 7 5 33 33 H 1.00900 * 110.99812 * 35.06057 * 13 3 2 34 34 H 1.09000 * 109.46857 * 184.95516 * 16 14 13 35 35 H 1.09009 * 109.46653 * 304.95026 * 16 14 13 36 36 H 1.08996 * 109.47204 * 64.95012 * 16 14 13 37 37 H 1.09002 * 109.46615 * 55.00156 * 17 14 13 38 38 H 1.08999 * 109.47230 * 174.99736 * 17 14 13 39 39 H 1.07996 * 119.99977 * 0.02562 * 19 18 17 40 40 H 1.07997 * 119.99816 * 180.02562 * 20 19 18 41 41 H 1.08004 * 119.99652 * 179.97438 * 21 20 19 42 42 H 1.07998 * 119.99704 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5898 1.9870 0.8301 5 6 3.5392 1.4453 0.1514 6 1 4.1588 1.8848 -0.6163 7 6 4.1202 0.8868 1.2701 8 7 3.3659 0.3511 2.2048 9 14 5.9788 0.8895 1.4576 10 1 6.4741 2.2895 1.4572 11 1 6.3482 0.2347 2.7382 12 1 6.5915 0.1474 0.3267 13 7 1.6744 2.0911 -1.2665 14 6 1.6854 3.5537 -1.1313 15 1 2.4437 3.8458 -0.4048 16 6 0.3122 4.0323 -0.6556 17 6 2.0057 4.1888 -2.4860 18 6 3.4068 3.8159 -2.8968 19 6 4.4576 4.6728 -2.6265 20 6 5.7427 4.3305 -3.0029 21 6 5.9773 3.1316 -3.6501 22 6 4.9268 2.2750 -3.9204 23 6 3.6421 2.6148 -3.5389 24 7 2.5180 1.6945 -3.8225 25 8 2.6714 0.4918 -3.7060 26 8 1.4397 2.1399 -4.1722 27 1 -0.3633 -1.0252 -0.0717 28 1 -0.3634 0.5747 -0.8519 29 1 -0.3633 0.4504 0.9238 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.7745 -0.0415 2.9920 33 1 0.7776 1.7649 -1.5941 34 1 0.2927 5.1220 -0.6396 35 1 -0.4563 3.6650 -1.3359 36 1 0.1219 3.6506 0.3475 37 1 1.2994 3.8266 -3.2330 38 1 1.9266 5.2730 -2.4068 39 1 4.2743 5.6092 -2.1206 40 1 6.5636 4.9997 -2.7914 41 1 6.9815 2.8644 -3.9446 42 1 5.1101 1.3386 -4.4264 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449243527.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:46 Heat of formation + Delta-G solvation = 13.680090 kcal Electronic energy + Delta-G solvation = -25287.778623 eV Core-core repulsion = 21849.789965 eV Total energy + Delta-G solvation = -3437.988658 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.48585 -39.15205 -37.08674 -35.75442 -34.11105 -32.01822 -31.51286 -31.14943 -28.75848 -26.82157 -26.07339 -25.38473 -22.81797 -22.34394 -21.64771 -20.13125 -19.53186 -18.40623 -17.91524 -16.80560 -16.15320 -16.06542 -15.28210 -14.82553 -14.59510 -14.19308 -14.09251 -13.58045 -13.34815 -12.86422 -12.68534 -12.40014 -12.31213 -11.92361 -11.77183 -11.65605 -11.34870 -11.05347 -10.93109 -10.83977 -10.74796 -10.65292 -10.50726 -10.33639 -9.94600 -9.88951 -9.64094 -9.51430 -9.16887 -9.03527 -8.71625 -8.32506 -7.27361 -5.94578 -3.97963 0.62974 1.27624 1.81443 2.21288 3.30632 3.36035 3.38443 3.62060 4.44363 4.67815 4.73095 4.90028 5.13535 5.23210 5.28863 5.35488 5.46197 5.52657 5.65842 5.80230 5.88713 5.92313 6.13438 6.15568 6.25906 6.29269 6.29777 6.32142 6.38308 6.48946 6.56003 6.65496 6.71335 6.96811 7.19048 7.20446 7.26234 7.59347 7.85310 7.92631 8.32311 8.43913 8.44868 8.77516 9.07572 9.66038 11.10769 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.011683 B = 0.008749 C = 0.006639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.029991 B = 3199.449604 C = 4216.659900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.124 4.124 3 C 0.225 3.775 4 H 0.000 1.000 5 C -0.486 4.486 6 H 0.054 0.946 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.690 5.690 14 C 0.092 3.908 15 H 0.083 0.917 16 C -0.173 4.173 17 C -0.106 4.106 18 C 0.009 3.991 19 C -0.121 4.121 20 C -0.081 4.081 21 C -0.128 4.128 22 C -0.066 4.066 23 C 0.003 3.997 24 N 0.058 4.942 25 O -0.141 6.141 26 O -0.183 6.183 27 H 0.036 0.964 28 H 0.035 0.965 29 H 0.039 0.961 30 H 0.097 0.903 31 H 0.045 0.955 32 H 0.259 0.741 33 H 0.324 0.676 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.105 0.895 38 H 0.074 0.926 39 H 0.136 0.864 40 H 0.132 0.868 41 H 0.136 0.864 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.048 8.658 -9.987 13.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C 0.118 3.882 4 H 0.017 0.983 5 C -0.525 4.525 6 H 0.073 0.927 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.322 5.322 14 C -0.019 4.019 15 H 0.101 0.899 16 C -0.232 4.232 17 C -0.143 4.143 18 C 0.007 3.993 19 C -0.140 4.140 20 C -0.099 4.099 21 C -0.147 4.147 22 C -0.086 4.086 23 C -0.079 4.079 24 N 0.581 4.419 25 O -0.365 6.365 26 O -0.394 6.394 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.115 0.885 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.143 0.857 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.123 0.877 38 H 0.093 0.907 39 H 0.154 0.846 40 H 0.150 0.850 41 H 0.154 0.846 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.223 9.018 -9.928 13.595 hybrid contribution 0.072 -0.219 0.886 0.915 sum 2.296 8.799 -9.042 12.824 Atomic orbital electron populations 1.21856 0.99701 0.99468 0.99482 1.21718 0.91191 1.00171 1.03133 1.19077 0.95179 0.90116 0.83808 0.98283 1.21052 0.91209 1.36571 1.03658 0.92745 1.24898 0.97609 0.95749 0.96012 1.69860 1.34500 1.39596 1.09471 0.86708 0.86424 0.77950 0.77206 1.20649 1.21465 1.20299 1.60782 1.34274 1.02763 1.34419 1.21388 0.96157 0.90222 0.94134 0.89874 1.22437 0.98338 1.00731 1.01676 1.21286 0.92273 1.00457 1.00331 1.19557 0.97722 0.90340 0.91651 1.21031 0.91712 1.00239 1.00989 1.21378 0.97038 0.96347 0.95164 1.20990 0.98575 0.94409 1.00686 1.20848 0.89914 0.99786 0.98011 1.20597 0.86924 0.92313 1.08114 1.43073 1.01347 1.01250 0.96224 1.94527 1.89498 0.97949 1.54570 1.94328 1.14214 1.80929 1.49975 0.94490 0.94555 0.94209 0.88497 0.93639 0.93119 0.85748 0.93047 0.92807 0.92424 0.87650 0.90728 0.84567 0.84993 0.84608 0.84335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.81 37.16 0.36 -2.66 16 2 C -0.12 -3.01 5.39 -26.73 -0.14 -3.16 16 3 C 0.23 5.53 1.87 -68.86 -0.13 5.41 16 4 H 0.00 -0.01 7.42 -51.93 -0.39 -0.40 16 5 C -0.49 -13.17 8.29 -34.44 -0.29 -13.45 16 6 H 0.05 1.51 7.81 -52.49 -0.41 1.10 16 7 C 0.06 1.59 5.29 -17.82 -0.09 1.50 16 8 N -0.89 -25.49 11.29 55.43 0.63 -24.87 16 9 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 N -0.69 -14.38 3.51 -100.95 -0.35 -14.73 16 14 C 0.09 1.66 2.37 -67.71 -0.16 1.50 16 15 H 0.08 1.71 7.45 -51.93 -0.39 1.32 16 16 C -0.17 -2.72 9.18 37.16 0.34 -2.37 16 17 C -0.11 -1.63 4.67 -27.88 -0.13 -1.76 16 18 C 0.01 0.14 5.02 -104.63 -0.53 -0.39 16 19 C -0.12 -1.65 9.68 -39.58 -0.38 -2.03 16 20 C -0.08 -0.99 10.05 -39.58 -0.40 -1.39 16 21 C -0.13 -1.64 10.05 -39.58 -0.40 -2.03 16 22 C -0.07 -1.02 9.68 -39.58 -0.38 -1.40 16 23 C 0.00 0.05 6.07 -79.94 -0.49 -0.44 16 24 N 0.06 1.12 2.79 33.96 0.09 1.22 16 25 O -0.14 -2.99 18.98 -29.46 -0.56 -3.55 16 26 O -0.18 -3.46 15.68 -29.46 -0.46 -3.92 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.04 0.69 6.35 -51.93 -0.33 0.36 16 29 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.10 2.64 5.93 -51.93 -0.31 2.33 16 31 H 0.04 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.32 6.68 6.05 -39.29 -0.24 6.44 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.80 8.03 -51.92 -0.42 0.38 16 36 H 0.06 0.99 7.69 -51.93 -0.40 0.59 16 37 H 0.11 1.69 5.32 -51.93 -0.28 1.41 16 38 H 0.07 0.94 8.05 -51.93 -0.42 0.52 16 39 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 41 H 0.14 1.32 8.06 -52.48 -0.42 0.90 16 42 H 0.14 1.94 8.03 -52.49 -0.42 1.52 16 LS Contribution 343.71 15.07 5.18 5.18 Total: -1.00 -29.84 343.71 -9.39 -39.23 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -6.08 Total: 7.59 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: -2.81 Total: -22.68 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.37 Total: -38.38 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: -1.02 Total: -7.47 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.84 -9.39 -39.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449243527.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.913 kcal (2) G-P(sol) polarization free energy of solvation -29.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds