Wall clock time and date at job start Tue Mar 31 2020 06:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46785 * 2 1 4 4 H 1.09000 * 109.47483 * 53.87490 * 3 2 1 5 5 C 1.50696 * 109.47176 * 173.88305 * 3 2 1 6 6 H 1.07999 * 120.00626 * 119.99462 * 5 3 2 7 7 C 1.37877 * 119.99845 * 299.99488 * 5 3 2 8 8 N 1.31512 * 120.00013 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 120.00291 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46447 * 60.00343 * 9 7 5 11 11 H 1.48497 * 109.47298 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47222 * 300.00644 * 9 7 5 13 13 N 1.46909 * 109.47149 * 293.88099 * 3 2 1 14 14 C 1.46892 * 111.00256 * 159.01828 * 13 3 2 15 15 H 1.09003 * 109.47152 * 31.70249 * 14 13 3 16 16 C 1.53002 * 109.47190 * 271.70531 * 14 13 3 17 17 C 1.53004 * 109.47347 * 151.70020 * 14 13 3 18 18 C 1.50694 * 109.47070 * 295.00042 * 17 14 13 19 19 C 1.38258 * 119.99994 * 264.61661 * 18 17 14 20 20 C 1.38220 * 119.99759 * 179.97438 * 19 18 17 21 21 C 1.38253 * 119.99977 * 0.02699 * 20 19 18 22 22 C 1.38214 * 120.00322 * 359.97438 * 21 20 19 23 23 C 1.38215 * 120.00002 * 84.34799 * 18 17 14 24 24 N 1.48024 * 120.00022 * 359.97438 * 23 18 17 25 25 O 1.21801 * 119.99967 * 218.72488 * 24 23 18 26 26 O 1.21802 * 119.99888 * 38.72310 * 24 23 18 27 27 H 1.09005 * 109.46914 * 175.99809 * 1 2 3 28 28 H 1.08994 * 109.47460 * 55.99737 * 1 2 3 29 29 H 1.09005 * 109.47006 * 295.99115 * 1 2 3 30 30 H 1.08998 * 109.47160 * 119.99765 * 2 1 3 31 31 H 1.09001 * 109.46729 * 240.00101 * 2 1 3 32 32 H 0.97003 * 120.00128 * 180.02562 * 8 7 5 33 33 H 1.00900 * 110.99812 * 35.06057 * 13 3 2 34 34 H 1.09000 * 109.46857 * 184.95516 * 16 14 13 35 35 H 1.09009 * 109.46653 * 304.95026 * 16 14 13 36 36 H 1.08996 * 109.47204 * 64.95012 * 16 14 13 37 37 H 1.09002 * 109.46615 * 55.00156 * 17 14 13 38 38 H 1.08999 * 109.47230 * 174.99736 * 17 14 13 39 39 H 1.07996 * 119.99977 * 0.02562 * 19 18 17 40 40 H 1.07997 * 119.99816 * 180.02562 * 20 19 18 41 41 H 1.08004 * 119.99652 * 179.97438 * 21 20 19 42 42 H 1.07998 * 119.99704 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5898 1.9870 0.8301 5 6 3.5392 1.4453 0.1514 6 1 4.1588 1.8848 -0.6163 7 6 4.1202 0.8868 1.2701 8 7 3.3659 0.3511 2.2048 9 14 5.9788 0.8895 1.4576 10 1 6.4741 2.2895 1.4572 11 1 6.3482 0.2347 2.7382 12 1 6.5915 0.1474 0.3267 13 7 1.6744 2.0911 -1.2665 14 6 1.6854 3.5537 -1.1313 15 1 2.4437 3.8458 -0.4048 16 6 0.3122 4.0323 -0.6556 17 6 2.0057 4.1888 -2.4860 18 6 3.4068 3.8159 -2.8968 19 6 4.4576 4.6728 -2.6265 20 6 5.7427 4.3305 -3.0029 21 6 5.9773 3.1316 -3.6501 22 6 4.9268 2.2750 -3.9204 23 6 3.6421 2.6148 -3.5389 24 7 2.5180 1.6945 -3.8225 25 8 2.6714 0.4918 -3.7060 26 8 1.4397 2.1399 -4.1722 27 1 -0.3633 -1.0252 -0.0717 28 1 -0.3634 0.5747 -0.8519 29 1 -0.3633 0.4504 0.9238 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.7745 -0.0415 2.9920 33 1 0.7776 1.7649 -1.5941 34 1 0.2927 5.1220 -0.6396 35 1 -0.4563 3.6650 -1.3359 36 1 0.1219 3.6506 0.3475 37 1 1.2994 3.8266 -3.2330 38 1 1.9266 5.2730 -2.4068 39 1 4.2743 5.6092 -2.1206 40 1 6.5636 4.9997 -2.7914 41 1 6.9815 2.8644 -3.9446 42 1 5.1101 1.3386 -4.4264 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449243527.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:45 Heat of formation + Delta-G solvation = -1.404351 kcal Electronic energy + Delta-G solvation = -25288.432734 eV Core-core repulsion = 21849.789965 eV Total energy + Delta-G solvation = -3438.642769 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.89610 -40.32866 -38.68592 -37.25878 -35.77205 -33.82968 -32.75023 -32.53930 -30.38209 -28.13404 -27.95129 -26.66945 -24.71838 -23.52322 -22.90526 -21.56698 -21.45244 -19.67751 -19.37427 -18.38629 -18.06400 -17.17033 -16.95040 -16.32127 -15.92449 -15.79311 -15.44741 -15.02775 -14.74215 -14.43538 -14.34499 -13.74131 -13.55262 -13.37868 -13.16970 -13.12490 -12.90376 -12.81277 -12.58270 -12.53398 -12.28903 -12.08132 -12.02227 -11.97625 -11.83604 -11.55610 -11.39627 -11.27494 -10.98633 -10.42714 -10.27439 -9.87191 -9.00305 -8.05268 -6.15474 -0.66817 0.19408 0.47912 0.89908 1.35767 1.39317 1.45526 2.42044 2.52712 3.20221 3.51068 3.60487 3.72192 3.96895 4.13855 4.22210 4.24091 4.28958 4.45863 4.50555 4.53835 4.56520 4.65574 4.70194 4.83477 4.91858 4.96867 5.04319 5.10379 5.18245 5.22405 5.28341 5.30715 5.33748 5.39501 5.55604 5.62434 5.76350 5.87133 5.89667 6.37749 6.53693 6.91892 6.94424 6.98168 7.51958 8.98072 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.011683 B = 0.008749 C = 0.006639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.029991 B = 3199.449604 C = 4216.659900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.118 4.118 3 C 0.237 3.763 4 H -0.031 1.031 5 C -0.492 4.492 6 H 0.044 0.956 7 C 0.010 3.990 8 N -0.920 5.920 9 Si 0.946 3.054 10 H -0.268 1.268 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.687 5.687 14 C 0.090 3.910 15 H 0.056 0.944 16 C -0.165 4.165 17 C -0.098 4.098 18 C -0.013 4.013 19 C -0.124 4.124 20 C -0.073 4.073 21 C -0.124 4.124 22 C -0.087 4.087 23 C -0.028 4.028 24 N 0.064 4.936 25 O -0.208 6.208 26 O -0.163 6.163 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.038 0.962 30 H 0.066 0.934 31 H 0.026 0.974 32 H 0.258 0.742 33 H 0.323 0.677 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.035 0.965 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.165 0.835 40 H 0.174 0.826 41 H 0.170 0.830 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.261 11.179 -10.617 15.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.157 4.157 3 C 0.129 3.871 4 H -0.014 1.014 5 C -0.531 4.531 6 H 0.063 0.937 7 C -0.188 4.188 8 N -0.561 5.561 9 Si 0.773 3.227 10 H -0.193 1.193 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.319 5.319 14 C -0.020 4.020 15 H 0.074 0.926 16 C -0.223 4.223 17 C -0.135 4.135 18 C -0.015 4.015 19 C -0.142 4.142 20 C -0.090 4.090 21 C -0.142 4.142 22 C -0.106 4.106 23 C -0.110 4.110 24 N 0.582 4.418 25 O -0.417 6.417 26 O -0.384 6.384 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.067 0.933 33 H 0.142 0.858 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.054 0.946 37 H 0.117 0.883 38 H 0.129 0.871 39 H 0.183 0.817 40 H 0.191 0.809 41 H 0.187 0.813 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.489 11.445 -10.551 15.952 hybrid contribution -0.290 -0.853 1.038 1.375 sum 3.199 10.591 -9.513 14.591 Atomic orbital electron populations 1.21707 0.96616 1.00916 1.00031 1.21544 0.93979 0.99624 1.00557 1.18763 0.93882 0.90021 0.84398 1.01352 1.21242 0.92449 1.36172 1.03272 0.93733 1.25616 1.01723 0.95605 0.95862 1.69999 1.36012 1.40284 1.09803 0.85785 0.81562 0.78445 0.76939 1.19262 1.21298 1.20308 1.60696 1.34287 1.04723 1.32217 1.21435 0.96768 0.88423 0.95398 0.92576 1.22335 0.96951 1.02650 1.00405 1.21223 0.92026 1.02280 0.97981 1.19830 0.98838 0.90401 0.92388 1.21476 0.91611 1.00746 1.00399 1.21924 0.97706 0.96333 0.93082 1.21472 0.99224 0.93991 0.99491 1.21143 0.90001 1.00716 0.98729 1.20923 0.86811 0.92740 1.10568 1.43417 1.01811 1.01227 0.95329 1.94527 1.90048 0.99303 1.57832 1.94271 1.15091 1.80700 1.48375 0.92741 0.93112 0.94282 0.91543 0.95496 0.93317 0.85774 0.89974 0.91859 0.94590 0.88328 0.87145 0.81740 0.80903 0.81258 0.84336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.58 9.81 71.98 0.71 -4.88 16 2 C -0.12 -5.99 5.39 30.59 0.16 -5.82 16 3 C 0.24 12.04 1.87 44.17 0.08 12.13 16 4 H -0.03 -1.74 7.42 -2.39 -0.02 -1.76 16 5 C -0.49 -27.28 8.29 25.60 0.21 -27.07 16 6 H 0.04 2.51 7.81 -2.91 -0.02 2.49 16 7 C 0.01 0.54 5.29 84.66 0.45 0.99 16 8 N -0.92 -53.78 11.29 21.45 0.24 -53.53 16 9 Si 0.95 44.28 29.54 68.60 2.03 46.31 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 13 N -0.69 -29.10 3.51 -473.30 -1.66 -30.76 16 14 C 0.09 3.20 2.37 44.92 0.11 3.31 16 15 H 0.06 2.30 7.45 -2.39 -0.02 2.28 16 16 C -0.16 -4.94 9.18 71.98 0.66 -4.28 16 17 C -0.10 -2.82 4.67 29.85 0.14 -2.68 16 18 C -0.01 -0.40 5.02 -19.87 -0.10 -0.50 16 19 C -0.12 -2.95 9.68 22.27 0.22 -2.74 16 20 C -0.07 -1.48 10.05 22.27 0.22 -1.26 16 21 C -0.12 -2.79 10.05 22.27 0.22 -2.57 16 22 C -0.09 -2.61 9.68 22.27 0.22 -2.39 16 23 C -0.03 -0.98 6.07 36.37 0.22 -0.76 16 24 N 0.06 2.53 2.79 -46.46 -0.13 2.40 16 25 O -0.21 -9.29 18.98 18.88 0.36 -8.93 16 26 O -0.16 -6.19 15.68 18.88 0.30 -5.90 16 27 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 28 H 0.05 1.93 6.35 -2.39 -0.02 1.91 16 29 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 30 H 0.07 3.77 5.93 -2.39 -0.01 3.76 16 31 H 0.03 1.41 8.14 -2.39 -0.02 1.40 16 32 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 33 H 0.32 13.51 6.05 -89.69 -0.54 12.96 16 34 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.06 1.78 8.03 -2.38 -0.02 1.76 16 36 H 0.03 1.22 7.69 -2.39 -0.02 1.20 16 37 H 0.10 3.00 5.32 -2.39 -0.01 2.99 16 38 H 0.11 2.37 8.05 -2.39 -0.02 2.35 16 39 H 0.17 2.90 8.06 -2.91 -0.02 2.88 16 40 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 41 H 0.17 2.61 8.06 -2.91 -0.02 2.58 16 42 H 0.14 3.99 8.03 -2.91 -0.02 3.96 16 Total: -1.00 -67.94 343.71 5.13 -62.81 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: 0.48 Total: 26.13 kcal Atomic # 6 Polarization: -42.05 SS G_CDS: 3.52 Total: -38.53 kcal Atomic # 7 Polarization: -80.35 SS G_CDS: -1.55 Total: -81.89 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: 0.65 Total: -14.83 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -67.94 5.13 -62.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449243527.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.408 kcal (2) G-P(sol) polarization free energy of solvation -67.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds