Wall clock time and date at job start Tue Mar 31 2020 06:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47244 * 2 1 4 4 H 1.09004 * 109.46472 * 55.00532 * 3 2 1 5 5 N 1.46491 * 109.47178 * 295.00535 * 3 2 1 6 6 C 1.34778 * 120.00670 * 84.99610 * 5 3 2 7 7 O 1.21580 * 119.99451 * 0.02562 * 6 5 3 8 8 N 1.34772 * 120.00259 * 179.97438 * 6 5 3 9 9 C 1.39240 * 119.99826 * 175.71447 * 8 6 5 10 10 C 1.39484 * 119.83161 * 215.01737 * 9 8 6 11 11 C 1.36374 * 120.16570 * 179.75567 * 10 9 8 12 12 C 1.40861 * 119.82939 * 0.51988 * 11 10 9 13 13 C 1.41163 * 120.16389 * 179.71732 * 12 11 10 14 14 H 1.07995 * 119.99801 * 214.80725 * 13 12 11 15 15 C 1.39891 * 120.00044 * 34.79972 * 13 12 11 16 16 N 1.30882 * 119.99940 * 355.56329 * 15 13 12 17 17 Si 1.86801 * 120.00173 * 175.56006 * 15 13 12 18 18 H 1.48504 * 109.46784 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47135 * 120.00284 * 17 15 13 20 20 H 1.48503 * 109.47080 * 240.00489 * 17 15 13 21 21 C 1.40873 * 119.67537 * 359.73732 * 12 11 10 22 22 C 1.36367 * 119.82384 * 359.97438 * 21 12 11 23 23 C 1.52994 * 109.47067 * 174.99812 * 3 2 1 24 24 H 1.08999 * 109.47389 * 300.00193 * 23 3 2 25 25 C 1.52998 * 109.47188 * 180.02562 * 23 3 2 26 26 O 1.42901 * 109.47153 * 60.00170 * 23 3 2 27 27 H 1.08997 * 109.47244 * 60.00108 * 1 2 3 28 28 H 1.09002 * 109.46702 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46855 * 299.99577 * 1 2 3 30 30 H 1.09006 * 109.47098 * 239.99932 * 2 1 3 31 31 H 1.09003 * 109.47100 * 120.00787 * 2 1 3 32 32 H 0.97003 * 119.99555 * 264.99660 * 5 3 2 33 33 H 0.97002 * 120.00186 * 355.70634 * 8 6 5 34 34 H 1.08002 * 119.91275 * 0.02562 * 10 9 8 35 35 H 1.08011 * 120.08242 * 180.25444 * 11 10 9 36 36 H 0.97002 * 120.00005 * 179.97438 * 16 15 13 37 37 H 1.07992 * 120.08511 * 179.97438 * 21 12 11 38 38 H 1.08000 * 119.91653 * 179.97438 * 22 21 12 39 39 H 1.08994 * 109.47105 * 59.99873 * 25 23 3 40 40 H 1.08999 * 109.47466 * 180.02562 * 25 23 3 41 41 H 1.09008 * 109.46772 * 300.00287 * 25 23 3 42 42 H 0.96702 * 113.99801 * 59.99813 * 26 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9814 0.8419 5 7 1.6524 2.0975 -1.2517 6 6 0.4351 2.6644 -1.3669 7 8 -0.3412 2.6326 -0.4317 8 7 0.0788 3.2674 -2.5183 9 6 -1.2093 3.7744 -2.6690 10 6 -1.8350 3.7201 -3.9144 11 6 -3.0983 4.2100 -4.0686 12 6 -3.7671 4.7820 -2.9686 13 6 -5.0726 5.2967 -3.1217 14 1 -5.3779 6.1692 -2.5632 15 6 -5.9708 4.6767 -3.9968 16 7 -5.5751 3.6733 -4.7381 17 14 -7.7349 5.2810 -4.1074 18 1 -7.9279 6.4187 -3.1726 19 1 -8.0197 5.7260 -5.4952 20 1 -8.6597 4.1782 -3.7415 21 6 -3.1265 4.8382 -1.7152 22 6 -1.8654 4.3388 -1.5751 23 6 3.5648 1.4443 0.1258 24 1 3.8532 0.9569 1.0571 25 6 4.0748 2.8867 0.1264 26 8 4.1346 0.7376 -0.9779 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5140 0.8899 32 1 2.2719 2.1232 -1.9977 33 1 0.7196 3.3484 -3.2419 34 1 -1.3193 3.2849 -4.7577 35 1 -3.5832 4.1636 -5.0326 36 1 -6.1980 3.2431 -5.3446 37 1 -3.6329 5.2756 -0.8676 38 1 -1.3727 4.3814 -0.6150 39 1 3.6402 3.4254 0.9684 40 1 5.1612 2.8881 0.2156 41 1 3.7864 3.3745 -0.8048 42 1 3.9190 1.1165 -1.8410 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454347477.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:49 Heat of formation + Delta-G solvation = -64.757506 kcal Electronic energy + Delta-G solvation = -23453.270788 eV Core-core repulsion = 20011.880820 eV Total energy + Delta-G solvation = -3441.389968 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.36275 -38.55386 -37.20866 -34.96194 -34.19316 -33.07068 -31.88518 -31.02619 -29.53259 -28.69953 -26.56785 -24.79714 -22.22069 -22.01923 -21.09767 -20.48009 -20.18020 -18.29300 -17.27884 -17.24937 -16.12110 -15.84806 -15.41568 -15.14107 -14.60919 -14.60087 -14.02266 -13.82745 -13.58827 -13.02127 -12.94049 -12.66144 -12.52432 -12.13583 -12.09735 -11.78595 -11.64421 -11.41201 -11.34311 -11.13858 -11.10545 -10.97348 -10.70331 -10.65629 -10.22822 -10.02591 -9.51084 -9.42899 -9.22984 -8.85964 -8.83207 -7.51213 -6.80624 -6.58469 -4.30736 2.67783 2.95421 3.10907 3.11291 3.16499 3.18989 3.70506 4.00682 4.00885 4.37663 4.61379 4.70016 4.74187 4.88232 5.18793 5.22642 5.39487 5.55300 5.63045 5.67391 5.77748 5.85443 5.97228 6.13743 6.21251 6.30977 6.46261 6.58252 6.68588 6.80449 6.82905 7.07389 7.17739 7.25368 7.29366 7.42120 7.68173 7.88517 7.99691 8.12752 8.33970 8.47403 8.67356 8.95540 8.96706 9.11383 10.32777 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.034539 B = 0.003151 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.479712 B = 8885.185797 C = 9025.064455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.127 4.127 3 C 0.133 3.867 4 H 0.096 0.904 5 N -0.746 5.746 6 C 0.696 3.304 7 O -0.569 6.569 8 N -0.668 5.668 9 C 0.024 3.976 10 C -0.124 4.124 11 C -0.140 4.140 12 C 0.098 3.902 13 C -0.462 4.462 14 H 0.075 0.925 15 C 0.069 3.931 16 N -0.813 5.813 17 Si 0.914 3.086 18 H -0.262 1.262 19 H -0.275 1.275 20 H -0.275 1.275 21 C -0.204 4.204 22 C -0.086 4.086 23 C 0.096 3.904 24 H 0.111 0.889 25 C -0.185 4.185 26 O -0.558 6.558 27 H 0.063 0.937 28 H 0.040 0.960 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.385 0.615 33 H 0.390 0.610 34 H 0.089 0.911 35 H 0.131 0.869 36 H 0.276 0.724 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.878 -3.948 4.026 16.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.166 4.166 3 C 0.027 3.973 4 H 0.114 0.886 5 N -0.404 5.404 6 C 0.397 3.603 7 O -0.445 6.445 8 N -0.314 5.314 9 C -0.069 4.069 10 C -0.144 4.144 11 C -0.160 4.160 12 C 0.095 3.905 13 C -0.493 4.493 14 H 0.093 0.907 15 C -0.145 4.145 16 N -0.441 5.441 17 Si 0.739 3.261 18 H -0.186 1.186 19 H -0.201 1.201 20 H -0.200 1.200 21 C -0.224 4.224 22 C -0.106 4.106 23 C 0.036 3.964 24 H 0.128 0.872 25 C -0.242 4.242 26 O -0.363 6.363 27 H 0.082 0.918 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.218 0.782 33 H 0.223 0.777 34 H 0.108 0.892 35 H 0.149 0.851 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.127 0.873 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 15.295 -4.524 5.222 16.783 hybrid contribution -0.493 0.464 -1.242 1.415 sum 14.802 -4.059 3.979 15.856 Atomic orbital electron populations 1.21798 0.94444 1.00218 1.03726 1.21861 0.97176 0.95503 1.02042 1.21564 0.94156 0.93883 0.87691 0.88619 1.45100 1.16495 1.62211 1.16638 1.15943 0.81766 0.78483 0.84062 1.90923 1.50938 1.64193 1.38469 1.42131 1.13630 1.59882 1.15766 1.17059 0.85223 1.08734 0.95839 1.20292 0.96213 1.03336 0.94602 1.21170 0.92036 1.02660 1.00166 1.17716 0.92404 0.90277 0.90073 1.19518 0.96305 1.12272 1.21208 0.90652 1.25862 1.01102 0.94021 0.93543 1.69776 1.36328 1.18520 1.19483 0.86167 0.81686 0.79524 0.78695 1.18623 1.20051 1.20035 1.20805 0.96246 1.08533 0.96842 1.20410 0.95588 0.97603 0.97012 1.22301 0.90586 0.92556 0.90920 0.87163 1.22474 1.01777 0.96660 1.03311 1.86617 1.76045 1.56881 1.16719 0.91845 0.94079 0.92264 0.91681 0.91703 0.78155 0.77717 0.89245 0.85096 0.91291 0.88710 0.87338 0.91258 0.91779 0.92048 0.78260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 8.51 37.16 0.32 -1.80 16 2 C -0.13 -1.44 5.39 -26.73 -0.14 -1.59 16 3 C 0.13 1.41 2.09 -67.94 -0.14 1.27 16 4 H 0.10 1.19 7.58 -51.93 -0.39 0.80 16 5 N -0.75 -8.39 4.31 -58.69 -0.25 -8.64 16 6 C 0.70 11.48 6.96 -86.92 -0.61 10.87 16 7 O -0.57 -11.64 10.89 5.29 0.06 -11.58 16 8 N -0.67 -11.25 5.31 -14.10 -0.07 -11.33 16 9 C 0.02 0.53 6.31 -83.57 -0.53 0.00 16 10 C -0.12 -2.80 9.90 -39.79 -0.39 -3.20 16 11 C -0.14 -3.60 8.61 -39.26 -0.34 -3.94 16 12 C 0.10 2.63 5.55 -106.80 -0.59 2.04 16 13 C -0.46 -12.41 9.02 -37.85 -0.34 -12.75 16 14 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 15 C 0.07 1.77 5.42 -17.34 -0.09 1.67 16 16 N -0.81 -21.31 10.60 55.54 0.59 -20.72 16 17 Si 0.91 19.17 29.56 -169.99 -5.03 14.15 16 18 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 19 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 20 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 21 C -0.20 -5.18 9.74 -39.26 -0.38 -5.57 16 22 C -0.09 -2.05 8.61 -39.79 -0.34 -2.39 16 23 C 0.10 0.78 3.41 -26.74 -0.09 0.69 16 24 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 25 C -0.18 -1.38 9.38 37.16 0.35 -1.03 16 26 O -0.56 -4.70 12.76 -35.23 -0.45 -5.15 16 27 H 0.06 1.12 5.65 -51.93 -0.29 0.83 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.94 7.84 -51.93 -0.41 0.53 16 30 H 0.06 0.73 7.84 -51.93 -0.41 0.33 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.38 3.09 6.96 -40.82 -0.28 2.81 16 33 H 0.39 5.07 8.83 -40.82 -0.36 4.71 16 34 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 35 H 0.13 3.48 6.13 -52.48 -0.32 3.16 16 36 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 37 H 0.09 2.30 8.06 -52.49 -0.42 1.87 16 38 H 0.11 2.56 6.22 -52.49 -0.33 2.23 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.46 7.45 -51.92 -0.39 0.07 16 42 H 0.37 2.11 7.51 45.56 0.34 2.45 16 LS Contribution 338.63 15.07 5.10 5.10 Total: -1.00 -30.92 338.63 -8.73 -39.65 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -5.34 Total: 14.26 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -3.33 Total: -15.74 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.26 Total: -40.69 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.39 Total: -16.74 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.15 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.92 -8.73 -39.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454347477.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.108 kcal (2) G-P(sol) polarization free energy of solvation -30.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds