Wall clock time and date at job start Tue Mar 31 2020 06:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47244 * 2 1 4 4 H 1.09004 * 109.46472 * 55.00532 * 3 2 1 5 5 N 1.46491 * 109.47178 * 295.00535 * 3 2 1 6 6 C 1.34778 * 120.00670 * 84.99610 * 5 3 2 7 7 O 1.21580 * 119.99451 * 0.02562 * 6 5 3 8 8 N 1.34772 * 120.00259 * 179.97438 * 6 5 3 9 9 C 1.39240 * 119.99826 * 175.71447 * 8 6 5 10 10 C 1.39484 * 119.83161 * 215.01737 * 9 8 6 11 11 C 1.36374 * 120.16570 * 179.75567 * 10 9 8 12 12 C 1.40861 * 119.82939 * 0.51988 * 11 10 9 13 13 C 1.41163 * 120.16389 * 179.71732 * 12 11 10 14 14 H 1.07995 * 119.99801 * 214.80725 * 13 12 11 15 15 C 1.39891 * 120.00044 * 34.79972 * 13 12 11 16 16 N 1.30882 * 119.99940 * 355.56329 * 15 13 12 17 17 Si 1.86801 * 120.00173 * 175.56006 * 15 13 12 18 18 H 1.48504 * 109.46784 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47135 * 120.00284 * 17 15 13 20 20 H 1.48503 * 109.47080 * 240.00489 * 17 15 13 21 21 C 1.40873 * 119.67537 * 359.73732 * 12 11 10 22 22 C 1.36367 * 119.82384 * 359.97438 * 21 12 11 23 23 C 1.52994 * 109.47067 * 174.99812 * 3 2 1 24 24 H 1.08999 * 109.47389 * 300.00193 * 23 3 2 25 25 C 1.52998 * 109.47188 * 180.02562 * 23 3 2 26 26 O 1.42901 * 109.47153 * 60.00170 * 23 3 2 27 27 H 1.08997 * 109.47244 * 60.00108 * 1 2 3 28 28 H 1.09002 * 109.46702 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46855 * 299.99577 * 1 2 3 30 30 H 1.09006 * 109.47098 * 239.99932 * 2 1 3 31 31 H 1.09003 * 109.47100 * 120.00787 * 2 1 3 32 32 H 0.97003 * 119.99555 * 264.99660 * 5 3 2 33 33 H 0.97002 * 120.00186 * 355.70634 * 8 6 5 34 34 H 1.08002 * 119.91275 * 0.02562 * 10 9 8 35 35 H 1.08011 * 120.08242 * 180.25444 * 11 10 9 36 36 H 0.97002 * 120.00005 * 179.97438 * 16 15 13 37 37 H 1.07992 * 120.08511 * 179.97438 * 21 12 11 38 38 H 1.08000 * 119.91653 * 179.97438 * 22 21 12 39 39 H 1.08994 * 109.47105 * 59.99873 * 25 23 3 40 40 H 1.08999 * 109.47466 * 180.02562 * 25 23 3 41 41 H 1.09008 * 109.46772 * 300.00287 * 25 23 3 42 42 H 0.96702 * 113.99801 * 59.99813 * 26 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9814 0.8419 5 7 1.6524 2.0975 -1.2517 6 6 0.4351 2.6644 -1.3669 7 8 -0.3412 2.6326 -0.4317 8 7 0.0788 3.2674 -2.5183 9 6 -1.2093 3.7744 -2.6690 10 6 -1.8350 3.7201 -3.9144 11 6 -3.0983 4.2100 -4.0686 12 6 -3.7671 4.7820 -2.9686 13 6 -5.0726 5.2967 -3.1217 14 1 -5.3779 6.1692 -2.5632 15 6 -5.9708 4.6767 -3.9968 16 7 -5.5751 3.6733 -4.7381 17 14 -7.7349 5.2810 -4.1074 18 1 -7.9279 6.4187 -3.1726 19 1 -8.0197 5.7260 -5.4952 20 1 -8.6597 4.1782 -3.7415 21 6 -3.1265 4.8382 -1.7152 22 6 -1.8654 4.3388 -1.5751 23 6 3.5648 1.4443 0.1258 24 1 3.8532 0.9569 1.0571 25 6 4.0748 2.8867 0.1264 26 8 4.1346 0.7376 -0.9779 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5140 0.8899 32 1 2.2719 2.1232 -1.9977 33 1 0.7196 3.3484 -3.2419 34 1 -1.3193 3.2849 -4.7577 35 1 -3.5832 4.1636 -5.0326 36 1 -6.1980 3.2431 -5.3446 37 1 -3.6329 5.2756 -0.8676 38 1 -1.3727 4.3814 -0.6150 39 1 3.6402 3.4254 0.9684 40 1 5.1612 2.8881 0.2156 41 1 3.7864 3.3745 -0.8048 42 1 3.9190 1.1165 -1.8410 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454347477.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:48 Heat of formation + Delta-G solvation = -86.408415 kcal Electronic energy + Delta-G solvation = -23454.209642 eV Core-core repulsion = 20011.880820 eV Total energy + Delta-G solvation = -3442.328822 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.63746 -39.79524 -38.68602 -36.28257 -35.53975 -34.77509 -33.12967 -31.77873 -31.42136 -30.49065 -27.62492 -26.53304 -23.63483 -22.97766 -22.83201 -21.87646 -21.44323 -19.63147 -19.15410 -18.44364 -17.41933 -16.97764 -16.80617 -16.60869 -15.73260 -15.52223 -15.49158 -15.18776 -14.95492 -14.49678 -14.40676 -13.96825 -13.88841 -13.54996 -13.39885 -13.21339 -12.91526 -12.82614 -12.75123 -12.55476 -12.50877 -12.35985 -11.94284 -11.77366 -11.64364 -11.36153 -11.19471 -10.99283 -10.94744 -10.56752 -9.96351 -9.42949 -8.65207 -8.47826 -6.30085 0.87713 1.17695 1.39839 1.47369 1.55004 1.76437 2.24625 2.29860 2.83891 3.32351 3.42734 3.66485 3.71676 3.96516 4.17541 4.32941 4.37024 4.41845 4.51125 4.58149 4.71797 4.88287 4.94575 4.96350 5.04223 5.07367 5.16282 5.18397 5.21215 5.27528 5.35711 5.46302 5.50931 5.60157 5.72271 5.85106 6.06951 6.14625 6.28100 6.43490 6.71604 6.74726 6.99754 7.04414 7.19594 7.73394 8.44798 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.034539 B = 0.003151 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.479712 B = 8885.185797 C = 9025.064455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C 0.133 3.867 4 H 0.077 0.923 5 N -0.722 5.722 6 C 0.696 3.304 7 O -0.609 6.609 8 N -0.662 5.662 9 C 0.046 3.954 10 C -0.122 4.122 11 C -0.157 4.157 12 C 0.065 3.935 13 C -0.500 4.500 14 H 0.070 0.930 15 C 0.027 3.973 16 N -0.843 5.843 17 Si 0.987 3.013 18 H -0.261 1.261 19 H -0.263 1.263 20 H -0.270 1.270 21 C -0.219 4.219 22 C -0.096 4.096 23 C 0.110 3.890 24 H 0.123 0.877 25 C -0.182 4.182 26 O -0.565 6.565 27 H 0.030 0.970 28 H 0.048 0.952 29 H 0.039 0.961 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.406 0.594 33 H 0.413 0.587 34 H 0.123 0.877 35 H 0.118 0.882 36 H 0.283 0.717 37 H 0.093 0.907 38 H 0.109 0.891 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.910 -4.809 3.644 18.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.159 4.159 3 C 0.028 3.972 4 H 0.095 0.905 5 N -0.380 5.380 6 C 0.397 3.603 7 O -0.489 6.489 8 N -0.310 5.310 9 C -0.048 4.048 10 C -0.143 4.143 11 C -0.178 4.178 12 C 0.063 3.937 13 C -0.531 4.531 14 H 0.088 0.912 15 C -0.184 4.184 16 N -0.471 5.471 17 Si 0.808 3.192 18 H -0.185 1.185 19 H -0.187 1.187 20 H -0.195 1.195 21 C -0.240 4.240 22 C -0.117 4.117 23 C 0.050 3.950 24 H 0.140 0.860 25 C -0.240 4.240 26 O -0.372 6.372 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.243 0.757 33 H 0.249 0.751 34 H 0.141 0.859 35 H 0.135 0.865 36 H 0.094 0.906 37 H 0.111 0.889 38 H 0.127 0.873 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 17.422 -5.399 4.809 18.863 hybrid contribution -0.935 0.645 -1.067 1.558 sum 16.487 -4.755 3.742 17.562 Atomic orbital electron populations 1.21717 0.97069 0.99840 1.01103 1.21828 0.94532 0.96179 1.03392 1.21672 0.96121 0.93012 0.86414 0.90480 1.44832 1.14848 1.60540 1.17779 1.16084 0.82778 0.78368 0.83117 1.90911 1.52633 1.65509 1.39815 1.41901 1.12324 1.59807 1.16925 1.17055 0.86725 1.06253 0.94760 1.20530 0.95311 1.02440 0.96000 1.21145 0.93373 1.03880 0.99354 1.18011 0.93112 0.91685 0.90938 1.19730 0.97272 1.13143 1.22921 0.91151 1.26704 1.05141 0.93872 0.92684 1.69838 1.37949 1.19364 1.19988 0.85079 0.76039 0.78922 0.79119 1.18483 1.18716 1.19523 1.20922 0.97169 1.09246 0.96614 1.20513 0.95348 0.98002 0.97812 1.22194 0.88064 0.93192 0.91533 0.85982 1.22452 1.02385 0.96005 1.03148 1.86614 1.75904 1.57199 1.17457 0.95044 0.93329 0.94221 0.90885 0.89701 0.75747 0.75065 0.85890 0.86463 0.90605 0.88891 0.87297 0.91806 0.90752 0.91959 0.76853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.03 8.51 71.98 0.61 -3.42 16 2 C -0.12 -2.47 5.39 30.59 0.16 -2.31 16 3 C 0.13 2.54 2.09 44.99 0.09 2.63 16 4 H 0.08 1.84 7.58 -2.39 -0.02 1.82 16 5 N -0.72 -14.52 4.31 -457.85 -1.97 -16.50 16 6 C 0.70 22.00 6.96 179.06 1.25 23.24 16 7 O -0.61 -24.98 10.89 -3.97 -0.04 -25.02 16 8 N -0.66 -21.02 5.31 -316.79 -1.68 -22.70 16 9 C 0.05 1.99 6.31 38.57 0.24 2.24 16 10 C -0.12 -5.46 9.90 22.14 0.22 -5.24 16 11 C -0.16 -8.27 8.61 22.48 0.19 -8.07 16 12 C 0.06 3.62 5.55 -21.27 -0.12 3.50 16 13 C -0.50 -27.93 9.02 23.39 0.21 -27.71 16 14 H 0.07 3.83 7.85 -2.91 -0.02 3.80 16 15 C 0.03 1.43 5.42 85.23 0.46 1.89 16 16 N -0.84 -45.11 10.60 21.82 0.23 -44.88 16 17 Si 0.99 39.84 29.56 68.60 2.03 41.87 16 18 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 19 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 20 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 21 C -0.22 -11.58 9.74 22.48 0.22 -11.36 16 22 C -0.10 -4.66 8.61 22.13 0.19 -4.47 16 23 C 0.11 1.43 3.41 30.59 0.10 1.53 16 24 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 25 C -0.18 -2.19 9.38 71.98 0.68 -1.52 16 26 O -0.56 -7.38 12.76 -148.98 -1.90 -9.28 16 27 H 0.03 1.09 5.65 -2.39 -0.01 1.08 16 28 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.04 1.27 7.84 -2.39 -0.02 1.25 16 30 H 0.07 1.42 7.84 -2.38 -0.02 1.40 16 31 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.41 5.08 6.96 -92.71 -0.65 4.44 16 33 H 0.41 9.43 8.83 -92.71 -0.82 8.61 16 34 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 35 H 0.12 6.43 6.13 -2.90 -0.02 6.41 16 36 H 0.28 13.75 8.30 -92.71 -0.77 12.98 16 37 H 0.09 4.75 8.06 -2.91 -0.02 4.73 16 38 H 0.11 5.23 6.22 -2.91 -0.02 5.22 16 39 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.06 0.73 7.45 -2.38 -0.02 0.71 16 42 H 0.38 2.79 7.51 -74.06 -0.56 2.24 16 Total: -1.00 -69.71 338.63 0.22 -69.49 By element: Atomic # 1 Polarization: 37.04 SS G_CDS: -0.96 Total: 36.08 kcal Atomic # 6 Polarization: -33.58 SS G_CDS: 4.52 Total: -29.06 kcal Atomic # 7 Polarization: -80.65 SS G_CDS: -3.42 Total: -84.07 kcal Atomic # 8 Polarization: -32.36 SS G_CDS: -1.94 Total: -34.30 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.87 kcal Total: -69.71 0.22 -69.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454347477.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.918 kcal (2) G-P(sol) polarization free energy of solvation -69.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds