Wall clock time and date at job start Tue Mar 31 2020 06:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46820 * 2 1 4 4 H 1.08990 * 109.47214 * 55.00211 * 3 2 1 5 5 N 1.46502 * 109.46732 * 294.99612 * 3 2 1 6 6 C 1.34770 * 119.99703 * 85.00815 * 5 3 2 7 7 O 1.21581 * 120.00331 * 359.97438 * 6 5 3 8 8 N 1.34779 * 120.00257 * 179.97438 * 6 5 3 9 9 C 1.39244 * 120.00164 * 185.14667 * 8 6 5 10 10 C 1.39482 * 119.82667 * 214.19777 * 9 8 6 11 11 C 1.36377 * 120.16146 * 179.71548 * 10 9 8 12 12 C 1.40863 * 119.82893 * 0.57666 * 11 10 9 13 13 C 1.41162 * 120.16425 * 179.67682 * 12 11 10 14 14 H 1.07995 * 119.99845 * 205.37394 * 13 12 11 15 15 C 1.39890 * 119.99936 * 25.36644 * 13 12 11 16 16 N 1.30885 * 120.00047 * 16.82197 * 15 13 12 17 17 Si 1.86807 * 120.00249 * 196.82179 * 15 13 12 18 18 H 1.48502 * 109.46961 * 59.99910 * 17 15 13 19 19 H 1.48491 * 109.47185 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46617 * 300.00250 * 17 15 13 21 21 C 1.40871 * 119.67722 * 359.69797 * 12 11 10 22 22 C 1.36379 * 119.81999 * 359.97438 * 21 12 11 23 23 C 1.53004 * 109.46693 * 175.00307 * 3 2 1 24 24 H 1.08996 * 109.46968 * 174.99776 * 23 3 2 25 25 C 1.53003 * 109.46747 * 294.99599 * 23 3 2 26 26 O 1.42894 * 109.47404 * 54.99633 * 23 3 2 27 27 H 1.09004 * 109.47115 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47258 * 300.00200 * 1 2 3 29 29 H 1.08997 * 109.47446 * 60.00164 * 1 2 3 30 30 H 1.09001 * 109.46895 * 240.00184 * 2 1 3 31 31 H 1.09003 * 109.47060 * 119.99634 * 2 1 3 32 32 H 0.96997 * 119.99922 * 264.99867 * 5 3 2 33 33 H 0.96996 * 119.99808 * 5.14374 * 8 6 5 34 34 H 1.07999 * 119.92089 * 359.97438 * 10 9 8 35 35 H 1.08006 * 120.08675 * 180.25185 * 11 10 9 36 36 H 0.96998 * 119.99700 * 180.02562 * 16 15 13 37 37 H 1.07994 * 120.09014 * 179.97438 * 21 12 11 38 38 H 1.08006 * 119.90747 * 179.97438 * 22 21 12 39 39 H 1.08996 * 109.47242 * 60.00345 * 25 23 3 40 40 H 1.09004 * 109.46726 * 180.02562 * 25 23 3 41 41 H 1.08996 * 109.47513 * 299.99998 * 25 23 3 42 42 H 0.96705 * 114.00105 * 300.00046 * 26 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6524 2.0975 -1.2519 6 6 0.4351 2.6644 -1.3670 7 8 -0.3415 2.6319 -0.4321 8 7 0.0787 3.2673 -2.5185 9 6 -1.1346 3.9455 -2.6028 10 6 -1.8467 3.9469 -3.8021 11 6 -3.0384 4.6040 -3.8906 12 6 -3.5438 5.2925 -2.7704 13 6 -4.7733 5.9808 -2.8561 14 1 -4.9729 6.8135 -2.1981 15 6 -5.7329 5.5842 -3.7935 16 7 -5.6507 4.4050 -4.3555 17 14 -7.1319 6.7376 -4.2432 18 1 -6.5759 7.9933 -4.8083 19 1 -8.0066 6.0856 -5.2506 20 1 -7.9255 7.0506 -3.0276 21 6 -2.8160 5.2914 -1.5643 22 6 -1.6289 4.6241 -1.4891 23 6 3.5648 1.4444 0.1257 24 1 3.9355 2.4655 0.0365 25 6 3.9649 0.8736 1.4877 26 8 4.1293 0.6405 -0.9121 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.2719 2.1231 -1.9978 33 1 0.6673 3.2288 -3.2885 34 1 -1.4555 3.4228 -4.6615 35 1 -3.5909 4.6009 -4.8187 36 1 -6.3159 4.1303 -5.0057 37 1 -3.1969 5.8174 -0.7015 38 1 -1.0695 4.6226 -0.5652 39 1 3.5942 -0.1475 1.5768 40 1 5.0512 0.8753 1.5774 41 1 3.5344 1.4869 2.2793 42 1 3.8426 -0.2830 -0.8943 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454347482.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:55 Heat of formation + Delta-G solvation = -67.574248 kcal Electronic energy + Delta-G solvation = -23303.467504 eV Core-core repulsion = 19861.955393 eV Total energy + Delta-G solvation = -3441.512111 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.23683 -38.58220 -37.21838 -34.92113 -34.14997 -33.07903 -31.93582 -30.95612 -29.50650 -28.77324 -26.35887 -24.62366 -23.17293 -21.77397 -20.89012 -20.37797 -19.96211 -17.98160 -17.24840 -17.22541 -16.20434 -15.93240 -15.46887 -15.19404 -14.92567 -14.45038 -13.96110 -13.79586 -13.45315 -12.99768 -12.84766 -12.66098 -12.46108 -12.19502 -12.08784 -12.01983 -11.78623 -11.43702 -11.26073 -11.07206 -11.03077 -10.88795 -10.75769 -10.67349 -10.31181 -9.99161 -9.52913 -9.45088 -9.14886 -8.84832 -8.76254 -7.48611 -6.90330 -6.68517 -4.24583 2.71964 3.04713 3.08723 3.11668 3.14516 3.21542 3.77350 3.96512 4.08367 4.45747 4.57678 4.69008 4.73923 4.87881 5.04200 5.13598 5.31449 5.47892 5.60427 5.65644 5.73970 5.79240 5.97910 6.05312 6.22972 6.25191 6.46935 6.63398 6.70423 6.84421 6.89319 7.09442 7.18378 7.30095 7.33697 7.44085 7.66259 7.93624 8.03325 8.10414 8.33709 8.56964 8.65252 8.93698 8.97885 9.19424 10.23186 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.040531 B = 0.002966 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.671003 B = 9438.619879 C = 9472.684140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.140 4.140 3 C 0.134 3.866 4 H 0.095 0.905 5 N -0.744 5.744 6 C 0.694 3.306 7 O -0.574 6.574 8 N -0.668 5.668 9 C 0.016 3.984 10 C -0.117 4.117 11 C -0.152 4.152 12 C 0.104 3.896 13 C -0.460 4.460 14 H 0.077 0.923 15 C 0.074 3.926 16 N -0.795 5.795 17 Si 0.908 3.092 18 H -0.264 1.264 19 H -0.279 1.279 20 H -0.266 1.266 21 C -0.214 4.214 22 C -0.077 4.077 23 C 0.095 3.905 24 H 0.104 0.896 25 C -0.184 4.184 26 O -0.562 6.562 27 H 0.040 0.960 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.395 0.605 33 H 0.390 0.610 34 H 0.089 0.911 35 H 0.121 0.879 36 H 0.280 0.720 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.495 -7.482 4.587 17.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.178 4.178 3 C 0.028 3.972 4 H 0.113 0.887 5 N -0.401 5.401 6 C 0.395 3.605 7 O -0.451 6.451 8 N -0.314 5.314 9 C -0.077 4.077 10 C -0.137 4.137 11 C -0.172 4.172 12 C 0.101 3.899 13 C -0.490 4.490 14 H 0.095 0.905 15 C -0.143 4.143 16 N -0.421 5.421 17 Si 0.733 3.267 18 H -0.189 1.189 19 H -0.204 1.204 20 H -0.191 1.191 21 C -0.235 4.235 22 C -0.097 4.097 23 C 0.035 3.965 24 H 0.122 0.878 25 C -0.242 4.242 26 O -0.369 6.369 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.229 0.771 33 H 0.223 0.777 34 H 0.107 0.893 35 H 0.139 0.861 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.119 0.881 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 14.931 -7.099 5.156 17.318 hybrid contribution -0.455 -0.216 -0.787 0.935 sum 14.476 -7.314 4.369 16.797 Atomic orbital electron populations 1.21754 0.93960 1.00229 1.04017 1.22034 0.98255 0.96135 1.01411 1.21497 0.94116 0.93644 0.87988 0.88710 1.45073 1.16212 1.61990 1.16836 1.15998 0.81943 0.78459 0.84148 1.90925 1.51121 1.64121 1.38896 1.42143 1.21126 1.55408 1.12696 1.16951 0.88955 1.04997 0.96814 1.20204 0.95940 1.02221 0.95349 1.20876 0.94377 1.02521 0.99407 1.17638 0.92059 0.90112 0.90081 1.19504 0.99117 1.14212 1.16131 0.90503 1.25905 0.99176 0.94690 0.94513 1.69845 1.33444 1.16891 1.21928 0.86368 0.80223 0.81083 0.79030 1.18870 1.20410 1.19051 1.20644 0.97977 1.07549 0.97280 1.20237 0.96739 0.96269 0.96435 1.22231 0.91122 0.95866 0.87251 0.87790 1.22500 1.02446 1.02077 0.97192 1.86569 1.72299 1.25032 1.52951 0.94045 0.92084 0.91687 0.92050 0.91340 0.77112 0.77714 0.89310 0.86149 0.90906 0.88826 0.88066 0.91695 0.91483 0.91124 0.77710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 8.51 37.16 0.32 -1.68 16 2 C -0.14 -1.41 4.89 -26.73 -0.13 -1.54 16 3 C 0.13 1.45 2.13 -67.92 -0.14 1.30 16 4 H 0.09 1.22 7.58 -51.93 -0.39 0.82 16 5 N -0.74 -9.42 5.02 -58.67 -0.29 -9.71 16 6 C 0.69 12.17 6.85 -86.92 -0.60 11.57 16 7 O -0.57 -12.22 11.20 5.29 0.06 -12.16 16 8 N -0.67 -11.99 5.31 -14.10 -0.07 -12.07 16 9 C 0.02 0.35 6.27 -83.57 -0.52 -0.17 16 10 C -0.12 -2.71 9.90 -39.79 -0.39 -3.10 16 11 C -0.15 -3.95 8.63 -39.26 -0.34 -4.29 16 12 C 0.10 2.82 5.57 -106.80 -0.59 2.22 16 13 C -0.46 -12.38 9.04 -37.85 -0.34 -12.72 16 14 H 0.08 1.99 7.90 -52.49 -0.41 1.57 16 15 C 0.07 1.89 5.15 -17.34 -0.09 1.80 16 16 N -0.80 -20.80 10.95 55.54 0.61 -20.20 16 17 Si 0.91 18.85 29.59 -169.99 -5.03 13.82 16 18 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 19 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 20 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 21 C -0.21 -5.53 9.74 -39.26 -0.38 -5.91 16 22 C -0.08 -1.87 8.57 -39.79 -0.34 -2.21 16 23 C 0.09 0.79 3.49 -26.73 -0.09 0.69 16 24 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 25 C -0.18 -1.21 9.30 37.16 0.35 -0.87 16 26 O -0.56 -4.73 12.98 -35.23 -0.46 -5.19 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.94 7.84 -51.93 -0.41 0.54 16 29 H 0.06 1.13 5.64 -51.93 -0.29 0.84 16 30 H 0.06 0.55 7.00 -51.93 -0.36 0.19 16 31 H 0.07 0.55 6.34 -51.93 -0.33 0.22 16 32 H 0.40 4.20 8.40 -40.82 -0.34 3.86 16 33 H 0.39 5.61 8.83 -40.82 -0.36 5.25 16 34 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.12 3.21 6.18 -52.48 -0.32 2.88 16 36 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 37 H 0.09 2.30 8.06 -52.49 -0.42 1.88 16 38 H 0.10 2.44 6.47 -52.48 -0.34 2.10 16 39 H 0.06 0.38 6.46 -51.93 -0.34 0.04 16 40 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.37 2.20 7.31 45.56 0.33 2.53 16 LS Contribution 337.32 15.07 5.08 5.08 Total: -1.00 -30.91 337.32 -8.66 -39.57 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -5.24 Total: 15.75 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: -3.31 Total: -14.90 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: 0.24 Total: -41.97 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.40 Total: -17.35 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.91 -8.66 -39.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454347482.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.006 kcal (2) G-P(sol) polarization free energy of solvation -30.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds