Wall clock time and date at job start Tue Mar 31 2020 06:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46820 * 2 1 4 4 H 1.08990 * 109.47214 * 55.00211 * 3 2 1 5 5 N 1.46502 * 109.46732 * 294.99612 * 3 2 1 6 6 C 1.34770 * 119.99703 * 85.00815 * 5 3 2 7 7 O 1.21581 * 120.00331 * 359.97438 * 6 5 3 8 8 N 1.34779 * 120.00257 * 179.97438 * 6 5 3 9 9 C 1.39244 * 120.00164 * 185.14667 * 8 6 5 10 10 C 1.39482 * 119.82667 * 214.19777 * 9 8 6 11 11 C 1.36377 * 120.16146 * 179.71548 * 10 9 8 12 12 C 1.40863 * 119.82893 * 0.57666 * 11 10 9 13 13 C 1.41162 * 120.16425 * 179.67682 * 12 11 10 14 14 H 1.07995 * 119.99845 * 205.37394 * 13 12 11 15 15 C 1.39890 * 119.99936 * 25.36644 * 13 12 11 16 16 N 1.30885 * 120.00047 * 16.82197 * 15 13 12 17 17 Si 1.86807 * 120.00249 * 196.82179 * 15 13 12 18 18 H 1.48502 * 109.46961 * 59.99910 * 17 15 13 19 19 H 1.48491 * 109.47185 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46617 * 300.00250 * 17 15 13 21 21 C 1.40871 * 119.67722 * 359.69797 * 12 11 10 22 22 C 1.36379 * 119.81999 * 359.97438 * 21 12 11 23 23 C 1.53004 * 109.46693 * 175.00307 * 3 2 1 24 24 H 1.08996 * 109.46968 * 174.99776 * 23 3 2 25 25 C 1.53003 * 109.46747 * 294.99599 * 23 3 2 26 26 O 1.42894 * 109.47404 * 54.99633 * 23 3 2 27 27 H 1.09004 * 109.47115 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47258 * 300.00200 * 1 2 3 29 29 H 1.08997 * 109.47446 * 60.00164 * 1 2 3 30 30 H 1.09001 * 109.46895 * 240.00184 * 2 1 3 31 31 H 1.09003 * 109.47060 * 119.99634 * 2 1 3 32 32 H 0.96997 * 119.99922 * 264.99867 * 5 3 2 33 33 H 0.96996 * 119.99808 * 5.14374 * 8 6 5 34 34 H 1.07999 * 119.92089 * 359.97438 * 10 9 8 35 35 H 1.08006 * 120.08675 * 180.25185 * 11 10 9 36 36 H 0.96998 * 119.99700 * 180.02562 * 16 15 13 37 37 H 1.07994 * 120.09014 * 179.97438 * 21 12 11 38 38 H 1.08006 * 119.90747 * 179.97438 * 22 21 12 39 39 H 1.08996 * 109.47242 * 60.00345 * 25 23 3 40 40 H 1.09004 * 109.46726 * 180.02562 * 25 23 3 41 41 H 1.08996 * 109.47513 * 299.99998 * 25 23 3 42 42 H 0.96705 * 114.00105 * 300.00046 * 26 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6524 2.0975 -1.2519 6 6 0.4351 2.6644 -1.3670 7 8 -0.3415 2.6319 -0.4321 8 7 0.0787 3.2673 -2.5185 9 6 -1.1346 3.9455 -2.6028 10 6 -1.8467 3.9469 -3.8021 11 6 -3.0384 4.6040 -3.8906 12 6 -3.5438 5.2925 -2.7704 13 6 -4.7733 5.9808 -2.8561 14 1 -4.9729 6.8135 -2.1981 15 6 -5.7329 5.5842 -3.7935 16 7 -5.6507 4.4050 -4.3555 17 14 -7.1319 6.7376 -4.2432 18 1 -6.5759 7.9933 -4.8083 19 1 -8.0066 6.0856 -5.2506 20 1 -7.9255 7.0506 -3.0276 21 6 -2.8160 5.2914 -1.5643 22 6 -1.6289 4.6241 -1.4891 23 6 3.5648 1.4444 0.1257 24 1 3.9355 2.4655 0.0365 25 6 3.9649 0.8736 1.4877 26 8 4.1293 0.6405 -0.9121 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.2719 2.1231 -1.9978 33 1 0.6673 3.2288 -3.2885 34 1 -1.4555 3.4228 -4.6615 35 1 -3.5909 4.6009 -4.8187 36 1 -6.3159 4.1303 -5.0057 37 1 -3.1969 5.8174 -0.7015 38 1 -1.0695 4.6226 -0.5652 39 1 3.5942 -0.1475 1.5768 40 1 5.0512 0.8753 1.5774 41 1 3.5344 1.4869 2.2793 42 1 3.8426 -0.2830 -0.8943 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454347482.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:54 Heat of formation + Delta-G solvation = -89.866287 kcal Electronic energy + Delta-G solvation = -23304.434159 eV Core-core repulsion = 19861.955393 eV Total energy + Delta-G solvation = -3442.478766 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.56973 -39.79513 -38.75837 -36.29490 -35.52712 -34.79415 -33.15820 -31.66315 -31.43612 -30.60844 -27.51499 -26.29446 -24.03684 -23.45584 -22.67187 -21.54368 -21.34817 -19.42991 -19.09365 -18.41890 -17.46777 -17.03181 -16.89924 -16.39900 -16.10571 -15.74961 -15.56818 -14.95603 -14.86326 -14.47085 -14.45871 -13.96160 -13.69943 -13.64484 -13.23248 -13.15227 -12.97721 -12.94542 -12.77952 -12.74103 -12.46767 -12.31831 -11.81238 -11.71182 -11.61088 -11.41740 -11.15289 -11.07206 -10.94090 -10.62353 -9.93208 -9.44579 -8.79118 -8.56757 -6.24812 0.88618 1.16207 1.39548 1.49570 1.53120 1.82602 2.22656 2.28736 2.78972 3.35835 3.51954 3.68349 3.75218 3.88926 4.16983 4.25590 4.34413 4.40688 4.52072 4.56140 4.71390 4.80632 4.91056 4.94164 5.01223 5.12090 5.14940 5.18038 5.21774 5.32218 5.33672 5.45286 5.51154 5.64427 5.66976 5.82982 6.06262 6.14240 6.28912 6.40899 6.67878 6.80152 6.95321 7.02798 7.22508 7.75543 8.35782 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.040531 B = 0.002966 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.671003 B = 9438.619879 C = 9472.684140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.132 4.132 3 C 0.130 3.870 4 H 0.073 0.927 5 N -0.723 5.723 6 C 0.692 3.308 7 O -0.613 6.613 8 N -0.663 5.663 9 C 0.034 3.966 10 C -0.116 4.116 11 C -0.169 4.169 12 C 0.073 3.927 13 C -0.498 4.498 14 H 0.074 0.926 15 C 0.034 3.966 16 N -0.827 5.827 17 Si 0.984 3.016 18 H -0.259 1.259 19 H -0.266 1.266 20 H -0.262 1.262 21 C -0.231 4.231 22 C -0.087 4.087 23 C 0.108 3.892 24 H 0.100 0.900 25 C -0.181 4.181 26 O -0.569 6.569 27 H 0.053 0.947 28 H 0.036 0.964 29 H 0.028 0.972 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.409 0.591 33 H 0.411 0.589 34 H 0.121 0.879 35 H 0.110 0.890 36 H 0.288 0.712 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.296 -8.647 4.137 19.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.170 4.170 3 C 0.025 3.975 4 H 0.091 0.909 5 N -0.380 5.380 6 C 0.393 3.607 7 O -0.493 6.493 8 N -0.311 5.311 9 C -0.061 4.061 10 C -0.136 4.136 11 C -0.189 4.189 12 C 0.070 3.930 13 C -0.528 4.528 14 H 0.092 0.908 15 C -0.180 4.180 16 N -0.453 5.453 17 Si 0.805 3.195 18 H -0.183 1.183 19 H -0.191 1.191 20 H -0.187 1.187 21 C -0.252 4.252 22 C -0.107 4.107 23 C 0.048 3.952 24 H 0.118 0.882 25 C -0.239 4.239 26 O -0.377 6.377 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.099 0.901 31 H 0.116 0.884 32 H 0.245 0.755 33 H 0.247 0.753 34 H 0.139 0.861 35 H 0.128 0.872 36 H 0.099 0.901 37 H 0.111 0.889 38 H 0.119 0.881 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 16.816 -8.305 4.694 19.333 hybrid contribution -0.859 0.020 -0.582 1.038 sum 15.957 -8.285 4.112 18.444 Atomic orbital electron populations 1.21682 0.96966 1.00046 1.01005 1.22005 0.95242 0.95958 1.03794 1.21706 0.96085 0.93614 0.86118 0.90919 1.44933 1.14423 1.60558 1.18066 1.16153 0.82917 0.78375 0.83229 1.90912 1.52711 1.65488 1.40154 1.41948 1.20056 1.55139 1.13950 1.16971 0.89937 1.03379 0.95774 1.20451 0.95011 1.01518 0.96660 1.20886 0.95580 1.03682 0.98778 1.17956 0.92881 0.91273 0.90874 1.19743 1.00118 1.15013 1.17931 0.90823 1.26755 1.01522 0.96050 0.93697 1.69890 1.34754 1.18279 1.22382 0.85229 0.76705 0.78717 0.78889 1.18300 1.19062 1.18686 1.20771 0.98844 1.08368 0.97184 1.20329 0.96553 0.96631 0.97193 1.22072 0.88610 0.96133 0.88369 0.88170 1.22476 1.02986 1.02598 0.95798 1.86561 1.72189 1.26055 1.52923 0.92776 0.94448 0.95313 0.90076 0.88447 0.75453 0.75312 0.86110 0.87220 0.90102 0.88933 0.88095 0.90460 0.90682 0.91225 0.76226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.82 8.51 71.98 0.61 -3.21 16 2 C -0.13 -2.33 4.89 30.60 0.15 -2.18 16 3 C 0.13 2.58 2.13 45.00 0.10 2.67 16 4 H 0.07 1.82 7.58 -2.39 -0.02 1.80 16 5 N -0.72 -17.02 5.02 -457.81 -2.30 -19.32 16 6 C 0.69 23.82 6.85 179.06 1.23 25.05 16 7 O -0.61 -26.49 11.20 -3.97 -0.04 -26.53 16 8 N -0.66 -23.01 5.31 -316.79 -1.68 -24.70 16 9 C 0.03 1.51 6.27 38.56 0.24 1.76 16 10 C -0.12 -5.36 9.90 22.14 0.22 -5.14 16 11 C -0.17 -9.03 8.63 22.48 0.19 -8.83 16 12 C 0.07 4.11 5.57 -21.27 -0.12 3.99 16 13 C -0.50 -27.85 9.04 23.39 0.21 -27.64 16 14 H 0.07 3.98 7.90 -2.91 -0.02 3.96 16 15 C 0.03 1.76 5.15 85.23 0.44 2.20 16 16 N -0.83 -44.07 10.95 21.82 0.24 -43.83 16 17 Si 0.98 38.96 29.59 68.60 2.03 40.99 16 18 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 19 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 20 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 21 C -0.23 -12.46 9.74 22.48 0.22 -12.24 16 22 C -0.09 -4.33 8.57 22.13 0.19 -4.14 16 23 C 0.11 1.49 3.49 30.60 0.11 1.59 16 24 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 25 C -0.18 -1.82 9.30 71.98 0.67 -1.15 16 26 O -0.57 -7.53 12.98 -148.98 -1.93 -9.46 16 27 H 0.05 1.29 8.14 -2.38 -0.02 1.28 16 28 H 0.04 1.17 7.84 -2.39 -0.02 1.15 16 29 H 0.03 0.98 5.64 -2.39 -0.01 0.97 16 30 H 0.08 1.16 7.00 -2.39 -0.02 1.14 16 31 H 0.10 1.22 6.34 -2.39 -0.02 1.20 16 32 H 0.41 7.57 8.40 -92.71 -0.78 6.80 16 33 H 0.41 10.86 8.83 -92.71 -0.82 10.04 16 34 H 0.12 4.72 8.06 -2.91 -0.02 4.70 16 35 H 0.11 6.01 6.18 -2.91 -0.02 5.99 16 36 H 0.29 13.86 8.30 -92.71 -0.77 13.09 16 37 H 0.09 4.81 8.06 -2.91 -0.02 4.79 16 38 H 0.10 4.99 6.47 -2.91 -0.02 4.98 16 39 H 0.08 0.59 6.46 -2.39 -0.02 0.58 16 40 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 41 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.39 2.92 7.31 -74.05 -0.54 2.38 16 Total: -1.00 -69.99 337.32 -0.30 -70.29 By element: Atomic # 1 Polarization: 40.89 SS G_CDS: -1.07 Total: 39.82 kcal Atomic # 6 Polarization: -31.72 SS G_CDS: 4.46 Total: -27.27 kcal Atomic # 7 Polarization: -84.11 SS G_CDS: -3.74 Total: -87.85 kcal Atomic # 8 Polarization: -34.01 SS G_CDS: -1.98 Total: -35.99 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Total: -69.99 -0.30 -70.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454347482.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.575 kcal (2) G-P(sol) polarization free energy of solvation -69.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds