Wall clock time and date at job start Tue Mar 31 2020 07:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47068 * 2 1 4 4 H 1.09004 * 109.47168 * 304.99623 * 3 2 1 5 5 C 1.53007 * 109.47173 * 185.00193 * 3 2 1 6 6 O 1.42894 * 109.46933 * 304.99499 * 5 3 2 7 7 N 1.46496 * 109.47332 * 64.99816 * 3 2 1 8 8 C 1.46504 * 119.99730 * 60.00391 * 7 3 2 9 9 C 1.34770 * 120.00266 * 239.99931 * 7 3 2 10 10 O 1.21589 * 120.00111 * 0.02562 * 9 7 3 11 11 N 1.34783 * 120.00281 * 179.97438 * 9 7 3 12 12 C 1.39954 * 120.00089 * 174.83170 * 11 9 7 13 13 C 1.39288 * 119.94679 * 146.37658 * 12 11 9 14 14 C 1.38482 * 120.43271 * 179.97438 * 13 12 11 15 15 C 1.37691 * 120.32055 * 0.02562 * 14 13 12 16 16 C 1.40742 * 119.88122 * 0.02562 * 15 14 13 17 17 C 1.41411 * 120.21127 * 180.02562 * 16 15 14 18 18 H 1.07994 * 119.99889 * 151.76527 * 17 16 15 19 19 C 1.39932 * 119.99460 * 331.76763 * 17 16 15 20 20 N 1.30832 * 120.00327 * 348.98787 * 19 17 16 21 21 Si 1.86796 * 119.99811 * 168.99124 * 19 17 16 22 22 H 1.48503 * 109.47376 * 94.98585 * 21 19 17 23 23 H 1.48496 * 109.47463 * 214.98604 * 21 19 17 24 24 H 1.48504 * 109.47302 * 334.99115 * 21 19 17 25 25 C 1.38237 * 119.94974 * 326.10309 * 12 11 9 26 26 H 1.09004 * 109.46822 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47318 * 60.00407 * 1 2 3 28 28 H 1.08996 * 109.47256 * 299.99874 * 1 2 3 29 29 H 1.09002 * 109.47318 * 119.99593 * 2 1 3 30 30 H 1.09002 * 109.47655 * 240.00137 * 2 1 3 31 31 H 1.08996 * 109.47278 * 65.00216 * 5 3 2 32 32 H 1.09003 * 109.46993 * 184.99618 * 5 3 2 33 33 H 0.96701 * 113.99737 * 179.97438 * 6 5 3 34 34 H 1.08998 * 109.47139 * 90.00058 * 8 7 3 35 35 H 1.08998 * 109.46732 * 209.99833 * 8 7 3 36 36 H 1.09001 * 109.47015 * 329.99745 * 8 7 3 37 37 H 0.97000 * 119.99438 * 354.83768 * 11 9 7 38 38 H 1.08003 * 119.78118 * 359.97438 * 13 12 11 39 39 H 1.07995 * 119.84288 * 180.02562 * 14 13 12 40 40 H 1.07993 * 120.05803 * 179.97438 * 15 14 13 41 41 H 0.96995 * 119.99717 * 180.02562 * 20 19 17 42 42 H 1.08004 * 120.15635 * 0.02562 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1258 6 8 4.1293 0.6405 0.9121 7 7 1.6523 2.0975 1.2517 8 6 2.1139 1.5590 2.5337 9 6 0.8713 3.1955 1.2241 10 8 0.4879 3.6422 0.1602 11 7 0.5143 3.7978 2.3757 12 6 -0.2053 4.9978 2.3440 13 6 -1.1450 5.2714 3.3351 14 6 -1.8623 6.4558 3.3138 15 6 -1.6544 7.3764 2.3113 16 6 -0.7089 7.1132 1.3026 17 6 -0.4894 8.0541 0.2700 18 1 0.4746 8.1099 -0.2136 19 6 -1.5213 8.9127 -0.1250 20 7 -2.7415 8.7081 0.3003 21 14 -1.1566 10.3509 -1.2598 22 1 -1.4275 9.9540 -2.6649 23 1 -2.0219 11.5012 -0.8949 24 1 0.2697 10.7410 -1.1220 25 6 0.0217 5.9121 1.3324 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.8498 1.0378 -1.0961 32 1 3.9354 2.4655 -0.0367 33 1 5.0951 0.5958 0.8936 34 1 3.0652 2.0196 2.7998 35 1 1.3761 1.7768 3.3059 36 1 2.2436 0.4801 2.4489 37 1 0.7562 3.3996 3.2265 38 1 -1.3153 4.5551 4.1253 39 1 -2.5883 6.6583 4.0873 40 1 -2.2164 8.2985 2.2986 41 1 -3.4568 9.3031 0.0261 42 1 0.7530 5.7026 0.5657 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455901889.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:38 Heat of formation + Delta-G solvation = -52.753931 kcal Electronic energy + Delta-G solvation = -23725.705309 eV Core-core repulsion = 20284.835856 eV Total energy + Delta-G solvation = -3440.869454 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.26025 -38.10751 -36.94779 -35.31234 -34.41863 -33.26914 -32.32088 -29.73288 -29.12914 -27.79520 -26.41265 -25.21188 -23.64720 -22.07844 -20.86913 -20.23333 -19.03403 -18.33372 -17.49684 -17.04377 -16.01969 -15.76697 -15.34741 -14.80753 -14.49580 -14.46670 -14.16623 -13.81379 -13.39444 -13.11160 -12.89251 -12.69258 -12.65531 -12.41391 -12.09414 -11.97171 -11.62433 -11.26086 -11.20400 -11.08193 -11.01403 -10.82351 -10.57517 -10.43706 -10.16053 -10.02736 -9.67327 -9.46894 -9.13331 -8.82203 -8.42672 -7.33366 -6.77469 -6.58667 -4.27025 2.79115 2.89870 3.06271 3.14160 3.19321 3.26640 3.76434 4.03383 4.14463 4.31506 4.71423 4.76105 4.96497 5.11344 5.20389 5.24143 5.37464 5.52569 5.57490 5.71479 5.79715 5.88323 5.91342 5.97067 6.14700 6.29812 6.34913 6.46461 6.61366 6.89293 6.96389 7.12194 7.17821 7.33495 7.39238 7.42881 7.76203 7.88441 8.07440 8.18226 8.34150 8.49199 8.74937 8.98872 9.05437 9.13973 10.34271 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020269 B = 0.003935 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.078127 B = 7113.327106 C = 7715.969157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.159 3.841 4 H 0.114 0.886 5 C 0.066 3.934 6 O -0.568 6.568 7 N -0.626 5.626 8 C 0.092 3.908 9 C 0.699 3.301 10 O -0.565 6.565 11 N -0.681 5.681 12 C 0.167 3.833 13 C -0.260 4.260 14 C -0.094 4.094 15 C -0.169 4.169 16 C 0.119 3.881 17 C -0.458 4.458 18 H 0.075 0.925 19 C 0.073 3.927 20 N -0.802 5.802 21 Si 0.910 3.090 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.262 1.262 25 C -0.207 4.207 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.374 0.626 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.077 0.923 37 H 0.394 0.606 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.121 0.879 41 H 0.278 0.722 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.310 -14.243 2.192 17.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.054 3.946 4 H 0.132 0.868 5 C -0.013 4.013 6 O -0.373 6.373 7 N -0.364 5.364 8 C -0.051 4.051 9 C 0.401 3.599 10 O -0.441 6.441 11 N -0.329 5.329 12 C 0.075 3.925 13 C -0.282 4.282 14 C -0.113 4.113 15 C -0.189 4.189 16 C 0.116 3.884 17 C -0.488 4.488 18 H 0.093 0.907 19 C -0.143 4.143 20 N -0.429 5.429 21 Si 0.735 3.265 22 H -0.197 1.197 23 H -0.202 1.202 24 H -0.186 1.186 25 C -0.228 4.228 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.221 0.779 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.229 0.771 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.139 0.861 41 H 0.089 0.911 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 9.178 -13.905 1.520 16.730 hybrid contribution 0.742 0.403 -0.205 0.868 sum 9.919 -13.502 1.316 16.806 Atomic orbital electron populations 1.21718 0.95415 1.00952 1.02589 1.21774 0.96310 0.95822 1.02580 1.21082 0.91797 0.93767 0.87955 0.86818 1.22625 0.94142 0.94417 0.90074 1.86502 1.25025 1.72356 1.53393 1.46976 1.53526 1.29016 1.06914 1.21582 0.98690 1.00446 0.84391 1.15945 0.79294 0.79915 0.84771 1.90971 1.58582 1.65604 1.28914 1.42757 1.58309 1.24820 1.07000 1.17254 0.93554 0.83847 0.97858 1.20021 1.04222 1.00882 1.03083 1.20458 0.98295 0.94342 0.98181 1.21388 1.03091 1.00123 0.94333 1.17506 0.89836 0.89992 0.91059 1.19532 0.98494 1.14565 1.16206 0.90664 1.25866 0.94417 0.97817 0.96156 1.69811 1.00417 1.34494 1.38136 0.86276 0.79569 0.80419 0.80262 1.19669 1.20173 1.18585 1.20993 1.07260 0.93884 1.00692 0.93088 0.92514 0.92725 0.90956 0.91332 0.92746 0.93131 0.77894 0.92897 0.92674 0.90401 0.77100 0.89451 0.89087 0.86129 0.91135 0.87523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.80 37.15 0.36 -1.46 16 2 C -0.13 -1.36 5.07 -26.74 -0.14 -1.50 16 3 C 0.16 2.01 2.56 -67.93 -0.17 1.84 16 4 H 0.11 1.71 6.90 -51.93 -0.36 1.35 16 5 C 0.07 0.66 6.79 37.16 0.25 0.91 16 6 O -0.57 -4.80 10.61 -35.23 -0.37 -5.17 16 7 N -0.63 -9.03 2.21 -179.67 -0.40 -9.42 16 8 C 0.09 1.03 8.54 59.85 0.51 1.54 16 9 C 0.70 13.56 8.01 -86.92 -0.70 12.86 16 10 O -0.57 -13.52 13.38 5.29 0.07 -13.45 16 11 N -0.68 -13.07 5.22 -14.27 -0.07 -13.14 16 12 C 0.17 3.95 6.26 -83.76 -0.52 3.43 16 13 C -0.26 -5.94 9.97 -39.10 -0.39 -6.33 16 14 C -0.09 -2.25 10.02 -39.69 -0.40 -2.65 16 15 C -0.17 -4.56 8.66 -38.84 -0.34 -4.90 16 16 C 0.12 3.36 5.55 -106.85 -0.59 2.77 16 17 C -0.46 -12.88 9.06 -37.74 -0.34 -13.22 16 18 H 0.08 2.06 7.87 -52.49 -0.41 1.65 16 19 C 0.07 1.94 5.25 -17.34 -0.09 1.85 16 20 N -0.80 -21.71 10.81 55.55 0.60 -21.11 16 21 Si 0.91 19.62 29.57 -169.99 -5.03 14.59 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 23 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 24 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 25 C -0.21 -5.54 8.39 -38.69 -0.32 -5.86 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.77 7.75 -51.93 -0.40 0.36 16 29 H 0.07 0.76 6.06 -51.93 -0.31 0.45 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.37 1.66 9.12 45.56 0.42 2.07 16 34 H 0.05 0.57 7.97 -51.93 -0.41 0.15 16 35 H 0.05 0.57 6.29 -51.93 -0.33 0.24 16 36 H 0.08 0.78 5.78 -51.93 -0.30 0.48 16 37 H 0.39 6.07 6.51 -40.82 -0.27 5.80 16 38 H 0.09 1.73 8.06 -52.48 -0.42 1.30 16 39 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 40 H 0.12 3.33 6.18 -52.49 -0.32 3.00 16 41 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 42 H 0.11 2.96 6.44 -52.48 -0.34 2.63 16 LS Contribution 339.07 15.07 5.11 5.11 Total: -1.00 -32.86 339.07 -8.11 -40.96 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -5.14 Total: 12.34 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -2.88 Total: -10.72 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: 0.13 Total: -43.67 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.30 Total: -18.62 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.03 Total: 14.59 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.86 -8.11 -40.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455901889.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.790 kcal (2) G-P(sol) polarization free energy of solvation -32.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds