Wall clock time and date at job start Tue Mar 31 2020 07:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47068 * 2 1 4 4 H 1.09004 * 109.47168 * 304.99623 * 3 2 1 5 5 C 1.53007 * 109.47173 * 185.00193 * 3 2 1 6 6 O 1.42894 * 109.46933 * 304.99499 * 5 3 2 7 7 N 1.46496 * 109.47332 * 64.99816 * 3 2 1 8 8 C 1.46504 * 119.99730 * 60.00391 * 7 3 2 9 9 C 1.34770 * 120.00266 * 239.99931 * 7 3 2 10 10 O 1.21589 * 120.00111 * 0.02562 * 9 7 3 11 11 N 1.34783 * 120.00281 * 179.97438 * 9 7 3 12 12 C 1.39954 * 120.00089 * 174.83170 * 11 9 7 13 13 C 1.39288 * 119.94679 * 146.37658 * 12 11 9 14 14 C 1.38482 * 120.43271 * 179.97438 * 13 12 11 15 15 C 1.37691 * 120.32055 * 0.02562 * 14 13 12 16 16 C 1.40742 * 119.88122 * 0.02562 * 15 14 13 17 17 C 1.41411 * 120.21127 * 180.02562 * 16 15 14 18 18 H 1.07994 * 119.99889 * 151.76527 * 17 16 15 19 19 C 1.39932 * 119.99460 * 331.76763 * 17 16 15 20 20 N 1.30832 * 120.00327 * 348.98787 * 19 17 16 21 21 Si 1.86796 * 119.99811 * 168.99124 * 19 17 16 22 22 H 1.48503 * 109.47376 * 94.98585 * 21 19 17 23 23 H 1.48496 * 109.47463 * 214.98604 * 21 19 17 24 24 H 1.48504 * 109.47302 * 334.99115 * 21 19 17 25 25 C 1.38237 * 119.94974 * 326.10309 * 12 11 9 26 26 H 1.09004 * 109.46822 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47318 * 60.00407 * 1 2 3 28 28 H 1.08996 * 109.47256 * 299.99874 * 1 2 3 29 29 H 1.09002 * 109.47318 * 119.99593 * 2 1 3 30 30 H 1.09002 * 109.47655 * 240.00137 * 2 1 3 31 31 H 1.08996 * 109.47278 * 65.00216 * 5 3 2 32 32 H 1.09003 * 109.46993 * 184.99618 * 5 3 2 33 33 H 0.96701 * 113.99737 * 179.97438 * 6 5 3 34 34 H 1.08998 * 109.47139 * 90.00058 * 8 7 3 35 35 H 1.08998 * 109.46732 * 209.99833 * 8 7 3 36 36 H 1.09001 * 109.47015 * 329.99745 * 8 7 3 37 37 H 0.97000 * 119.99438 * 354.83768 * 11 9 7 38 38 H 1.08003 * 119.78118 * 359.97438 * 13 12 11 39 39 H 1.07995 * 119.84288 * 180.02562 * 14 13 12 40 40 H 1.07993 * 120.05803 * 179.97438 * 15 14 13 41 41 H 0.96995 * 119.99717 * 180.02562 * 20 19 17 42 42 H 1.08004 * 120.15635 * 0.02562 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1258 6 8 4.1293 0.6405 0.9121 7 7 1.6523 2.0975 1.2517 8 6 2.1139 1.5590 2.5337 9 6 0.8713 3.1955 1.2241 10 8 0.4879 3.6422 0.1602 11 7 0.5143 3.7978 2.3757 12 6 -0.2053 4.9978 2.3440 13 6 -1.1450 5.2714 3.3351 14 6 -1.8623 6.4558 3.3138 15 6 -1.6544 7.3764 2.3113 16 6 -0.7089 7.1132 1.3026 17 6 -0.4894 8.0541 0.2700 18 1 0.4746 8.1099 -0.2136 19 6 -1.5213 8.9127 -0.1250 20 7 -2.7415 8.7081 0.3003 21 14 -1.1566 10.3509 -1.2598 22 1 -1.4275 9.9540 -2.6649 23 1 -2.0219 11.5012 -0.8949 24 1 0.2697 10.7410 -1.1220 25 6 0.0217 5.9121 1.3324 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.8498 1.0378 -1.0961 32 1 3.9354 2.4655 -0.0367 33 1 5.0951 0.5958 0.8936 34 1 3.0652 2.0196 2.7998 35 1 1.3761 1.7768 3.3059 36 1 2.2436 0.4801 2.4489 37 1 0.7562 3.3996 3.2265 38 1 -1.3153 4.5551 4.1253 39 1 -2.5883 6.6583 4.0873 40 1 -2.2164 8.2985 2.2986 41 1 -3.4568 9.3031 0.0261 42 1 0.7530 5.7026 0.5657 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455901889.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:37 Heat of formation + Delta-G solvation = -75.086888 kcal Electronic energy + Delta-G solvation = -23726.673739 eV Core-core repulsion = 20284.835856 eV Total energy + Delta-G solvation = -3441.837883 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.71070 -39.56061 -38.37595 -36.34394 -36.19811 -34.96714 -33.61291 -31.73193 -30.26006 -29.39696 -27.53663 -27.21719 -24.61151 -23.59874 -22.77725 -21.76678 -20.34258 -19.80621 -19.06318 -18.08564 -17.49878 -17.19263 -16.88890 -16.44316 -16.32121 -15.46837 -15.44572 -15.17644 -14.76202 -14.69789 -14.37959 -14.04462 -13.83336 -13.58883 -13.51361 -13.35209 -13.14189 -12.93695 -12.79538 -12.56044 -12.22039 -12.19383 -12.00993 -11.88264 -11.75501 -11.57158 -11.27622 -11.02977 -10.85390 -10.67672 -9.63936 -9.34768 -8.65929 -8.54883 -6.37176 0.93959 1.03341 1.36120 1.48195 1.52118 1.63691 2.17389 2.23134 2.77780 2.99455 3.42525 3.74287 3.75715 4.05110 4.20072 4.28668 4.46444 4.47046 4.49036 4.62652 4.63843 4.68645 4.71990 4.96978 5.01799 5.06205 5.06928 5.11096 5.14339 5.15116 5.19384 5.34654 5.39151 5.59319 5.78914 5.84938 6.05194 6.12057 6.15505 6.39172 6.70798 6.93522 6.96251 6.97375 7.03376 7.59369 8.38923 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020269 B = 0.003935 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.078127 B = 7113.327106 C = 7715.969157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C 0.146 3.854 4 H 0.081 0.919 5 C 0.079 3.921 6 O -0.571 6.571 7 N -0.613 5.613 8 C 0.088 3.912 9 C 0.692 3.308 10 O -0.619 6.619 11 N -0.671 5.671 12 C 0.174 3.826 13 C -0.249 4.249 14 C -0.091 4.091 15 C -0.194 4.194 16 C 0.088 3.912 17 C -0.502 4.502 18 H 0.064 0.936 19 C 0.032 3.968 20 N -0.832 5.832 21 Si 0.986 3.014 22 H -0.267 1.267 23 H -0.259 1.259 24 H -0.260 1.260 25 C -0.232 4.232 26 H 0.072 0.928 27 H 0.035 0.965 28 H 0.032 0.968 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.034 0.966 33 H 0.395 0.605 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.414 0.586 38 H 0.130 0.870 39 H 0.124 0.876 40 H 0.107 0.893 41 H 0.287 0.713 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.190 -16.080 3.412 19.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C 0.043 3.957 4 H 0.099 0.901 5 C 0.000 4.000 6 O -0.379 6.379 7 N -0.350 5.350 8 C -0.054 4.054 9 C 0.394 3.606 10 O -0.498 6.498 11 N -0.321 5.321 12 C 0.080 3.920 13 C -0.271 4.271 14 C -0.110 4.110 15 C -0.214 4.214 16 C 0.086 3.914 17 C -0.532 4.532 18 H 0.082 0.918 19 C -0.181 4.181 20 N -0.459 5.459 21 Si 0.806 3.194 22 H -0.192 1.192 23 H -0.183 1.183 24 H -0.184 1.184 25 C -0.254 4.254 26 H 0.091 0.909 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.245 0.755 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.115 0.885 37 H 0.254 0.746 38 H 0.148 0.852 39 H 0.142 0.858 40 H 0.125 0.875 41 H 0.098 0.902 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.117 -15.821 2.796 18.986 hybrid contribution 0.519 0.770 -0.496 1.053 sum 10.637 -15.051 2.299 18.573 Atomic orbital electron populations 1.21704 0.96703 1.01648 1.00473 1.21716 0.94986 0.94375 1.04181 1.21292 0.93975 0.94357 0.86111 0.90056 1.22350 0.91870 0.94120 0.91691 1.86429 1.27054 1.71655 1.52754 1.47035 1.51639 1.27250 1.09043 1.21827 0.99312 1.01482 0.82749 1.16194 0.79610 0.80889 0.83860 1.90942 1.60673 1.67423 1.30793 1.42532 1.57869 1.23517 1.08183 1.17332 0.93412 0.84502 0.96791 1.20441 1.02433 1.00965 1.03247 1.20835 0.98462 0.93891 0.97796 1.21352 1.03697 1.00821 0.95544 1.17848 0.90947 0.90752 0.91879 1.19749 0.98963 1.16813 1.17651 0.91772 1.26732 0.93741 1.00069 0.97540 1.69861 1.01239 1.35608 1.39203 0.85154 0.79596 0.76821 0.77829 1.19163 1.18295 1.18359 1.20925 1.07819 0.94881 1.01815 0.90914 0.94570 0.94916 0.89666 0.89172 0.90337 0.94785 0.75462 0.91919 0.91578 0.88528 0.74639 0.85195 0.85767 0.87533 0.90244 0.89912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.80 71.98 0.71 -2.77 16 2 C -0.11 -2.23 5.07 30.59 0.16 -2.07 16 3 C 0.15 3.62 2.56 44.99 0.11 3.74 16 4 H 0.08 2.57 6.90 -2.39 -0.02 2.55 16 5 C 0.08 1.42 6.79 71.98 0.49 1.91 16 6 O -0.57 -7.73 10.61 -148.98 -1.58 -9.31 16 7 N -0.61 -17.19 2.21 -840.61 -1.86 -19.05 16 8 C 0.09 1.72 8.54 127.77 1.09 2.81 16 9 C 0.69 27.28 8.01 179.05 1.43 28.72 16 10 O -0.62 -31.23 13.38 -4.00 -0.05 -31.29 16 11 N -0.67 -25.33 5.22 -317.32 -1.66 -26.99 16 12 C 0.17 8.24 6.26 38.10 0.24 8.47 16 13 C -0.25 -10.91 9.97 22.58 0.23 -10.68 16 14 C -0.09 -4.29 10.02 22.20 0.22 -4.06 16 15 C -0.19 -10.76 8.66 22.75 0.20 -10.56 16 16 C 0.09 5.26 5.55 -21.31 -0.12 5.14 16 17 C -0.50 -29.92 9.06 23.46 0.21 -29.70 16 18 H 0.06 3.78 7.87 -2.91 -0.02 3.76 16 19 C 0.03 1.77 5.25 85.25 0.45 2.21 16 20 N -0.83 -46.43 10.81 21.82 0.24 -46.19 16 21 Si 0.99 41.30 29.57 68.60 2.03 43.33 16 22 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 23 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 24 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 25 C -0.23 -13.10 8.39 22.85 0.19 -12.90 16 26 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.03 0.89 7.75 -2.39 -0.02 0.87 16 29 H 0.08 1.48 6.06 -2.39 -0.01 1.47 16 30 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.40 2.06 9.12 -74.06 -0.68 1.39 16 34 H 0.06 1.15 7.97 -2.39 -0.02 1.13 16 35 H 0.07 1.15 6.29 -2.39 -0.02 1.13 16 36 H 0.10 1.58 5.78 -2.39 -0.01 1.56 16 37 H 0.41 11.83 6.51 -92.71 -0.60 11.22 16 38 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 39 H 0.12 4.95 8.06 -2.91 -0.02 4.92 16 40 H 0.11 6.11 6.18 -2.91 -0.02 6.09 16 41 H 0.29 14.38 8.30 -92.71 -0.77 13.61 16 42 H 0.08 4.96 6.44 -2.91 -0.02 4.94 16 Total: -1.00 -76.56 339.07 2.49 -74.06 By element: Atomic # 1 Polarization: 35.41 SS G_CDS: -0.23 Total: 35.19 kcal Atomic # 6 Polarization: -25.36 SS G_CDS: 5.61 Total: -19.76 kcal Atomic # 7 Polarization: -88.95 SS G_CDS: -3.28 Total: -92.23 kcal Atomic # 8 Polarization: -38.96 SS G_CDS: -1.63 Total: -40.59 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -76.56 2.49 -74.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455901889.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.023 kcal (2) G-P(sol) polarization free energy of solvation -76.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds