Wall clock time and date at job start Tue Mar 31 2020 06:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47322 * 2 1 4 4 H 1.09004 * 109.46768 * 304.99751 * 3 2 1 5 5 N 1.46504 * 109.47446 * 64.99351 * 3 2 1 6 6 C 1.34775 * 120.00146 * 275.00764 * 5 3 2 7 7 O 1.21581 * 120.00129 * 359.71687 * 6 5 3 8 8 N 1.34775 * 119.99679 * 179.97438 * 6 5 3 9 9 C 1.39960 * 119.99910 * 174.54024 * 8 6 5 10 10 C 1.39284 * 119.94686 * 146.38403 * 9 8 6 11 11 C 1.38493 * 120.42960 * 179.97438 * 10 9 8 12 12 C 1.37681 * 120.31992 * 0.02562 * 11 10 9 13 13 C 1.40748 * 119.88409 * 0.02562 * 12 11 10 14 14 C 1.41404 * 120.20793 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99819 * 151.77271 * 14 13 12 16 16 C 1.39934 * 120.00270 * 331.76644 * 14 13 12 17 17 N 1.30827 * 120.00054 * 348.99750 * 16 14 13 18 18 Si 1.86801 * 120.00007 * 168.99129 * 16 14 13 19 19 H 1.48493 * 109.47183 * 90.00267 * 18 16 14 20 20 H 1.48498 * 109.47207 * 210.00563 * 18 16 14 21 21 H 1.48500 * 109.47125 * 330.00564 * 18 16 14 22 22 C 1.38231 * 119.94615 * 326.11252 * 9 8 6 23 23 C 1.52992 * 109.47217 * 184.99839 * 3 2 1 24 24 H 1.09004 * 109.47180 * 299.99659 * 23 3 2 25 25 C 1.53006 * 109.47410 * 179.97438 * 23 3 2 26 26 O 1.42904 * 109.47326 * 59.99695 * 23 3 2 27 27 H 1.09004 * 109.46696 * 60.00279 * 1 2 3 28 28 H 1.08998 * 109.47141 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47228 * 300.00114 * 1 2 3 30 30 H 1.09003 * 109.46982 * 239.99418 * 2 1 3 31 31 H 1.09004 * 109.46696 * 119.99721 * 2 1 3 32 32 H 0.96998 * 119.99510 * 95.00006 * 5 3 2 33 33 H 0.96997 * 120.00242 * 354.54205 * 8 6 5 34 34 H 1.08001 * 119.78635 * 359.97438 * 10 9 8 35 35 H 1.07999 * 119.83972 * 180.02562 * 11 10 9 36 36 H 1.08003 * 120.05655 * 179.97438 * 12 11 10 37 37 H 0.96996 * 120.00209 * 179.97438 * 17 16 14 38 38 H 1.08002 * 120.16166 * 359.97438 * 22 9 8 39 39 H 1.08991 * 109.47346 * 179.97438 * 25 23 3 40 40 H 1.09004 * 109.46972 * 300.00155 * 25 23 3 41 41 H 1.08999 * 109.46528 * 59.99969 * 25 23 3 42 42 H 0.96699 * 113.99859 * 179.97438 * 26 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 -0.8419 5 7 1.6524 2.0976 1.2517 6 6 0.4351 2.6644 1.3668 7 8 -0.3394 2.6366 0.4301 8 7 0.0784 3.2666 2.5186 9 6 -1.1380 3.9538 2.6014 10 6 -1.8485 3.9679 3.7993 11 6 -3.0530 4.6452 3.8926 12 6 -3.5617 5.3121 2.8008 13 6 -2.8554 5.3057 1.5834 14 6 -3.3713 5.9888 0.4579 15 1 -2.6989 6.3796 -0.2916 16 6 -4.7529 6.1584 0.3151 17 7 -5.5761 5.5082 1.0969 18 14 -5.4220 7.3134 -0.9918 19 1 -5.6344 6.5619 -2.2548 20 1 -6.7133 7.8853 -0.5328 21 1 -4.4500 8.4113 -1.2266 22 6 -1.6297 4.6222 1.4957 23 6 3.5648 1.4442 -0.1257 24 1 3.9995 0.9052 0.7162 25 6 4.0749 2.8868 -0.1263 26 8 3.9430 0.8053 -1.3467 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 2.2719 2.1232 1.9977 33 1 0.6647 3.2238 3.2901 34 1 -1.4577 3.4473 4.6611 35 1 -3.5958 4.6502 4.8262 36 1 -4.5016 5.8385 2.8781 37 1 -6.5338 5.6261 0.9981 38 1 -1.0771 4.6159 0.5678 39 1 5.1612 2.8880 -0.2154 40 1 3.6403 3.4254 -0.9684 41 1 3.7865 3.3744 0.8048 42 1 4.8982 0.7705 -1.4930 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455905991.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:04 Heat of formation + Delta-G solvation = -65.100855 kcal Electronic energy + Delta-G solvation = -23541.645232 eV Core-core repulsion = 20100.240375 eV Total energy + Delta-G solvation = -3441.404857 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.21311 -38.32955 -37.14730 -35.19713 -34.24799 -33.06472 -31.87927 -30.80303 -29.74291 -27.93488 -26.32726 -25.21957 -22.11223 -22.02189 -20.86450 -20.55119 -20.04974 -18.15542 -17.55416 -17.45223 -15.85868 -15.57098 -15.12819 -14.88229 -14.63167 -14.46414 -14.43023 -13.79367 -13.34964 -13.04589 -12.88582 -12.82610 -12.53388 -12.35486 -12.09159 -11.76715 -11.62343 -11.31451 -11.21670 -11.03685 -10.67772 -10.61695 -10.56798 -10.43967 -10.29320 -10.07279 -9.67699 -9.50035 -9.16704 -8.86249 -8.76296 -7.34622 -6.79886 -6.59690 -4.27904 2.75697 2.87265 3.04146 3.14093 3.18908 3.26420 3.77004 4.02796 4.10589 4.44577 4.66139 4.72899 4.75507 4.85194 5.28650 5.32876 5.46742 5.51994 5.71867 5.78126 5.89396 5.95004 6.08568 6.19589 6.28104 6.37202 6.44650 6.67396 6.73921 6.84384 6.88767 7.10645 7.16530 7.31772 7.34857 7.41847 7.75703 7.88391 8.06176 8.17118 8.32722 8.50109 8.74061 8.97881 9.04304 9.12456 10.33375 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018561 B = 0.003886 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.202139 B = 7202.764128 C = 7832.375603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.127 4.127 3 C 0.171 3.829 4 H 0.096 0.904 5 N -0.744 5.744 6 C 0.699 3.301 7 O -0.553 6.553 8 N -0.683 5.683 9 C 0.168 3.832 10 C -0.261 4.261 11 C -0.094 4.094 12 C -0.170 4.170 13 C 0.119 3.881 14 C -0.457 4.457 15 H 0.075 0.925 16 C 0.074 3.926 17 N -0.802 5.802 18 Si 0.910 3.090 19 H -0.270 1.270 20 H -0.277 1.277 21 H -0.262 1.262 22 C -0.207 4.207 23 C 0.098 3.902 24 H 0.057 0.943 25 C -0.186 4.186 26 O -0.559 6.559 27 H 0.061 0.939 28 H 0.040 0.960 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.389 0.611 33 H 0.392 0.608 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.121 0.879 37 H 0.278 0.722 38 H 0.108 0.892 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.690 -6.755 1.117 18.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.166 4.166 3 C 0.065 3.935 4 H 0.114 0.886 5 N -0.402 5.402 6 C 0.400 3.600 7 O -0.428 6.428 8 N -0.329 5.329 9 C 0.076 3.924 10 C -0.283 4.283 11 C -0.113 4.113 12 C -0.189 4.189 13 C 0.116 3.884 14 C -0.488 4.488 15 H 0.093 0.907 16 C -0.142 4.142 17 N -0.428 5.428 18 Si 0.735 3.265 19 H -0.196 1.196 20 H -0.202 1.202 21 H -0.186 1.186 22 C -0.228 4.228 23 C 0.038 3.962 24 H 0.075 0.925 25 C -0.243 4.243 26 O -0.364 6.364 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.222 0.778 33 H 0.226 0.774 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.139 0.861 37 H 0.089 0.911 38 H 0.126 0.874 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 15.084 -6.881 0.165 16.580 hybrid contribution 0.846 0.395 0.358 1.000 sum 15.930 -6.485 0.523 17.208 Atomic orbital electron populations 1.21797 0.94443 1.00177 1.03780 1.21901 0.97292 0.95589 1.01838 1.20592 0.91577 0.93961 0.87355 0.88559 1.45027 1.16197 1.62520 1.16461 1.15857 0.81862 0.78421 0.83880 1.91018 1.50761 1.62740 1.38241 1.42599 1.21727 1.55817 1.12781 1.17208 0.84886 0.94683 0.95622 1.20018 0.99124 1.12761 0.96356 1.20459 0.94765 0.98556 0.97523 1.21394 1.01935 1.03834 0.91784 1.17501 0.89904 0.88516 0.92443 1.19531 0.91655 1.31544 1.06040 0.90654 1.25865 0.97143 0.94628 0.96609 1.69804 1.04243 1.33771 1.34984 0.86290 0.78565 0.80824 0.80864 1.19553 1.20223 1.18605 1.20995 1.01102 1.03542 0.97188 1.21884 0.94884 0.92436 0.87001 0.92505 1.22509 1.00909 0.97184 1.03724 1.86502 1.28439 1.80900 1.40590 0.91985 0.94062 0.92081 0.90672 0.92644 0.77751 0.77440 0.89447 0.89118 0.86148 0.91102 0.87440 0.92394 0.91388 0.91261 0.77333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 8.52 37.16 0.32 -1.96 16 2 C -0.13 -1.61 5.53 -26.73 -0.15 -1.76 16 3 C 0.17 2.14 2.05 -67.93 -0.14 2.00 16 4 H 0.10 1.52 7.57 -51.93 -0.39 1.12 16 5 N -0.74 -9.38 4.34 -58.68 -0.25 -9.64 16 6 C 0.70 12.51 6.85 -86.92 -0.60 11.92 16 7 O -0.55 -12.54 11.21 5.29 0.06 -12.48 16 8 N -0.68 -12.10 5.35 -14.27 -0.08 -12.18 16 9 C 0.17 3.83 6.26 -83.76 -0.52 3.31 16 10 C -0.26 -5.79 9.97 -39.10 -0.39 -6.18 16 11 C -0.09 -2.22 10.02 -39.69 -0.40 -2.62 16 12 C -0.17 -4.52 8.66 -38.84 -0.34 -4.85 16 13 C 0.12 3.33 5.55 -106.85 -0.59 2.74 16 14 C -0.46 -12.79 9.06 -37.74 -0.34 -13.13 16 15 H 0.08 2.05 7.87 -52.48 -0.41 1.64 16 16 C 0.07 1.94 5.25 -17.34 -0.09 1.85 16 17 N -0.80 -21.60 10.81 55.55 0.60 -21.00 16 18 Si 0.91 19.60 29.57 -169.99 -5.03 14.57 16 19 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 20 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 22 C -0.21 -5.41 8.39 -38.69 -0.32 -5.74 16 23 C 0.10 0.88 3.21 -26.73 -0.09 0.79 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 C -0.19 -1.56 9.38 37.16 0.35 -1.22 16 26 O -0.56 -5.09 12.56 -35.23 -0.44 -5.53 16 27 H 0.06 1.09 7.85 -51.93 -0.41 0.69 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 1.11 5.65 -51.93 -0.29 0.82 16 30 H 0.07 0.92 7.54 -51.93 -0.39 0.53 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.39 3.55 8.41 -40.82 -0.34 3.21 16 33 H 0.39 5.29 8.83 -40.82 -0.36 4.93 16 34 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 36 H 0.12 3.30 6.18 -52.48 -0.32 2.97 16 37 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 38 H 0.11 2.92 6.44 -52.49 -0.34 2.58 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.58 7.45 -51.93 -0.39 0.20 16 42 H 0.38 1.72 9.08 45.56 0.41 2.13 16 LS Contribution 341.86 15.07 5.15 5.15 Total: -1.00 -32.67 341.86 -8.62 -41.30 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -5.33 Total: 14.67 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -3.30 Total: -14.86 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.27 Total: -42.81 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.38 Total: -18.01 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.03 Total: 14.57 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.67 -8.62 -41.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455905991.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.805 kcal (2) G-P(sol) polarization free energy of solvation -32.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds