Wall clock time and date at job start Tue Mar 31 2020 06:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47322 * 2 1 4 4 H 1.09004 * 109.46768 * 304.99751 * 3 2 1 5 5 N 1.46504 * 109.47446 * 64.99351 * 3 2 1 6 6 C 1.34775 * 120.00146 * 275.00764 * 5 3 2 7 7 O 1.21581 * 120.00129 * 359.71687 * 6 5 3 8 8 N 1.34775 * 119.99679 * 179.97438 * 6 5 3 9 9 C 1.39960 * 119.99910 * 174.54024 * 8 6 5 10 10 C 1.39284 * 119.94686 * 146.38403 * 9 8 6 11 11 C 1.38493 * 120.42960 * 179.97438 * 10 9 8 12 12 C 1.37681 * 120.31992 * 0.02562 * 11 10 9 13 13 C 1.40748 * 119.88409 * 0.02562 * 12 11 10 14 14 C 1.41404 * 120.20793 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99819 * 151.77271 * 14 13 12 16 16 C 1.39934 * 120.00270 * 331.76644 * 14 13 12 17 17 N 1.30827 * 120.00054 * 348.99750 * 16 14 13 18 18 Si 1.86801 * 120.00007 * 168.99129 * 16 14 13 19 19 H 1.48493 * 109.47183 * 90.00267 * 18 16 14 20 20 H 1.48498 * 109.47207 * 210.00563 * 18 16 14 21 21 H 1.48500 * 109.47125 * 330.00564 * 18 16 14 22 22 C 1.38231 * 119.94615 * 326.11252 * 9 8 6 23 23 C 1.52992 * 109.47217 * 184.99839 * 3 2 1 24 24 H 1.09004 * 109.47180 * 299.99659 * 23 3 2 25 25 C 1.53006 * 109.47410 * 179.97438 * 23 3 2 26 26 O 1.42904 * 109.47326 * 59.99695 * 23 3 2 27 27 H 1.09004 * 109.46696 * 60.00279 * 1 2 3 28 28 H 1.08998 * 109.47141 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47228 * 300.00114 * 1 2 3 30 30 H 1.09003 * 109.46982 * 239.99418 * 2 1 3 31 31 H 1.09004 * 109.46696 * 119.99721 * 2 1 3 32 32 H 0.96998 * 119.99510 * 95.00006 * 5 3 2 33 33 H 0.96997 * 120.00242 * 354.54205 * 8 6 5 34 34 H 1.08001 * 119.78635 * 359.97438 * 10 9 8 35 35 H 1.07999 * 119.83972 * 180.02562 * 11 10 9 36 36 H 1.08003 * 120.05655 * 179.97438 * 12 11 10 37 37 H 0.96996 * 120.00209 * 179.97438 * 17 16 14 38 38 H 1.08002 * 120.16166 * 359.97438 * 22 9 8 39 39 H 1.08991 * 109.47346 * 179.97438 * 25 23 3 40 40 H 1.09004 * 109.46972 * 300.00155 * 25 23 3 41 41 H 1.08999 * 109.46528 * 59.99969 * 25 23 3 42 42 H 0.96699 * 113.99859 * 179.97438 * 26 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 -0.8419 5 7 1.6524 2.0976 1.2517 6 6 0.4351 2.6644 1.3668 7 8 -0.3394 2.6366 0.4301 8 7 0.0784 3.2666 2.5186 9 6 -1.1380 3.9538 2.6014 10 6 -1.8485 3.9679 3.7993 11 6 -3.0530 4.6452 3.8926 12 6 -3.5617 5.3121 2.8008 13 6 -2.8554 5.3057 1.5834 14 6 -3.3713 5.9888 0.4579 15 1 -2.6989 6.3796 -0.2916 16 6 -4.7529 6.1584 0.3151 17 7 -5.5761 5.5082 1.0969 18 14 -5.4220 7.3134 -0.9918 19 1 -5.6344 6.5619 -2.2548 20 1 -6.7133 7.8853 -0.5328 21 1 -4.4500 8.4113 -1.2266 22 6 -1.6297 4.6222 1.4957 23 6 3.5648 1.4442 -0.1257 24 1 3.9995 0.9052 0.7162 25 6 4.0749 2.8868 -0.1263 26 8 3.9430 0.8053 -1.3467 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 2.2719 2.1232 1.9977 33 1 0.6647 3.2238 3.2901 34 1 -1.4577 3.4473 4.6611 35 1 -3.5958 4.6502 4.8262 36 1 -4.5016 5.8385 2.8781 37 1 -6.5338 5.6261 0.9981 38 1 -1.0771 4.6159 0.5678 39 1 5.1612 2.8880 -0.2154 40 1 3.6403 3.4254 -0.9684 41 1 3.7865 3.3744 0.8048 42 1 4.8982 0.7705 -1.4930 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455905991.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:03 Heat of formation + Delta-G solvation = -89.621072 kcal Electronic energy + Delta-G solvation = -23542.708508 eV Core-core repulsion = 20100.240375 eV Total energy + Delta-G solvation = -3442.468133 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.62429 -39.61017 -38.59846 -36.44428 -35.88613 -34.86486 -33.14922 -31.71759 -31.67365 -29.63296 -27.46023 -27.19379 -23.69398 -22.93203 -22.73298 -21.74703 -21.63186 -19.63949 -19.24626 -18.36979 -17.45533 -17.07654 -16.69151 -16.37192 -16.03836 -15.81287 -15.47291 -15.17690 -14.85817 -14.63678 -14.45518 -13.97194 -13.84825 -13.61118 -13.39752 -13.25803 -13.08366 -12.82902 -12.57561 -12.56533 -12.44847 -12.20433 -11.94676 -11.80758 -11.54759 -11.54022 -11.25206 -11.01745 -10.96042 -10.65458 -10.02887 -9.32937 -8.65055 -8.54160 -6.36374 0.95819 1.05290 1.35669 1.47820 1.51553 1.63077 2.21498 2.26053 2.78924 3.16826 3.48022 3.74366 3.77864 3.95227 4.09382 4.28543 4.35802 4.49113 4.51215 4.66036 4.69556 4.89668 4.91246 4.96752 5.04251 5.08178 5.10757 5.15014 5.16672 5.24006 5.28050 5.36116 5.47077 5.57530 5.76121 5.86215 6.08757 6.15133 6.22023 6.40743 6.72436 6.92407 6.97475 7.03805 7.16489 7.67934 8.39116 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018561 B = 0.003886 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.202139 B = 7202.764128 C = 7832.375603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.119 4.119 3 C 0.167 3.833 4 H 0.054 0.946 5 N -0.716 5.716 6 C 0.697 3.303 7 O -0.605 6.605 8 N -0.670 5.670 9 C 0.178 3.822 10 C -0.247 4.247 11 C -0.093 4.093 12 C -0.195 4.195 13 C 0.088 3.912 14 C -0.503 4.503 15 H 0.063 0.937 16 C 0.033 3.967 17 N -0.832 5.832 18 Si 0.983 3.017 19 H -0.268 1.268 20 H -0.259 1.259 21 H -0.259 1.259 22 C -0.232 4.232 23 C 0.110 3.890 24 H 0.092 0.908 25 C -0.184 4.184 26 O -0.577 6.577 27 H 0.028 0.972 28 H 0.055 0.945 29 H 0.034 0.966 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.413 0.587 33 H 0.418 0.582 34 H 0.132 0.868 35 H 0.123 0.877 36 H 0.105 0.895 37 H 0.286 0.714 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.040 0.960 41 H 0.069 0.931 42 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.963 -7.933 2.782 20.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.157 4.157 3 C 0.061 3.939 4 H 0.072 0.928 5 N -0.375 5.375 6 C 0.397 3.603 7 O -0.483 6.483 8 N -0.319 5.319 9 C 0.083 3.917 10 C -0.269 4.269 11 C -0.111 4.111 12 C -0.215 4.215 13 C 0.085 3.915 14 C -0.533 4.533 15 H 0.081 0.919 16 C -0.180 4.180 17 N -0.459 5.459 18 Si 0.804 3.196 19 H -0.193 1.193 20 H -0.183 1.183 21 H -0.183 1.183 22 C -0.254 4.254 23 C 0.050 3.950 24 H 0.109 0.891 25 C -0.242 4.242 26 O -0.386 6.386 27 H 0.047 0.953 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.250 0.750 33 H 0.255 0.745 34 H 0.150 0.850 35 H 0.141 0.859 36 H 0.123 0.877 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.059 0.941 41 H 0.088 0.912 42 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 17.463 -8.088 1.882 19.337 hybrid contribution 0.272 0.629 -0.103 0.693 sum 17.735 -7.459 1.779 19.322 Atomic orbital electron populations 1.21720 0.97125 1.00090 1.00846 1.21842 0.94629 0.95827 1.03411 1.20649 0.94467 0.93211 0.85589 0.92767 1.44678 1.14505 1.60833 1.17446 1.16056 0.82812 0.78372 0.83046 1.91009 1.52795 1.64519 1.39994 1.42315 1.20654 1.55018 1.13916 1.17241 0.86270 0.93375 0.94764 1.20454 0.98004 1.11217 0.97199 1.20838 0.95354 0.97215 0.97741 1.21349 1.01896 1.05688 0.92604 1.17836 0.91009 0.89409 0.93222 1.19744 0.92905 1.33891 1.06754 0.91870 1.26705 0.96658 0.95780 0.98897 1.69856 1.04816 1.34749 1.36517 0.85198 0.78308 0.78412 0.77688 1.19266 1.18320 1.18323 1.20933 1.01294 1.05383 0.97777 1.21740 0.91735 0.93234 0.88275 0.89063 1.22507 1.02580 0.96510 1.02571 1.86452 1.30717 1.80783 1.40661 0.95254 0.92605 0.94695 0.89941 0.89980 0.74981 0.74466 0.84972 0.85915 0.87721 0.90293 0.89824 0.89568 0.94112 0.91192 0.74785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.49 8.52 71.98 0.61 -3.88 16 2 C -0.12 -2.81 5.53 30.59 0.17 -2.64 16 3 C 0.17 4.01 2.05 44.99 0.09 4.10 16 4 H 0.05 1.80 7.57 -2.39 -0.02 1.78 16 5 N -0.72 -16.93 4.34 -457.83 -1.99 -18.92 16 6 C 0.70 24.92 6.85 179.06 1.23 26.15 16 7 O -0.61 -28.88 11.21 -3.97 -0.04 -28.92 16 8 N -0.67 -22.83 5.35 -317.34 -1.70 -24.53 16 9 C 0.18 8.03 6.26 38.09 0.24 8.27 16 10 C -0.25 -10.40 9.97 22.58 0.23 -10.18 16 11 C -0.09 -4.28 10.02 22.20 0.22 -4.06 16 12 C -0.20 -10.72 8.66 22.75 0.20 -10.52 16 13 C 0.09 5.17 5.55 -21.31 -0.12 5.05 16 14 C -0.50 -29.94 9.06 23.46 0.21 -29.72 16 15 H 0.06 3.73 7.87 -2.91 -0.02 3.71 16 16 C 0.03 1.79 5.25 85.25 0.45 2.24 16 17 N -0.83 -46.50 10.81 21.82 0.24 -46.26 16 18 Si 0.98 41.54 29.57 68.60 2.03 43.57 16 19 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 20 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 21 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 22 C -0.23 -12.75 8.39 22.85 0.19 -12.55 16 23 C 0.11 1.65 3.21 30.59 0.10 1.75 16 24 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 25 C -0.18 -2.68 9.38 71.98 0.67 -2.01 16 26 O -0.58 -9.01 12.56 -148.98 -1.87 -10.89 16 27 H 0.03 1.09 7.85 -2.38 -0.02 1.07 16 28 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.03 1.28 5.65 -2.39 -0.01 1.27 16 30 H 0.08 1.88 7.54 -2.39 -0.02 1.86 16 31 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.41 6.07 8.41 -92.71 -0.78 5.29 16 33 H 0.42 9.86 8.83 -92.71 -0.82 9.04 16 34 H 0.13 4.40 8.06 -2.91 -0.02 4.37 16 35 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 36 H 0.10 5.98 6.18 -2.91 -0.02 5.96 16 37 H 0.29 14.41 8.30 -92.71 -0.77 13.64 16 38 H 0.08 4.91 6.44 -2.91 -0.02 4.89 16 39 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.07 1.00 7.45 -2.39 -0.02 0.98 16 42 H 0.40 2.29 9.08 -74.06 -0.67 1.62 16 Total: -1.00 -77.98 341.86 -0.05 -78.03 By element: Atomic # 1 Polarization: 37.13 SS G_CDS: -1.21 Total: 35.92 kcal Atomic # 6 Polarization: -32.49 SS G_CDS: 4.49 Total: -28.00 kcal Atomic # 7 Polarization: -86.26 SS G_CDS: -3.45 Total: -89.71 kcal Atomic # 8 Polarization: -37.89 SS G_CDS: -1.92 Total: -39.81 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -77.98 -0.05 -78.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455905991.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.590 kcal (2) G-P(sol) polarization free energy of solvation -77.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds