Wall clock time and date at job start Tue Mar 31 2020 06:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46771 * 2 1 4 4 H 1.09000 * 109.47287 * 55.00220 * 3 2 1 5 5 N 1.46497 * 109.47524 * 294.99806 * 3 2 1 6 6 C 1.34772 * 120.00120 * 154.99595 * 5 3 2 7 7 O 1.21589 * 120.00310 * 0.02562 * 6 5 3 8 8 N 1.34776 * 120.00082 * 180.02562 * 6 5 3 9 9 C 1.39954 * 120.00177 * 174.82132 * 8 6 5 10 10 C 1.39285 * 119.94775 * 146.38366 * 9 8 6 11 11 C 1.38491 * 120.43509 * 179.97438 * 10 9 8 12 12 C 1.37688 * 120.31348 * 0.02562 * 11 10 9 13 13 C 1.40743 * 119.88597 * 359.97438 * 12 11 10 14 14 C 1.41409 * 120.20694 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99417 * 151.78901 * 14 13 12 16 16 C 1.39931 * 120.00373 * 331.79506 * 14 13 12 17 17 N 1.30832 * 119.99966 * 348.98752 * 16 14 13 18 18 Si 1.86794 * 120.00035 * 168.98759 * 16 14 13 19 19 H 1.48501 * 109.47542 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47193 * 120.00186 * 18 16 14 21 21 H 1.48504 * 109.47029 * 239.99757 * 18 16 14 22 22 C 1.38232 * 119.94751 * 326.10722 * 9 8 6 23 23 C 1.53003 * 109.47004 * 174.99718 * 3 2 1 24 24 H 1.09000 * 109.46689 * 60.00135 * 23 3 2 25 25 C 1.53002 * 109.47356 * 179.97438 * 23 3 2 26 26 O 1.42893 * 109.47494 * 300.00368 * 23 3 2 27 27 H 1.09000 * 109.46990 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47025 * 60.00025 * 1 2 3 29 29 H 1.09008 * 109.46812 * 299.99864 * 1 2 3 30 30 H 1.08996 * 109.47268 * 119.99497 * 2 1 3 31 31 H 1.08998 * 109.47318 * 240.00192 * 2 1 3 32 32 H 0.96996 * 119.99686 * 335.01006 * 5 3 2 33 33 H 0.97000 * 119.99810 * 354.83101 * 8 6 5 34 34 H 1.08005 * 119.78618 * 359.97438 * 10 9 8 35 35 H 1.07990 * 119.84615 * 180.02562 * 11 10 9 36 36 H 1.08002 * 120.05524 * 179.97438 * 12 11 10 37 37 H 0.96995 * 120.00047 * 180.02562 * 17 16 14 38 38 H 1.07997 * 120.16174 * 0.02562 * 22 9 8 39 39 H 1.08996 * 109.46521 * 60.00413 * 25 23 3 40 40 H 1.08993 * 109.47324 * 180.02562 * 25 23 3 41 41 H 1.09000 * 109.47164 * 300.00678 * 25 23 3 42 42 H 0.96701 * 113.99921 * 300.00083 * 26 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 7 1.6524 2.0976 -1.2518 6 6 1.5255 3.4384 -1.2995 7 8 1.7330 4.1046 -0.3037 8 7 1.1685 4.0410 -2.4510 9 6 0.9310 5.4200 -2.4748 10 6 1.2478 6.1606 -3.6112 11 6 1.0166 7.5256 -3.6459 12 6 0.4710 8.1660 -2.5560 13 6 0.1459 7.4307 -1.4008 14 6 -0.4142 8.0817 -0.2773 15 1 -1.0640 7.5386 0.3930 16 6 -0.1268 9.4293 -0.0340 17 7 0.8195 10.0287 -0.7101 18 14 -1.0940 10.3726 1.2558 19 1 -2.1015 9.4740 1.8745 20 1 -0.1668 10.8724 2.3026 21 1 -1.7832 11.5217 0.6155 22 6 0.3773 6.0441 -1.3727 23 6 3.5648 1.4444 0.1258 24 1 3.9994 0.9054 -0.7160 25 6 4.0749 2.8869 0.1252 26 8 3.9429 0.8056 1.3467 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8901 30 1 1.8934 -0.5137 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.4870 1.5662 -2.0462 33 1 1.0760 3.5188 -3.2632 34 1 1.6765 5.6671 -4.4709 35 1 1.2654 8.0905 -4.5321 36 1 0.2928 9.2308 -2.5875 37 1 1.0190 10.9628 -0.5412 38 1 0.1276 5.4701 -0.4926 39 1 3.6402 3.4262 0.9667 40 1 5.1611 2.8883 0.2143 41 1 3.7865 3.3739 -0.8064 42 1 3.5907 1.2327 2.1396 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455905992.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:07 Heat of formation + Delta-G solvation = -68.470997 kcal Electronic energy + Delta-G solvation = -23625.843718 eV Core-core repulsion = 20184.292721 eV Total energy + Delta-G solvation = -3441.550997 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.30304 -38.30572 -37.03998 -35.23015 -34.34324 -33.04761 -32.10068 -30.44943 -29.76963 -27.96502 -26.31782 -25.24666 -22.17350 -22.10738 -20.99197 -20.78411 -20.05661 -18.05240 -17.56138 -16.74639 -16.42556 -15.52060 -15.14801 -14.92943 -14.60746 -14.39371 -14.16616 -14.03598 -13.72953 -13.04565 -12.86523 -12.74369 -12.40159 -12.14386 -12.02189 -11.70391 -11.58779 -11.41365 -11.25050 -11.12330 -11.06806 -10.96104 -10.58340 -10.46220 -10.19899 -10.10826 -9.69460 -9.54402 -9.18913 -8.86993 -8.77575 -7.37576 -6.82815 -6.62424 -4.30763 2.75524 2.87964 3.03442 3.12630 3.18563 3.22883 3.72142 4.00929 4.25158 4.53962 4.65107 4.72391 4.80144 4.91949 5.17408 5.30013 5.38498 5.61845 5.63870 5.75318 5.80439 5.91418 5.97571 6.10823 6.17737 6.26260 6.41661 6.48599 6.62324 6.81032 6.83769 7.07832 7.13538 7.29446 7.38514 7.53681 7.72819 7.85264 8.03379 8.14475 8.29760 8.46481 8.71372 8.94600 9.01359 9.08268 10.30757 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017760 B = 0.003989 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.202366 B = 7017.425558 C = 7561.091361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C 0.135 3.865 4 H 0.091 0.909 5 N -0.742 5.742 6 C 0.696 3.304 7 O -0.558 6.558 8 N -0.682 5.682 9 C 0.167 3.833 10 C -0.260 4.260 11 C -0.094 4.094 12 C -0.169 4.169 13 C 0.119 3.881 14 C -0.457 4.457 15 H 0.076 0.924 16 C 0.073 3.927 17 N -0.802 5.802 18 Si 0.910 3.090 19 H -0.262 1.262 20 H -0.275 1.275 21 H -0.273 1.273 22 C -0.206 4.206 23 C 0.092 3.908 24 H 0.093 0.907 25 C -0.175 4.175 26 O -0.564 6.564 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.392 0.608 33 H 0.393 0.607 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.121 0.879 37 H 0.278 0.722 38 H 0.107 0.893 39 H 0.069 0.931 40 H 0.050 0.950 41 H 0.068 0.932 42 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.306 -15.650 -0.986 15.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C 0.029 3.971 4 H 0.109 0.891 5 N -0.400 5.400 6 C 0.397 3.603 7 O -0.433 6.433 8 N -0.329 5.329 9 C 0.075 3.925 10 C -0.282 4.282 11 C -0.113 4.113 12 C -0.189 4.189 13 C 0.116 3.884 14 C -0.487 4.487 15 H 0.094 0.906 16 C -0.143 4.143 17 N -0.428 5.428 18 Si 0.735 3.265 19 H -0.185 1.185 20 H -0.200 1.200 21 H -0.198 1.198 22 C -0.228 4.228 23 C 0.032 3.968 24 H 0.111 0.889 25 C -0.233 4.233 26 O -0.368 6.368 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.226 0.774 33 H 0.226 0.774 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.139 0.861 37 H 0.089 0.911 38 H 0.125 0.875 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 1.929 -15.229 -0.430 15.356 hybrid contribution -0.633 0.416 0.008 0.758 sum 1.295 -14.812 -0.423 14.875 Atomic orbital electron populations 1.21769 0.95296 1.01403 1.02467 1.21765 0.96314 0.95106 1.03302 1.21552 0.94716 0.93129 0.87734 0.89136 1.45104 1.76051 1.05470 1.13384 1.15950 0.78362 0.81619 0.84354 1.91004 1.55370 1.62979 1.33936 1.42612 1.72008 1.08316 1.09938 1.17212 0.99335 0.79648 0.96302 1.20026 1.15654 0.94377 0.98150 1.20465 1.00048 0.93170 0.97637 1.21399 1.04890 1.00361 0.92222 1.17513 0.88543 0.90241 0.92149 1.19566 1.26031 0.94670 1.08482 0.90614 1.25868 0.93886 0.97827 0.96698 1.69814 1.24013 1.12220 1.36753 0.86236 0.80264 0.79559 0.80470 1.18529 1.20039 1.19849 1.20986 1.08201 0.95735 0.97848 1.22358 0.93393 0.93908 0.87129 0.88891 1.22493 1.00341 0.95919 1.04522 1.86536 1.76971 1.57377 1.15942 0.92744 0.92543 0.92527 0.89769 0.91669 0.77438 0.77383 0.89428 0.89092 0.86142 0.91144 0.87464 0.91184 0.93115 0.91277 0.77657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.80 37.16 0.36 -0.96 16 2 C -0.13 -1.09 5.40 -26.73 -0.14 -1.23 16 3 C 0.13 1.51 2.02 -67.93 -0.14 1.37 16 4 H 0.09 1.21 7.58 -51.93 -0.39 0.81 16 5 N -0.74 -8.90 4.42 -58.68 -0.26 -9.16 16 6 C 0.70 11.99 6.65 -86.92 -0.58 11.41 16 7 O -0.56 -12.08 11.17 5.29 0.06 -12.02 16 8 N -0.68 -11.84 5.35 -14.27 -0.08 -11.92 16 9 C 0.17 3.75 6.26 -83.76 -0.52 3.23 16 10 C -0.26 -5.71 9.97 -39.10 -0.39 -6.10 16 11 C -0.09 -2.20 10.02 -39.69 -0.40 -2.60 16 12 C -0.17 -4.45 8.66 -38.84 -0.34 -4.79 16 13 C 0.12 3.27 5.55 -106.85 -0.59 2.67 16 14 C -0.46 -12.63 9.06 -37.74 -0.34 -12.98 16 15 H 0.08 2.04 7.87 -52.49 -0.41 1.63 16 16 C 0.07 1.91 5.25 -17.34 -0.09 1.82 16 17 N -0.80 -21.39 10.81 55.55 0.60 -20.79 16 18 Si 0.91 19.38 29.57 -169.99 -5.03 14.35 16 19 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 20 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 21 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 22 C -0.21 -5.32 8.39 -38.69 -0.32 -5.64 16 23 C 0.09 1.07 3.35 -26.73 -0.09 0.98 16 24 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 25 C -0.18 -2.54 8.06 37.16 0.30 -2.24 16 26 O -0.56 -6.21 12.58 -35.23 -0.44 -6.65 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.52 7.75 -51.93 -0.40 0.12 16 29 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 30 H 0.08 0.71 7.54 -51.93 -0.39 0.32 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.39 3.52 8.62 -40.82 -0.35 3.17 16 33 H 0.39 5.21 8.83 -40.82 -0.36 4.85 16 34 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 35 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 36 H 0.12 3.27 6.18 -52.49 -0.32 2.95 16 37 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 38 H 0.11 2.87 6.44 -52.49 -0.34 2.53 16 39 H 0.07 1.13 7.53 -51.93 -0.39 0.74 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 1.16 5.78 -51.93 -0.30 0.86 16 42 H 0.38 3.14 9.05 45.56 0.41 3.55 16 LS Contribution 341.95 15.07 5.15 5.15 Total: -1.00 -31.58 341.95 -8.63 -40.21 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: -5.35 Total: 15.89 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -3.28 Total: -15.06 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: 0.26 Total: -41.86 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.38 Total: -18.68 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.35 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.58 -8.63 -40.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455905992.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.266 kcal (2) G-P(sol) polarization free energy of solvation -31.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds