Wall clock time and date at job start Tue Mar 31 2020 06:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46771 * 2 1 4 4 H 1.09000 * 109.47287 * 55.00220 * 3 2 1 5 5 N 1.46497 * 109.47524 * 294.99806 * 3 2 1 6 6 C 1.34772 * 120.00120 * 154.99595 * 5 3 2 7 7 O 1.21589 * 120.00310 * 0.02562 * 6 5 3 8 8 N 1.34776 * 120.00082 * 180.02562 * 6 5 3 9 9 C 1.39954 * 120.00177 * 174.82132 * 8 6 5 10 10 C 1.39285 * 119.94775 * 146.38366 * 9 8 6 11 11 C 1.38491 * 120.43509 * 179.97438 * 10 9 8 12 12 C 1.37688 * 120.31348 * 0.02562 * 11 10 9 13 13 C 1.40743 * 119.88597 * 359.97438 * 12 11 10 14 14 C 1.41409 * 120.20694 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99417 * 151.78901 * 14 13 12 16 16 C 1.39931 * 120.00373 * 331.79506 * 14 13 12 17 17 N 1.30832 * 119.99966 * 348.98752 * 16 14 13 18 18 Si 1.86794 * 120.00035 * 168.98759 * 16 14 13 19 19 H 1.48501 * 109.47542 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47193 * 120.00186 * 18 16 14 21 21 H 1.48504 * 109.47029 * 239.99757 * 18 16 14 22 22 C 1.38232 * 119.94751 * 326.10722 * 9 8 6 23 23 C 1.53003 * 109.47004 * 174.99718 * 3 2 1 24 24 H 1.09000 * 109.46689 * 60.00135 * 23 3 2 25 25 C 1.53002 * 109.47356 * 179.97438 * 23 3 2 26 26 O 1.42893 * 109.47494 * 300.00368 * 23 3 2 27 27 H 1.09000 * 109.46990 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47025 * 60.00025 * 1 2 3 29 29 H 1.09008 * 109.46812 * 299.99864 * 1 2 3 30 30 H 1.08996 * 109.47268 * 119.99497 * 2 1 3 31 31 H 1.08998 * 109.47318 * 240.00192 * 2 1 3 32 32 H 0.96996 * 119.99686 * 335.01006 * 5 3 2 33 33 H 0.97000 * 119.99810 * 354.83101 * 8 6 5 34 34 H 1.08005 * 119.78618 * 359.97438 * 10 9 8 35 35 H 1.07990 * 119.84615 * 180.02562 * 11 10 9 36 36 H 1.08002 * 120.05524 * 179.97438 * 12 11 10 37 37 H 0.96995 * 120.00047 * 180.02562 * 17 16 14 38 38 H 1.07997 * 120.16174 * 0.02562 * 22 9 8 39 39 H 1.08996 * 109.46521 * 60.00413 * 25 23 3 40 40 H 1.08993 * 109.47324 * 180.02562 * 25 23 3 41 41 H 1.09000 * 109.47164 * 300.00678 * 25 23 3 42 42 H 0.96701 * 113.99921 * 300.00083 * 26 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 7 1.6524 2.0976 -1.2518 6 6 1.5255 3.4384 -1.2995 7 8 1.7330 4.1046 -0.3037 8 7 1.1685 4.0410 -2.4510 9 6 0.9310 5.4200 -2.4748 10 6 1.2478 6.1606 -3.6112 11 6 1.0166 7.5256 -3.6459 12 6 0.4710 8.1660 -2.5560 13 6 0.1459 7.4307 -1.4008 14 6 -0.4142 8.0817 -0.2773 15 1 -1.0640 7.5386 0.3930 16 6 -0.1268 9.4293 -0.0340 17 7 0.8195 10.0287 -0.7101 18 14 -1.0940 10.3726 1.2558 19 1 -2.1015 9.4740 1.8745 20 1 -0.1668 10.8724 2.3026 21 1 -1.7832 11.5217 0.6155 22 6 0.3773 6.0441 -1.3727 23 6 3.5648 1.4444 0.1258 24 1 3.9994 0.9054 -0.7160 25 6 4.0749 2.8869 0.1252 26 8 3.9429 0.8056 1.3467 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8901 30 1 1.8934 -0.5137 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.4870 1.5662 -2.0462 33 1 1.0760 3.5188 -3.2632 34 1 1.6765 5.6671 -4.4709 35 1 1.2654 8.0905 -4.5321 36 1 0.2928 9.2308 -2.5875 37 1 1.0190 10.9628 -0.5412 38 1 0.1276 5.4701 -0.4926 39 1 3.6402 3.4262 0.9667 40 1 5.1611 2.8883 0.2143 41 1 3.7865 3.3739 -0.8064 42 1 3.5907 1.2327 2.1396 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455905992.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:06 Heat of formation + Delta-G solvation = -91.588372 kcal Electronic energy + Delta-G solvation = -23626.846162 eV Core-core repulsion = 20184.292721 eV Total energy + Delta-G solvation = -3442.553441 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.65591 -39.66941 -38.55223 -36.34925 -36.00483 -34.81273 -33.12457 -31.72562 -31.55340 -29.64486 -27.40149 -27.17855 -23.67893 -22.99239 -22.73755 -21.96082 -21.65102 -19.60383 -19.20482 -17.75413 -17.67960 -17.27769 -16.53598 -16.46592 -16.32163 -15.61078 -15.42788 -15.14747 -14.85872 -14.75304 -14.50859 -13.95029 -13.76483 -13.59563 -13.34094 -13.08431 -12.99228 -12.84397 -12.61285 -12.54201 -12.25278 -12.18897 -12.05682 -11.92102 -11.75240 -11.54207 -11.25239 -11.19374 -11.00001 -10.64013 -9.92746 -9.33234 -8.64895 -8.54218 -6.36490 0.95231 1.05347 1.36129 1.48656 1.51507 1.70228 2.21298 2.25435 2.78700 3.23946 3.48558 3.71619 3.76967 3.90362 4.08374 4.30016 4.36290 4.48740 4.52488 4.65497 4.67348 4.84089 4.89791 5.03228 5.07154 5.10931 5.13824 5.15168 5.17454 5.23079 5.30212 5.37060 5.42215 5.58198 5.75820 5.86166 6.08750 6.15105 6.22485 6.40487 6.72410 6.72550 6.97471 7.03621 7.15861 7.67522 8.39124 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017760 B = 0.003989 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.202366 B = 7017.425558 C = 7561.091361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C 0.136 3.864 4 H 0.064 0.936 5 N -0.717 5.717 6 C 0.694 3.306 7 O -0.605 6.605 8 N -0.672 5.672 9 C 0.177 3.823 10 C -0.248 4.248 11 C -0.093 4.093 12 C -0.195 4.195 13 C 0.087 3.913 14 C -0.501 4.501 15 H 0.064 0.936 16 C 0.032 3.968 17 N -0.833 5.833 18 Si 0.984 3.016 19 H -0.263 1.263 20 H -0.267 1.267 21 H -0.258 1.258 22 C -0.230 4.230 23 C 0.104 3.896 24 H 0.110 0.890 25 C -0.170 4.170 26 O -0.565 6.565 27 H 0.072 0.928 28 H 0.050 0.950 29 H 0.040 0.960 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.413 0.587 33 H 0.417 0.583 34 H 0.131 0.869 35 H 0.122 0.878 36 H 0.104 0.896 37 H 0.286 0.714 38 H 0.086 0.914 39 H 0.043 0.957 40 H 0.055 0.945 41 H 0.045 0.955 42 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.739 -17.747 -2.251 17.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C 0.030 3.970 4 H 0.083 0.917 5 N -0.375 5.375 6 C 0.395 3.605 7 O -0.484 6.484 8 N -0.320 5.320 9 C 0.083 3.917 10 C -0.270 4.270 11 C -0.112 4.112 12 C -0.215 4.215 13 C 0.085 3.915 14 C -0.531 4.531 15 H 0.082 0.918 16 C -0.181 4.181 17 N -0.460 5.460 18 Si 0.805 3.195 19 H -0.186 1.186 20 H -0.192 1.192 21 H -0.182 1.182 22 C -0.252 4.252 23 C 0.044 3.956 24 H 0.128 0.872 25 C -0.227 4.227 26 O -0.371 6.371 27 H 0.091 0.909 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.250 0.750 33 H 0.254 0.746 34 H 0.149 0.851 35 H 0.140 0.860 36 H 0.122 0.878 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 2.365 -17.411 -1.740 17.657 hybrid contribution -0.685 0.914 0.338 1.191 sum 1.680 -16.497 -1.403 16.642 Atomic orbital electron populations 1.21769 0.95400 1.02271 1.01480 1.21712 0.96043 0.92817 1.04734 1.21634 0.94633 0.94452 0.86283 0.91738 1.44859 1.74434 1.03543 1.14682 1.16138 0.77940 0.82958 0.83457 1.90995 1.57230 1.64546 1.35594 1.42356 1.71750 1.06668 1.11267 1.17241 0.97248 0.81933 0.95271 1.20454 1.13696 0.93860 0.98951 1.20833 0.98546 0.94230 0.97615 1.21345 1.07120 0.99792 0.93241 1.17847 0.89496 0.91341 0.92860 1.19763 1.27691 0.96264 1.09398 0.91814 1.26705 0.94486 0.98036 0.98834 1.69866 1.25003 1.12902 1.38224 0.85142 0.78667 0.78103 0.77630 1.18634 1.19200 1.18233 1.20927 1.10171 0.95403 0.98674 1.22230 0.93268 0.92035 0.88074 0.87175 1.22418 1.00564 0.97649 1.02090 1.86514 1.77111 1.57241 1.16236 0.90946 0.93042 0.94065 0.89005 0.89456 0.75034 0.74566 0.85102 0.86026 0.87786 0.90329 0.89624 0.93792 0.92551 0.93612 0.76392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.80 71.98 0.71 -1.61 16 2 C -0.12 -1.64 5.40 30.60 0.17 -1.48 16 3 C 0.14 2.85 2.02 44.99 0.09 2.94 16 4 H 0.06 1.74 7.58 -2.39 -0.02 1.72 16 5 N -0.72 -15.96 4.42 -457.82 -2.02 -17.99 16 6 C 0.69 23.65 6.65 179.06 1.19 24.84 16 7 O -0.61 -27.22 11.17 -4.00 -0.04 -27.26 16 8 N -0.67 -22.33 5.35 -317.33 -1.70 -24.03 16 9 C 0.18 7.87 6.26 38.09 0.24 8.11 16 10 C -0.25 -10.33 9.97 22.58 0.23 -10.11 16 11 C -0.09 -4.28 10.02 22.20 0.22 -4.06 16 12 C -0.19 -10.59 8.66 22.75 0.20 -10.39 16 13 C 0.09 5.06 5.55 -21.31 -0.12 4.94 16 14 C -0.50 -29.36 9.06 23.46 0.21 -29.14 16 15 H 0.06 3.70 7.87 -2.91 -0.02 3.68 16 16 C 0.03 1.75 5.25 85.25 0.45 2.20 16 17 N -0.83 -46.00 10.81 21.82 0.24 -45.76 16 18 Si 0.98 40.94 29.57 68.60 2.03 42.97 16 19 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 20 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 21 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 22 C -0.23 -12.37 8.39 22.85 0.19 -12.18 16 23 C 0.10 2.24 3.35 30.60 0.10 2.34 16 24 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 25 C -0.17 -4.92 8.06 71.98 0.58 -4.34 16 26 O -0.56 -11.37 12.58 -148.98 -1.87 -13.25 16 27 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.05 0.83 7.75 -2.39 -0.02 0.81 16 29 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.09 1.26 7.54 -2.39 -0.02 1.24 16 31 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.41 6.05 8.62 -92.71 -0.80 5.25 16 33 H 0.42 9.73 8.83 -92.71 -0.82 8.91 16 34 H 0.13 4.33 8.06 -2.91 -0.02 4.31 16 35 H 0.12 4.75 8.06 -2.92 -0.02 4.72 16 36 H 0.10 5.90 6.18 -2.91 -0.02 5.88 16 37 H 0.29 14.21 8.30 -92.71 -0.77 13.44 16 38 H 0.09 4.89 6.44 -2.91 -0.02 4.87 16 39 H 0.04 1.48 7.53 -2.39 -0.02 1.46 16 40 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.04 1.53 5.78 -2.39 -0.01 1.52 16 42 H 0.39 6.06 9.05 -74.06 -0.67 5.39 16 Total: -1.00 -73.29 341.95 -0.15 -73.44 By element: Atomic # 1 Polarization: 41.05 SS G_CDS: -1.23 Total: 39.82 kcal Atomic # 6 Polarization: -32.40 SS G_CDS: 4.45 Total: -27.95 kcal Atomic # 7 Polarization: -84.30 SS G_CDS: -3.49 Total: -87.78 kcal Atomic # 8 Polarization: -38.59 SS G_CDS: -1.92 Total: -40.51 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -73.29 -0.15 -73.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455905992.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.146 kcal (2) G-P(sol) polarization free energy of solvation -73.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds