Wall clock time and date at job start Tue Mar 31 2020 06:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47185 * 2 1 4 4 H 1.09002 * 109.47038 * 305.00476 * 3 2 1 5 5 O 1.42902 * 109.47145 * 65.00048 * 3 2 1 6 6 C 1.53002 * 109.47344 * 185.00322 * 3 2 1 7 7 C 1.52993 * 109.47345 * 175.00017 * 6 3 2 8 8 N 1.46500 * 109.47254 * 179.97438 * 7 6 3 9 9 C 1.34780 * 119.99828 * 180.02562 * 8 7 6 10 10 O 1.21579 * 120.00013 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99660 * 180.02562 * 9 8 7 12 12 C 1.39954 * 119.99746 * 174.84856 * 11 9 8 13 13 C 1.39283 * 119.94485 * 145.76752 * 12 11 9 14 14 C 1.38494 * 120.42916 * 180.02562 * 13 12 11 15 15 C 1.37681 * 120.32165 * 359.97438 * 14 13 12 16 16 C 1.40749 * 119.88060 * 359.97438 * 15 14 13 17 17 C 1.41411 * 120.20834 * 179.97438 * 16 15 14 18 18 H 1.07995 * 119.99793 * 205.18267 * 17 16 15 19 19 C 1.39931 * 119.99796 * 25.18576 * 17 16 15 20 20 N 1.30825 * 120.00393 * 16.78152 * 19 17 16 21 21 Si 1.86806 * 119.99990 * 196.78392 * 19 17 16 22 22 H 1.48501 * 109.47263 * 89.99387 * 21 19 17 23 23 H 1.48495 * 109.47165 * 210.00014 * 21 19 17 24 24 H 1.48507 * 109.46714 * 329.99945 * 21 19 17 25 25 C 1.38231 * 119.94650 * 325.49440 * 12 11 9 26 26 H 1.09005 * 109.47104 * 299.99675 * 1 2 3 27 27 H 1.09003 * 109.47434 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47927 * 59.99915 * 1 2 3 29 29 H 1.08995 * 109.47284 * 120.00351 * 2 1 3 30 30 H 1.09005 * 109.47104 * 240.00325 * 2 1 3 31 31 H 0.96701 * 113.99267 * 60.00366 * 5 3 2 32 32 H 1.09004 * 109.46988 * 295.00240 * 6 3 2 33 33 H 1.09005 * 109.46794 * 54.99928 * 6 3 2 34 34 H 1.09004 * 109.47260 * 300.00056 * 7 6 3 35 35 H 1.09006 * 109.47348 * 59.99644 * 7 6 3 36 36 H 0.96994 * 119.99792 * 0.02562 * 8 7 6 37 37 H 0.96998 * 119.99954 * 354.84904 * 11 9 8 38 38 H 1.07998 * 119.78834 * 359.97438 * 13 12 11 39 39 H 1.07997 * 119.84302 * 180.02562 * 14 13 12 40 40 H 1.07996 * 120.06263 * 179.97438 * 15 14 13 41 41 H 0.97007 * 120.00264 * 180.02562 * 20 19 17 42 42 H 1.08002 * 120.16105 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 8 1.6619 2.0814 1.2211 6 6 3.5648 1.4444 -0.1258 7 6 4.0644 2.8850 -0.2512 8 7 5.5245 2.8868 -0.3710 9 6 6.1892 4.0529 -0.4933 10 8 5.5770 5.1033 -0.5047 11 7 7.5324 4.0545 -0.6041 12 6 8.2137 5.2542 -0.8391 13 6 9.4751 5.4576 -0.2845 14 6 10.1579 6.6412 -0.5101 15 6 9.5969 7.6303 -1.2863 16 6 8.3234 7.4384 -1.8542 17 6 7.7404 8.4499 -2.6521 18 1 6.6665 8.5086 -2.7499 19 6 8.5550 9.3747 -3.3149 20 7 9.8296 9.1271 -3.4749 21 14 7.8224 10.9628 -3.9713 22 1 7.9038 12.0146 -2.9262 23 1 8.5800 11.3982 -5.1719 24 1 6.4009 10.7379 -4.3376 25 6 7.6361 6.2331 -1.6259 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3635 0.5138 -0.8899 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 2.0142 1.6542 2.0138 32 1 4.0030 0.9836 0.7595 33 1 3.8569 0.8801 -1.0115 34 1 3.6263 3.3458 -1.1365 35 1 3.7722 3.4494 0.6344 36 1 6.0129 2.0488 -0.3624 37 1 8.0269 3.2242 -0.5210 38 1 9.9232 4.6878 0.3261 39 1 11.1357 6.7887 -0.0758 40 1 10.1329 8.5518 -1.4592 41 1 10.3944 9.7684 -3.9340 42 1 6.6601 6.0743 -2.0603 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455906196.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:19 Heat of formation + Delta-G solvation = -76.815122 kcal Electronic energy + Delta-G solvation = -22376.588117 eV Core-core repulsion = 18934.675292 eV Total energy + Delta-G solvation = -3441.912825 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 4.24 seconds Orbital eigenvalues (eV) -39.89708 -38.54864 -37.27936 -34.95965 -34.26552 -33.19127 -32.95669 -30.87075 -29.75036 -27.94732 -25.76920 -25.20178 -22.52199 -21.77526 -21.39450 -20.78207 -19.96316 -17.97676 -17.56250 -16.69412 -16.23959 -15.93892 -15.40426 -15.23778 -14.82720 -14.50002 -14.24719 -14.00939 -13.92385 -13.35251 -12.95417 -12.81323 -12.79439 -12.34961 -12.11264 -11.83294 -11.61169 -11.49677 -11.35529 -11.10415 -11.08572 -11.07353 -10.84873 -10.40789 -10.28497 -10.11406 -9.63778 -9.42804 -9.07025 -8.94905 -8.83740 -7.37933 -6.82583 -6.64290 -4.27116 2.78511 2.92416 3.09649 3.13586 3.18988 3.27497 3.79024 4.01527 4.03205 4.31519 4.50662 4.63333 4.71668 4.76609 4.84026 4.94220 5.14574 5.31157 5.42396 5.45602 5.57431 5.72222 5.78384 5.89699 5.94993 5.96270 6.29788 6.45988 6.62216 6.85056 6.86730 7.10944 7.15945 7.31030 7.35335 7.41822 7.75705 7.90063 8.06326 8.17975 8.31676 8.50844 8.73446 8.97044 9.04412 9.12107 10.27939 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021752 B = 0.002803 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.920808 B = 9986.726951 C =10999.118121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.155 4.155 3 C 0.109 3.891 4 H 0.103 0.897 5 O -0.557 6.557 6 C -0.163 4.163 7 C 0.143 3.857 8 N -0.754 5.754 9 C 0.697 3.303 10 O -0.565 6.565 11 N -0.682 5.682 12 C 0.169 3.831 13 C -0.264 4.264 14 C -0.092 4.092 15 C -0.174 4.174 16 C 0.120 3.880 17 C -0.458 4.458 18 H 0.078 0.922 19 C 0.075 3.925 20 N -0.797 5.797 21 Si 0.909 3.091 22 H -0.268 1.268 23 H -0.279 1.279 24 H -0.262 1.262 25 C -0.209 4.209 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.373 0.627 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.391 0.609 37 H 0.393 0.607 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.119 0.881 41 H 0.279 0.721 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.993 -17.514 5.540 20.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.193 4.193 3 C 0.049 3.951 4 H 0.120 0.880 5 O -0.362 6.362 6 C -0.201 4.201 7 C 0.018 3.982 8 N -0.411 5.411 9 C 0.397 3.603 10 O -0.440 6.440 11 N -0.329 5.329 12 C 0.077 3.923 13 C -0.285 4.285 14 C -0.111 4.111 15 C -0.193 4.193 16 C 0.117 3.883 17 C -0.488 4.488 18 H 0.096 0.904 19 C -0.142 4.142 20 N -0.422 5.422 21 Si 0.733 3.267 22 H -0.193 1.193 23 H -0.204 1.204 24 H -0.186 1.186 25 C -0.231 4.231 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.220 0.780 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.224 0.776 37 H 0.226 0.774 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.137 0.863 41 H 0.090 0.910 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.718 -16.043 4.979 19.926 hybrid contribution 0.661 -0.674 0.023 0.944 sum -10.057 -16.717 5.002 20.140 Atomic orbital electron populations 1.21711 0.95042 1.01418 1.02589 1.22236 0.97245 0.97069 1.02738 1.21913 0.92189 0.92835 0.88175 0.87961 1.86640 1.76831 1.57205 1.15540 1.22537 0.97050 0.97272 1.03286 1.21062 0.78610 0.95783 1.02726 1.45142 1.07515 1.07279 1.81156 1.15982 0.81982 0.84058 0.78292 1.90984 1.67038 1.29928 1.56032 1.42591 1.04820 1.10089 1.75373 1.17226 0.92186 0.85411 0.97487 1.20003 0.97277 1.00178 1.11079 1.20441 0.97724 0.93904 0.99050 1.21335 0.98046 0.99411 1.00556 1.17501 0.91229 0.90341 0.89264 1.19588 0.94678 1.09672 1.24813 0.90375 1.25898 0.94565 0.99153 0.94554 1.69833 1.06011 1.34302 1.32104 0.86309 0.80253 0.81575 0.78548 1.19294 1.20415 1.18610 1.21001 1.02132 0.94672 1.05303 0.92002 0.92915 0.92617 0.91666 0.91010 0.77992 0.91010 0.90356 0.91718 0.91031 0.77638 0.77372 0.89415 0.89091 0.86343 0.91026 0.87568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.81 37.15 0.36 -0.57 16 2 C -0.16 -0.88 5.61 -26.73 -0.15 -1.03 16 3 C 0.11 0.79 2.97 -26.73 -0.08 0.71 16 4 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 5 O -0.56 -4.83 12.41 -35.23 -0.44 -5.27 16 6 C -0.16 -1.18 5.01 -26.73 -0.13 -1.31 16 7 C 0.14 1.68 5.57 -4.04 -0.02 1.66 16 8 N -0.75 -9.81 5.56 -65.22 -0.36 -10.17 16 9 C 0.70 13.17 8.29 -86.91 -0.72 12.45 16 10 O -0.56 -13.59 14.10 5.30 0.07 -13.52 16 11 N -0.68 -12.65 5.34 -14.27 -0.08 -12.72 16 12 C 0.17 3.98 6.25 -83.76 -0.52 3.45 16 13 C -0.26 -5.97 9.97 -39.10 -0.39 -6.36 16 14 C -0.09 -2.21 10.02 -39.69 -0.40 -2.61 16 15 C -0.17 -4.68 8.69 -38.84 -0.34 -5.02 16 16 C 0.12 3.39 5.57 -106.84 -0.59 2.80 16 17 C -0.46 -12.92 9.05 -37.74 -0.34 -13.27 16 18 H 0.08 2.19 7.90 -52.49 -0.41 1.77 16 19 C 0.08 1.97 5.16 -17.35 -0.09 1.88 16 20 N -0.80 -21.18 10.94 55.55 0.61 -20.57 16 21 Si 0.91 19.57 29.59 -169.99 -5.03 14.54 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 24 H -0.26 -5.64 7.11 56.52 0.40 -5.23 16 25 C -0.21 -5.64 8.39 -38.69 -0.32 -5.97 16 26 H 0.06 0.42 7.82 -51.93 -0.41 0.02 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.37 1.96 9.04 45.56 0.41 2.37 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.98 7.82 -51.93 -0.41 0.57 16 36 H 0.39 3.65 8.49 -40.82 -0.35 3.30 16 37 H 0.39 5.56 8.84 -40.82 -0.36 5.20 16 38 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 39 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 40 H 0.12 3.26 6.16 -52.49 -0.32 2.94 16 41 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 42 H 0.11 2.98 6.48 -52.49 -0.34 2.64 16 LS Contribution 351.72 15.07 5.30 5.30 Total: -1.00 -33.75 351.72 -9.21 -42.96 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -5.55 Total: 12.61 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -3.74 Total: -13.17 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: 0.17 Total: -43.46 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.36 Total: -18.79 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.54 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.75 -9.21 -42.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455906196.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.854 kcal (2) G-P(sol) polarization free energy of solvation -33.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.24 seconds