Wall clock time and date at job start Tue Mar 31 2020 06:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47185 * 2 1 4 4 H 1.09002 * 109.47038 * 305.00476 * 3 2 1 5 5 O 1.42902 * 109.47145 * 65.00048 * 3 2 1 6 6 C 1.53002 * 109.47344 * 185.00322 * 3 2 1 7 7 C 1.52993 * 109.47345 * 175.00017 * 6 3 2 8 8 N 1.46500 * 109.47254 * 179.97438 * 7 6 3 9 9 C 1.34780 * 119.99828 * 180.02562 * 8 7 6 10 10 O 1.21579 * 120.00013 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99660 * 180.02562 * 9 8 7 12 12 C 1.39954 * 119.99746 * 174.84856 * 11 9 8 13 13 C 1.39283 * 119.94485 * 145.76752 * 12 11 9 14 14 C 1.38494 * 120.42916 * 180.02562 * 13 12 11 15 15 C 1.37681 * 120.32165 * 359.97438 * 14 13 12 16 16 C 1.40749 * 119.88060 * 359.97438 * 15 14 13 17 17 C 1.41411 * 120.20834 * 179.97438 * 16 15 14 18 18 H 1.07995 * 119.99793 * 205.18267 * 17 16 15 19 19 C 1.39931 * 119.99796 * 25.18576 * 17 16 15 20 20 N 1.30825 * 120.00393 * 16.78152 * 19 17 16 21 21 Si 1.86806 * 119.99990 * 196.78392 * 19 17 16 22 22 H 1.48501 * 109.47263 * 89.99387 * 21 19 17 23 23 H 1.48495 * 109.47165 * 210.00014 * 21 19 17 24 24 H 1.48507 * 109.46714 * 329.99945 * 21 19 17 25 25 C 1.38231 * 119.94650 * 325.49440 * 12 11 9 26 26 H 1.09005 * 109.47104 * 299.99675 * 1 2 3 27 27 H 1.09003 * 109.47434 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47927 * 59.99915 * 1 2 3 29 29 H 1.08995 * 109.47284 * 120.00351 * 2 1 3 30 30 H 1.09005 * 109.47104 * 240.00325 * 2 1 3 31 31 H 0.96701 * 113.99267 * 60.00366 * 5 3 2 32 32 H 1.09004 * 109.46988 * 295.00240 * 6 3 2 33 33 H 1.09005 * 109.46794 * 54.99928 * 6 3 2 34 34 H 1.09004 * 109.47260 * 300.00056 * 7 6 3 35 35 H 1.09006 * 109.47348 * 59.99644 * 7 6 3 36 36 H 0.96994 * 119.99792 * 0.02562 * 8 7 6 37 37 H 0.96998 * 119.99954 * 354.84904 * 11 9 8 38 38 H 1.07998 * 119.78834 * 359.97438 * 13 12 11 39 39 H 1.07997 * 119.84302 * 180.02562 * 14 13 12 40 40 H 1.07996 * 120.06263 * 179.97438 * 15 14 13 41 41 H 0.97007 * 120.00264 * 180.02562 * 20 19 17 42 42 H 1.08002 * 120.16105 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 8 1.6619 2.0814 1.2211 6 6 3.5648 1.4444 -0.1258 7 6 4.0644 2.8850 -0.2512 8 7 5.5245 2.8868 -0.3710 9 6 6.1892 4.0529 -0.4933 10 8 5.5770 5.1033 -0.5047 11 7 7.5324 4.0545 -0.6041 12 6 8.2137 5.2542 -0.8391 13 6 9.4751 5.4576 -0.2845 14 6 10.1579 6.6412 -0.5101 15 6 9.5969 7.6303 -1.2863 16 6 8.3234 7.4384 -1.8542 17 6 7.7404 8.4499 -2.6521 18 1 6.6665 8.5086 -2.7499 19 6 8.5550 9.3747 -3.3149 20 7 9.8296 9.1271 -3.4749 21 14 7.8224 10.9628 -3.9713 22 1 7.9038 12.0146 -2.9262 23 1 8.5800 11.3982 -5.1719 24 1 6.4009 10.7379 -4.3376 25 6 7.6361 6.2331 -1.6259 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3635 0.5138 -0.8899 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 2.0142 1.6542 2.0138 32 1 4.0030 0.9836 0.7595 33 1 3.8569 0.8801 -1.0115 34 1 3.6263 3.3458 -1.1365 35 1 3.7722 3.4494 0.6344 36 1 6.0129 2.0488 -0.3624 37 1 8.0269 3.2242 -0.5210 38 1 9.9232 4.6878 0.3261 39 1 11.1357 6.7887 -0.0758 40 1 10.1329 8.5518 -1.4592 41 1 10.3944 9.7684 -3.9340 42 1 6.6601 6.0743 -2.0603 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455906196.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:15 Heat of formation + Delta-G solvation = -102.011511 kcal Electronic energy + Delta-G solvation = -22377.680714 eV Core-core repulsion = 18934.675292 eV Total energy + Delta-G solvation = -3443.005423 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 4.88 seconds Orbital eigenvalues (eV) -41.43804 -39.41513 -38.91703 -36.36458 -35.91644 -34.82444 -33.73586 -31.83320 -31.73786 -29.64036 -27.26908 -26.60408 -23.66192 -22.83717 -22.62660 -22.32161 -21.58118 -19.60567 -19.25917 -17.57717 -17.38314 -17.05463 -16.92668 -16.49808 -16.37885 -16.12572 -15.49878 -15.29354 -14.94920 -14.74799 -14.62212 -14.08552 -13.87034 -13.51599 -13.48432 -13.04364 -12.93186 -12.87602 -12.77325 -12.51208 -12.22952 -12.17602 -12.00165 -11.80377 -11.65209 -11.55142 -11.27091 -11.01951 -10.84907 -10.73324 -10.12007 -9.38491 -8.72085 -8.57924 -6.36441 0.93361 1.03572 1.35858 1.49160 1.49937 1.69739 2.18635 2.21622 2.74886 3.25973 3.53073 3.75033 3.77281 3.96513 4.11010 4.28326 4.30740 4.48397 4.56780 4.65219 4.66075 4.76396 4.94586 5.02449 5.04931 5.07395 5.12336 5.13363 5.13561 5.22682 5.33516 5.36390 5.42983 5.46202 5.74072 5.84077 6.06878 6.12225 6.20923 6.37738 6.69637 6.91554 6.94975 7.01983 7.12868 7.60953 8.33909 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021752 B = 0.002803 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.920808 B = 9986.726951 C =10999.118121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.147 4.147 3 C 0.108 3.892 4 H 0.086 0.914 5 O -0.580 6.580 6 C -0.146 4.146 7 C 0.141 3.859 8 N -0.725 5.725 9 C 0.691 3.309 10 O -0.622 6.622 11 N -0.669 5.669 12 C 0.176 3.824 13 C -0.251 4.251 14 C -0.090 4.090 15 C -0.199 4.199 16 C 0.088 3.912 17 C -0.503 4.503 18 H 0.060 0.940 19 C 0.038 3.962 20 N -0.821 5.821 21 Si 0.982 3.018 22 H -0.260 1.260 23 H -0.260 1.260 24 H -0.266 1.266 25 C -0.238 4.238 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.387 0.613 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.042 0.958 35 H 0.051 0.949 36 H 0.415 0.585 37 H 0.419 0.581 38 H 0.134 0.866 39 H 0.125 0.875 40 H 0.105 0.895 41 H 0.290 0.710 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.095 -19.843 6.390 22.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.185 4.185 3 C 0.048 3.952 4 H 0.104 0.896 5 O -0.388 6.388 6 C -0.184 4.184 7 C 0.017 3.983 8 N -0.382 5.382 9 C 0.391 3.609 10 O -0.501 6.501 11 N -0.318 5.318 12 C 0.082 3.918 13 C -0.272 4.272 14 C -0.109 4.109 15 C -0.219 4.219 16 C 0.085 3.915 17 C -0.533 4.533 18 H 0.078 0.922 19 C -0.177 4.177 20 N -0.447 5.447 21 Si 0.802 3.198 22 H -0.184 1.184 23 H -0.184 1.184 24 H -0.191 1.191 25 C -0.260 4.260 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.237 0.763 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.252 0.748 37 H 0.256 0.744 38 H 0.151 0.849 39 H 0.143 0.857 40 H 0.123 0.877 41 H 0.100 0.900 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.798 -18.490 5.851 21.728 hybrid contribution 0.366 -0.106 -0.153 0.411 sum -9.432 -18.596 5.698 21.616 Atomic orbital electron populations 1.21724 0.95701 1.01807 1.01750 1.22167 0.96594 0.95707 1.04003 1.21917 0.92130 0.93788 0.87362 0.89599 1.86611 1.77329 1.58211 1.16616 1.22446 0.96792 0.93893 1.05280 1.21158 0.77516 0.98870 1.00767 1.44899 1.07960 1.06423 1.78954 1.16274 0.81954 0.84755 0.77919 1.90962 1.68147 1.32625 1.58414 1.42318 1.04881 1.09682 1.74900 1.17292 0.92574 0.86142 0.95779 1.20448 0.96351 1.00534 1.09869 1.20840 0.98966 0.93411 0.97635 1.21306 0.97929 1.00231 1.02480 1.17847 0.92425 0.91084 0.90111 1.19720 0.94201 1.12112 1.27247 0.92208 1.26688 0.94898 1.01930 0.94186 1.69854 1.07007 1.35560 1.32310 0.85224 0.79126 0.76889 0.78530 1.18430 1.18401 1.19055 1.20943 1.01560 0.95999 1.07546 0.93008 0.91877 0.93367 0.90139 0.89890 0.76337 0.88618 0.88493 0.93957 0.93054 0.74824 0.74355 0.84854 0.85689 0.87711 0.89977 0.90167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.81 71.98 0.71 -0.99 16 2 C -0.15 -1.31 5.61 30.59 0.17 -1.14 16 3 C 0.11 1.43 2.97 30.60 0.09 1.52 16 4 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 5 O -0.58 -9.61 12.41 -148.98 -1.85 -11.46 16 6 C -0.15 -1.74 5.01 30.59 0.15 -1.59 16 7 C 0.14 3.25 5.57 86.38 0.48 3.73 16 8 N -0.72 -17.66 5.56 -478.53 -2.66 -20.32 16 9 C 0.69 25.91 8.29 179.05 1.48 27.39 16 10 O -0.62 -31.16 14.10 -3.97 -0.06 -31.21 16 11 N -0.67 -23.72 5.34 -317.33 -1.70 -25.42 16 12 C 0.18 8.18 6.25 38.09 0.24 8.42 16 13 C -0.25 -10.70 9.97 22.58 0.23 -10.47 16 14 C -0.09 -4.17 10.02 22.20 0.22 -3.95 16 15 C -0.20 -11.00 8.69 22.75 0.20 -10.80 16 16 C 0.09 5.24 5.57 -21.30 -0.12 5.13 16 17 C -0.50 -30.16 9.05 23.46 0.21 -29.95 16 18 H 0.06 3.63 7.90 -2.91 -0.02 3.61 16 19 C 0.04 2.04 5.16 85.25 0.44 2.48 16 20 N -0.82 -44.66 10.94 21.82 0.24 -44.43 16 21 Si 0.98 41.16 29.59 68.60 2.03 43.19 16 22 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 23 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 24 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 25 C -0.24 -13.43 8.39 22.85 0.19 -13.23 16 26 H 0.05 0.67 7.82 -2.38 -0.02 0.65 16 27 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.39 3.47 9.04 -74.06 -0.67 2.80 16 32 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.05 1.42 7.82 -2.38 -0.02 1.40 16 36 H 0.41 6.28 8.49 -92.71 -0.79 5.50 16 37 H 0.42 10.38 8.84 -92.71 -0.82 9.56 16 38 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 39 H 0.13 4.88 8.06 -2.91 -0.02 4.86 16 40 H 0.10 5.96 6.16 -2.91 -0.02 5.94 16 41 H 0.29 14.06 8.30 -92.70 -0.77 13.29 16 42 H 0.08 4.83 6.48 -2.91 -0.02 4.81 16 Total: -1.00 -78.98 351.72 -0.52 -79.50 By element: Atomic # 1 Polarization: 34.81 SS G_CDS: -1.22 Total: 33.58 kcal Atomic # 6 Polarization: -28.13 SS G_CDS: 4.70 Total: -23.43 kcal Atomic # 7 Polarization: -86.05 SS G_CDS: -4.12 Total: -90.16 kcal Atomic # 8 Polarization: -40.77 SS G_CDS: -1.90 Total: -42.67 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -78.98 -0.52 -79.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455906196.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.512 kcal (2) G-P(sol) polarization free energy of solvation -78.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.89 seconds