Wall clock time and date at job start Tue Mar 31 2020 06:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47455 * 2 1 4 4 H 1.08995 * 109.46927 * 305.01064 * 3 2 1 5 5 C 1.52997 * 109.47507 * 185.00130 * 3 2 1 6 6 C 1.52993 * 109.47186 * 175.00115 * 5 3 2 7 7 O 1.42902 * 109.47219 * 180.02562 * 6 5 3 8 8 N 1.46501 * 109.46463 * 65.00248 * 3 2 1 9 9 C 1.34781 * 120.00273 * 274.99831 * 8 3 2 10 10 O 1.21588 * 119.99793 * 0.02562 * 9 8 3 11 11 N 1.34771 * 120.00284 * 180.02562 * 9 8 3 12 12 C 1.39956 * 120.00119 * 184.52808 * 11 9 8 13 13 C 1.39288 * 119.94693 * 144.36954 * 12 11 9 14 14 C 1.38492 * 120.42769 * 179.97438 * 13 12 11 15 15 C 1.37681 * 120.31894 * 359.97201 * 14 13 12 16 16 C 1.40738 * 119.88700 * 0.02562 * 15 14 13 17 17 C 1.41407 * 120.21310 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00337 * 155.37302 * 17 16 15 19 19 C 1.39932 * 119.99942 * 335.37871 * 17 16 15 20 20 N 1.30831 * 120.00001 * 344.58622 * 19 17 16 21 21 Si 1.86797 * 120.00224 * 164.59373 * 19 17 16 22 22 H 1.48504 * 109.47403 * 89.99655 * 21 19 17 23 23 H 1.48495 * 109.47095 * 209.99759 * 21 19 17 24 24 H 1.48501 * 109.46758 * 329.99690 * 21 19 17 25 25 C 1.38237 * 119.94288 * 324.08641 * 12 11 9 26 26 H 1.09003 * 109.46705 * 299.99227 * 1 2 3 27 27 H 1.08997 * 109.47650 * 59.99742 * 1 2 3 28 28 H 1.09007 * 109.47116 * 180.02562 * 1 2 3 29 29 H 1.09011 * 109.46907 * 240.00156 * 2 1 3 30 30 H 1.09002 * 109.47390 * 120.00655 * 2 1 3 31 31 H 1.09001 * 109.47225 * 295.01022 * 5 3 2 32 32 H 1.09007 * 109.46597 * 55.00097 * 5 3 2 33 33 H 1.08993 * 109.47376 * 300.00079 * 6 5 3 34 34 H 1.08997 * 109.46941 * 60.00162 * 6 5 3 35 35 H 0.96701 * 114.00389 * 180.02562 * 7 6 5 36 36 H 0.97004 * 120.00043 * 95.00863 * 8 3 2 37 37 H 0.97003 * 119.99605 * 4.79255 * 11 9 8 38 38 H 1.08000 * 119.78488 * 0.02562 * 13 12 11 39 39 H 1.07997 * 119.83977 * 179.97438 * 14 13 12 40 40 H 1.08007 * 120.05650 * 179.97438 * 15 14 13 41 41 H 0.97002 * 120.00062 * 180.02562 * 20 19 17 42 42 H 1.07996 * 120.15784 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6053 1.9815 -0.8417 5 6 3.5649 1.4443 -0.1257 6 6 4.0645 2.8849 -0.2511 7 8 5.4886 2.8866 -0.3692 8 7 1.6525 2.0973 1.2519 9 6 0.4352 2.6643 1.3672 10 8 -0.3415 2.6318 0.4323 11 7 0.0789 3.2671 2.5186 12 6 -1.2173 3.7722 2.6721 13 6 -1.8467 3.7066 3.9130 14 6 -3.1290 4.2038 4.0762 15 6 -3.7957 4.7695 3.0127 16 6 -3.1723 4.8428 1.7530 17 6 -3.8510 5.4218 0.6558 18 1 -3.2897 5.8401 -0.1666 19 6 -5.2498 5.4529 0.6357 20 7 -5.9328 4.6976 1.4572 21 14 -6.1420 6.5725 -0.5642 22 1 -6.3876 5.8422 -1.8337 23 1 -7.4391 6.9941 0.0231 24 1 -5.3087 7.7712 -0.8358 25 6 -1.8685 4.3408 1.5934 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 4.0030 0.9834 0.7595 32 1 3.8570 0.8800 -1.0114 33 1 3.6264 3.3457 -1.1364 34 1 3.7723 3.4491 0.6345 35 1 5.8754 3.7690 -0.4522 36 1 2.2721 2.1230 1.9979 37 1 0.7220 3.3544 3.2396 38 1 -1.3312 3.2658 4.7534 39 1 -3.6081 4.1476 5.0424 40 1 -4.7957 5.1556 3.1446 41 1 -6.9024 4.7189 1.4430 42 1 -1.3794 4.3966 0.6322 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455909354.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:49 Heat of formation + Delta-G solvation = -69.124015 kcal Electronic energy + Delta-G solvation = -23343.764797 eV Core-core repulsion = 19902.185484 eV Total energy + Delta-G solvation = -3441.579314 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -40.16156 -37.98703 -37.09701 -35.86184 -34.29456 -33.10521 -31.87736 -31.03852 -29.75545 -27.83933 -25.66535 -25.22802 -22.15520 -21.94205 -20.86357 -20.57966 -20.06579 -18.07922 -17.75445 -17.26925 -16.25409 -15.53797 -15.39407 -15.04907 -14.68762 -14.49115 -14.26305 -13.91517 -13.42630 -13.32450 -12.90613 -12.84883 -12.58445 -12.17625 -11.90250 -11.62679 -11.45459 -11.24621 -11.20670 -11.04152 -10.99331 -10.71749 -10.60831 -10.44324 -10.21847 -10.09027 -9.67813 -9.47201 -9.16351 -8.83835 -8.73061 -7.37995 -6.82656 -6.65112 -4.28042 2.79175 2.92941 3.09210 3.12184 3.16576 3.25879 3.76191 3.85769 4.00370 4.58296 4.70963 4.77642 4.79377 4.95496 5.21875 5.22924 5.34792 5.52678 5.65038 5.74657 5.78646 5.88652 6.01933 6.15227 6.29001 6.33809 6.45810 6.67444 6.72806 6.86842 6.88950 7.10278 7.17582 7.31502 7.33871 7.41258 7.74980 7.90014 8.06641 8.16535 8.31948 8.50615 8.72968 8.96613 9.03590 9.12841 10.27933 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018258 B = 0.003686 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.206050 B = 7595.031222 C = 7969.585876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.131 4.131 3 C 0.166 3.834 4 H 0.091 0.909 5 C -0.125 4.125 6 C 0.074 3.926 7 O -0.578 6.578 8 N -0.748 5.748 9 C 0.696 3.304 10 O -0.557 6.557 11 N -0.683 5.683 12 C 0.166 3.834 13 C -0.264 4.264 14 C -0.093 4.093 15 C -0.175 4.175 16 C 0.117 3.883 17 C -0.456 4.456 18 H 0.076 0.924 19 C 0.075 3.925 20 N -0.796 5.796 21 Si 0.908 3.092 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.261 1.261 25 C -0.208 4.208 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.041 0.959 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.380 0.620 36 H 0.390 0.610 37 H 0.392 0.608 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.121 0.879 41 H 0.279 0.721 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.627 -4.256 -0.367 16.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.169 4.169 3 C 0.061 3.939 4 H 0.109 0.891 5 C -0.163 4.163 6 C -0.003 4.003 7 O -0.384 6.384 8 N -0.405 5.405 9 C 0.397 3.603 10 O -0.432 6.432 11 N -0.330 5.330 12 C 0.074 3.926 13 C -0.285 4.285 14 C -0.112 4.112 15 C -0.195 4.195 16 C 0.114 3.886 17 C -0.486 4.486 18 H 0.094 0.906 19 C -0.142 4.142 20 N -0.422 5.422 21 Si 0.733 3.267 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.185 1.185 25 C -0.230 4.230 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.227 0.773 36 H 0.224 0.776 37 H 0.225 0.775 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.139 0.861 41 H 0.090 0.910 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 14.567 -5.031 -1.173 15.456 hybrid contribution 0.173 0.955 0.272 1.008 sum 14.740 -4.075 -0.901 15.319 Atomic orbital electron populations 1.21792 0.94158 1.00289 1.03984 1.21944 0.97673 0.95627 1.01697 1.20775 0.92381 0.93560 0.87204 0.89054 1.21809 0.94280 0.96371 1.03886 1.22198 0.80515 0.97376 1.00234 1.86435 1.20826 1.34165 1.96972 1.45273 1.16305 1.62021 1.16918 1.15964 0.82001 0.78571 0.83765 1.90999 1.50725 1.63420 1.38021 1.42589 1.13580 1.60617 1.16184 1.17223 0.82655 0.97555 0.95149 1.20023 0.97459 1.15589 0.95475 1.20445 0.93798 0.99484 0.97485 1.21397 1.01070 1.05100 0.91918 1.17516 0.90351 0.88188 0.92508 1.19550 0.90920 1.33666 1.04416 0.90576 1.25890 0.98107 0.94247 0.95969 1.69829 1.08415 1.30675 1.33263 0.86320 0.78776 0.81092 0.80559 1.19536 1.20172 1.18529 1.21086 0.98164 1.06265 0.97469 0.91834 0.91973 0.94013 0.91473 0.92165 0.90770 0.89699 0.93368 0.93336 0.77338 0.77640 0.77457 0.89526 0.89187 0.86141 0.91036 0.87004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.51 37.16 0.32 -1.86 16 2 C -0.13 -1.49 5.61 -26.73 -0.15 -1.64 16 3 C 0.17 1.89 2.26 -67.93 -0.15 1.74 16 4 H 0.09 1.24 7.58 -51.93 -0.39 0.84 16 5 C -0.13 -1.13 5.12 -26.74 -0.14 -1.26 16 6 C 0.07 0.68 6.93 37.15 0.26 0.94 16 7 O -0.58 -5.28 13.66 -35.23 -0.48 -5.76 16 8 N -0.75 -9.19 4.49 -58.68 -0.26 -9.45 16 9 C 0.70 12.20 6.97 -86.92 -0.61 11.59 16 10 O -0.56 -12.24 10.96 5.29 0.06 -12.18 16 11 N -0.68 -12.05 5.34 -14.27 -0.08 -12.12 16 12 C 0.17 3.77 6.28 -83.76 -0.53 3.25 16 13 C -0.26 -5.85 9.97 -39.10 -0.39 -6.24 16 14 C -0.09 -2.20 10.02 -39.69 -0.40 -2.60 16 15 C -0.18 -4.65 8.69 -38.84 -0.34 -4.98 16 16 C 0.12 3.26 5.58 -106.85 -0.60 2.66 16 17 C -0.46 -12.64 9.06 -37.74 -0.34 -12.98 16 18 H 0.08 2.06 7.89 -52.49 -0.41 1.64 16 19 C 0.07 1.94 5.19 -17.34 -0.09 1.85 16 20 N -0.80 -21.21 10.82 55.55 0.60 -20.60 16 21 Si 0.91 19.30 29.59 -169.99 -5.03 14.27 16 22 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 23 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 24 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 25 C -0.21 -5.42 8.43 -38.68 -0.33 -5.75 16 26 H 0.06 1.15 5.64 -51.93 -0.29 0.86 16 27 H 0.06 1.03 7.84 -51.93 -0.41 0.63 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.73 8.14 -51.92 -0.42 0.30 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.05 0.43 7.75 -51.93 -0.40 0.03 16 35 H 0.38 1.88 9.12 45.56 0.42 2.30 16 36 H 0.39 3.65 8.62 -40.82 -0.35 3.30 16 37 H 0.39 5.32 8.84 -40.82 -0.36 4.96 16 38 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 39 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 40 H 0.12 3.29 6.07 -52.48 -0.32 2.97 16 41 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 42 H 0.11 3.02 6.27 -52.49 -0.33 2.69 16 LS Contribution 343.68 15.07 5.18 5.18 Total: -1.00 -32.33 343.68 -8.86 -41.19 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -5.37 Total: 14.76 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -3.48 Total: -15.28 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 0.26 Total: -42.18 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.42 Total: -17.94 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.27 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.33 -8.86 -41.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455909354.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.937 kcal (2) G-P(sol) polarization free energy of solvation -32.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds