Wall clock time and date at job start Tue Mar 31 2020 06:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47455 * 2 1 4 4 H 1.08995 * 109.46927 * 305.01064 * 3 2 1 5 5 C 1.52997 * 109.47507 * 185.00130 * 3 2 1 6 6 C 1.52993 * 109.47186 * 175.00115 * 5 3 2 7 7 O 1.42902 * 109.47219 * 180.02562 * 6 5 3 8 8 N 1.46501 * 109.46463 * 65.00248 * 3 2 1 9 9 C 1.34781 * 120.00273 * 274.99831 * 8 3 2 10 10 O 1.21588 * 119.99793 * 0.02562 * 9 8 3 11 11 N 1.34771 * 120.00284 * 180.02562 * 9 8 3 12 12 C 1.39956 * 120.00119 * 184.52808 * 11 9 8 13 13 C 1.39288 * 119.94693 * 144.36954 * 12 11 9 14 14 C 1.38492 * 120.42769 * 179.97438 * 13 12 11 15 15 C 1.37681 * 120.31894 * 359.97201 * 14 13 12 16 16 C 1.40738 * 119.88700 * 0.02562 * 15 14 13 17 17 C 1.41407 * 120.21310 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00337 * 155.37302 * 17 16 15 19 19 C 1.39932 * 119.99942 * 335.37871 * 17 16 15 20 20 N 1.30831 * 120.00001 * 344.58622 * 19 17 16 21 21 Si 1.86797 * 120.00224 * 164.59373 * 19 17 16 22 22 H 1.48504 * 109.47403 * 89.99655 * 21 19 17 23 23 H 1.48495 * 109.47095 * 209.99759 * 21 19 17 24 24 H 1.48501 * 109.46758 * 329.99690 * 21 19 17 25 25 C 1.38237 * 119.94288 * 324.08641 * 12 11 9 26 26 H 1.09003 * 109.46705 * 299.99227 * 1 2 3 27 27 H 1.08997 * 109.47650 * 59.99742 * 1 2 3 28 28 H 1.09007 * 109.47116 * 180.02562 * 1 2 3 29 29 H 1.09011 * 109.46907 * 240.00156 * 2 1 3 30 30 H 1.09002 * 109.47390 * 120.00655 * 2 1 3 31 31 H 1.09001 * 109.47225 * 295.01022 * 5 3 2 32 32 H 1.09007 * 109.46597 * 55.00097 * 5 3 2 33 33 H 1.08993 * 109.47376 * 300.00079 * 6 5 3 34 34 H 1.08997 * 109.46941 * 60.00162 * 6 5 3 35 35 H 0.96701 * 114.00389 * 180.02562 * 7 6 5 36 36 H 0.97004 * 120.00043 * 95.00863 * 8 3 2 37 37 H 0.97003 * 119.99605 * 4.79255 * 11 9 8 38 38 H 1.08000 * 119.78488 * 0.02562 * 13 12 11 39 39 H 1.07997 * 119.83977 * 179.97438 * 14 13 12 40 40 H 1.08007 * 120.05650 * 179.97438 * 15 14 13 41 41 H 0.97002 * 120.00062 * 180.02562 * 20 19 17 42 42 H 1.07996 * 120.15784 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6053 1.9815 -0.8417 5 6 3.5649 1.4443 -0.1257 6 6 4.0645 2.8849 -0.2511 7 8 5.4886 2.8866 -0.3692 8 7 1.6525 2.0973 1.2519 9 6 0.4352 2.6643 1.3672 10 8 -0.3415 2.6318 0.4323 11 7 0.0789 3.2671 2.5186 12 6 -1.2173 3.7722 2.6721 13 6 -1.8467 3.7066 3.9130 14 6 -3.1290 4.2038 4.0762 15 6 -3.7957 4.7695 3.0127 16 6 -3.1723 4.8428 1.7530 17 6 -3.8510 5.4218 0.6558 18 1 -3.2897 5.8401 -0.1666 19 6 -5.2498 5.4529 0.6357 20 7 -5.9328 4.6976 1.4572 21 14 -6.1420 6.5725 -0.5642 22 1 -6.3876 5.8422 -1.8337 23 1 -7.4391 6.9941 0.0231 24 1 -5.3087 7.7712 -0.8358 25 6 -1.8685 4.3408 1.5934 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 4.0030 0.9834 0.7595 32 1 3.8570 0.8800 -1.0114 33 1 3.6264 3.3457 -1.1364 34 1 3.7723 3.4491 0.6345 35 1 5.8754 3.7690 -0.4522 36 1 2.2721 2.1230 1.9979 37 1 0.7220 3.3544 3.2396 38 1 -1.3312 3.2658 4.7534 39 1 -3.6081 4.1476 5.0424 40 1 -4.7957 5.1556 3.1446 41 1 -6.9024 4.7189 1.4430 42 1 -1.3794 4.3966 0.6322 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455909354.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:47 Heat of formation + Delta-G solvation = -93.059695 kcal Electronic energy + Delta-G solvation = -23344.802726 eV Core-core repulsion = 19902.185484 eV Total energy + Delta-G solvation = -3442.617243 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -41.56160 -39.44636 -38.26038 -36.96192 -36.01529 -34.86666 -33.14581 -31.95991 -31.70964 -29.57091 -27.23150 -26.65724 -23.68796 -22.79701 -22.71342 -21.80517 -21.58168 -19.59446 -19.22801 -18.28038 -17.48164 -17.27034 -16.67066 -16.50556 -16.35874 -15.76158 -15.42541 -15.21564 -14.77853 -14.73323 -14.41251 -14.28832 -13.95512 -13.59305 -13.45233 -13.09872 -12.81557 -12.75566 -12.57529 -12.47475 -12.20125 -12.07621 -11.95247 -11.93725 -11.73888 -11.53203 -11.22205 -10.96470 -10.89500 -10.56942 -9.99107 -9.34985 -8.66118 -8.57417 -6.34390 0.96603 1.08182 1.36166 1.48001 1.53090 1.74394 2.21409 2.28574 2.77050 3.15607 3.36268 3.78595 3.95582 4.01431 4.14535 4.27823 4.37126 4.50778 4.52652 4.62011 4.67871 4.75577 4.95737 4.97500 5.06337 5.09457 5.11203 5.14821 5.17292 5.20914 5.27557 5.37100 5.50528 5.63439 5.77655 5.87938 6.09865 6.16746 6.24436 6.40931 6.72913 6.84815 6.97714 7.05040 7.18535 7.71339 8.36181 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018258 B = 0.003686 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.206050 B = 7595.031222 C = 7969.585876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.124 4.124 3 C 0.167 3.833 4 H 0.065 0.935 5 C -0.114 4.114 6 C 0.074 3.926 7 O -0.590 6.590 8 N -0.723 5.723 9 C 0.694 3.306 10 O -0.605 6.605 11 N -0.673 5.673 12 C 0.176 3.824 13 C -0.252 4.252 14 C -0.093 4.093 15 C -0.202 4.202 16 C 0.087 3.913 17 C -0.501 4.501 18 H 0.064 0.936 19 C 0.034 3.966 20 N -0.827 5.827 21 Si 0.983 3.017 22 H -0.266 1.266 23 H -0.260 1.260 24 H -0.260 1.260 25 C -0.233 4.233 26 H 0.030 0.970 27 H 0.034 0.966 28 H 0.053 0.947 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.040 0.960 34 H 0.050 0.950 35 H 0.397 0.603 36 H 0.410 0.590 37 H 0.416 0.584 38 H 0.129 0.871 39 H 0.121 0.879 40 H 0.105 0.895 41 H 0.288 0.712 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.632 -5.166 0.757 18.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.162 4.162 3 C 0.062 3.938 4 H 0.083 0.917 5 C -0.152 4.152 6 C -0.003 4.003 7 O -0.398 6.398 8 N -0.380 5.380 9 C 0.395 3.605 10 O -0.483 6.483 11 N -0.322 5.322 12 C 0.082 3.918 13 C -0.273 4.273 14 C -0.111 4.111 15 C -0.222 4.222 16 C 0.084 3.916 17 C -0.531 4.531 18 H 0.082 0.918 19 C -0.180 4.180 20 N -0.453 5.453 21 Si 0.803 3.197 22 H -0.191 1.191 23 H -0.184 1.184 24 H -0.183 1.183 25 C -0.255 4.255 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.247 0.753 36 H 0.247 0.753 37 H 0.253 0.747 38 H 0.147 0.853 39 H 0.139 0.861 40 H 0.123 0.877 41 H 0.098 0.902 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 16.669 -5.955 -0.005 17.701 hybrid contribution -0.294 1.142 -0.017 1.179 sum 16.375 -4.813 -0.022 17.068 Atomic orbital electron populations 1.21714 0.97164 1.00016 1.00969 1.21918 0.94665 0.95810 1.03812 1.20839 0.94183 0.93162 0.85629 0.91726 1.21696 0.91732 0.96621 1.05114 1.22151 0.80780 0.97425 0.99988 1.86384 1.20523 1.35969 1.96950 1.45044 1.14546 1.60400 1.18039 1.16154 0.82969 0.78518 0.82902 1.90990 1.52642 1.65003 1.39658 1.42339 1.12375 1.60219 1.17225 1.17255 0.84334 0.95765 0.94410 1.20442 0.96853 1.13781 0.96265 1.20814 0.94377 0.98050 0.97893 1.21359 1.00993 1.07208 0.92613 1.17853 0.91400 0.89043 0.93284 1.19761 0.92390 1.36003 1.04914 0.91758 1.26730 0.98133 0.95224 0.97870 1.69875 1.09106 1.31615 1.34715 0.85213 0.77769 0.78715 0.78015 1.19058 1.18373 1.18342 1.21036 0.98377 1.08223 0.97906 0.95124 0.94722 0.92826 0.89098 0.90193 0.89140 0.88701 0.94200 0.93174 0.75347 0.75302 0.74674 0.85267 0.86122 0.87672 0.90179 0.89183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.27 8.51 71.98 0.61 -3.65 16 2 C -0.12 -2.55 5.61 30.59 0.17 -2.38 16 3 C 0.17 3.54 2.26 44.99 0.10 3.65 16 4 H 0.06 1.77 7.58 -2.39 -0.02 1.75 16 5 C -0.11 -1.71 5.12 30.59 0.16 -1.56 16 6 C 0.07 1.20 6.93 71.98 0.50 1.70 16 7 O -0.59 -9.28 13.66 -148.98 -2.03 -11.32 16 8 N -0.72 -16.53 4.49 -457.82 -2.05 -18.58 16 9 C 0.69 24.16 6.97 179.05 1.25 25.41 16 10 O -0.60 -27.74 10.96 -3.99 -0.04 -27.79 16 11 N -0.67 -22.86 5.34 -317.33 -1.69 -24.55 16 12 C 0.18 7.95 6.28 38.10 0.24 8.19 16 13 C -0.25 -10.65 9.97 22.58 0.23 -10.42 16 14 C -0.09 -4.29 10.02 22.20 0.22 -4.07 16 15 C -0.20 -11.04 8.69 22.75 0.20 -10.84 16 16 C 0.09 5.08 5.58 -21.31 -0.12 4.96 16 17 C -0.50 -29.50 9.06 23.46 0.21 -29.29 16 18 H 0.06 3.75 7.89 -2.91 -0.02 3.73 16 19 C 0.03 1.86 5.19 85.25 0.44 2.30 16 20 N -0.83 -45.57 10.82 21.82 0.24 -45.33 16 21 Si 0.98 40.76 29.59 68.60 2.03 42.79 16 22 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 23 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 24 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 25 C -0.23 -12.72 8.43 22.85 0.19 -12.52 16 26 H 0.03 1.11 5.64 -2.39 -0.01 1.10 16 27 H 0.03 1.20 7.84 -2.39 -0.02 1.18 16 28 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 29 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.05 0.78 7.75 -2.39 -0.02 0.76 16 35 H 0.40 3.05 9.12 -74.06 -0.68 2.38 16 36 H 0.41 6.34 8.62 -92.71 -0.80 5.54 16 37 H 0.42 10.04 8.84 -92.71 -0.82 9.22 16 38 H 0.13 4.37 8.06 -2.91 -0.02 4.35 16 39 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 40 H 0.11 5.98 6.07 -2.91 -0.02 5.97 16 41 H 0.29 14.23 8.30 -92.71 -0.77 13.46 16 42 H 0.09 5.21 6.27 -2.91 -0.02 5.19 16 Total: -1.00 -75.33 343.68 -0.39 -75.72 By element: Atomic # 1 Polarization: 38.82 SS G_CDS: -1.23 Total: 37.59 kcal Atomic # 6 Polarization: -32.93 SS G_CDS: 4.40 Total: -28.53 kcal Atomic # 7 Polarization: -84.95 SS G_CDS: -3.51 Total: -88.47 kcal Atomic # 8 Polarization: -37.02 SS G_CDS: -2.08 Total: -39.10 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Total: -75.33 -0.39 -75.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455909354.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.335 kcal (2) G-P(sol) polarization free energy of solvation -75.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds