Wall clock time and date at job start Tue Mar 31 2020 07:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46856 * 2 1 4 4 H 1.09003 * 109.47487 * 55.00149 * 3 2 1 5 5 C 1.53005 * 109.47062 * 174.99920 * 3 2 1 6 6 O 1.42902 * 109.46836 * 54.99811 * 5 3 2 7 7 C 1.42897 * 114.00014 * 179.97438 * 6 5 3 8 8 N 1.46500 * 109.47429 * 294.99922 * 3 2 1 9 9 C 1.34777 * 119.99968 * 84.99991 * 8 3 2 10 10 O 1.21591 * 120.00219 * 0.02562 * 9 8 3 11 11 N 1.34777 * 119.99866 * 180.02562 * 9 8 3 12 12 C 1.39959 * 119.99821 * 174.82911 * 11 9 8 13 13 C 1.39281 * 119.94674 * 146.38995 * 12 11 9 14 14 C 1.38493 * 120.42999 * 179.97438 * 13 12 11 15 15 C 1.37688 * 120.31724 * 0.02562 * 14 13 12 16 16 C 1.40739 * 119.88493 * 0.02562 * 15 14 13 17 17 C 1.41405 * 120.21129 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00522 * 151.76489 * 17 16 15 19 19 C 1.39939 * 120.00012 * 331.76226 * 17 16 15 20 20 N 1.30834 * 119.99543 * 348.99595 * 19 17 16 21 21 Si 1.86793 * 120.00248 * 168.99565 * 19 17 16 22 22 H 1.48503 * 109.47334 * 60.00250 * 21 19 17 23 23 H 1.48496 * 109.47122 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47371 * 299.99989 * 21 19 17 25 25 C 1.38234 * 119.94493 * 326.10111 * 12 11 9 26 26 H 1.08992 * 109.47304 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47076 * 300.00150 * 1 2 3 28 28 H 1.09007 * 109.47383 * 59.99846 * 1 2 3 29 29 H 1.08995 * 109.46875 * 240.00307 * 2 1 3 30 30 H 1.09001 * 109.46627 * 119.99771 * 2 1 3 31 31 H 1.08997 * 109.47065 * 295.00144 * 5 3 2 32 32 H 1.08996 * 109.47103 * 174.99860 * 5 3 2 33 33 H 1.08998 * 109.47492 * 180.02562 * 7 6 5 34 34 H 1.09010 * 109.46924 * 60.00158 * 7 6 5 35 35 H 1.08994 * 109.47334 * 300.00803 * 7 6 5 36 36 H 0.97002 * 119.99762 * 265.00118 * 8 3 2 37 37 H 0.96999 * 119.99728 * 354.82111 * 11 9 8 38 38 H 1.08005 * 119.78605 * 359.96965 * 13 12 11 39 39 H 1.07997 * 119.84020 * 180.02562 * 14 13 12 40 40 H 1.07996 * 120.05364 * 180.02562 * 15 14 13 41 41 H 0.97004 * 119.99705 * 179.97438 * 20 19 17 42 42 H 1.08002 * 120.16077 * 0.02562 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1257 6 8 4.1293 0.6404 -0.9121 7 6 5.5565 0.5752 -0.8856 8 7 1.6524 2.0975 -1.2518 9 6 0.4351 2.6644 -1.3669 10 8 -0.3413 2.6326 -0.4317 11 7 0.0784 3.2666 -2.5187 12 6 -1.2219 3.7596 -2.6771 13 6 -1.4427 4.9080 -3.4337 14 6 -2.7252 5.4043 -3.5974 15 6 -3.7968 4.7673 -3.0129 16 6 -3.5888 3.6065 -2.2447 17 6 -4.6845 2.9465 -1.6417 18 1 -4.6399 1.8832 -1.4581 19 6 -5.8265 3.6712 -1.2828 20 7 -5.8043 4.9792 -1.3027 21 14 -7.3827 2.7711 -0.7755 22 1 -7.1022 1.9305 0.4162 23 1 -8.4408 3.7593 -0.4454 24 1 -7.8421 1.9079 -1.8931 25 6 -2.2856 3.1026 -2.0873 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8499 1.0378 1.0960 32 1 3.9355 2.4655 0.0366 33 1 5.9069 -0.0530 -1.7046 34 1 5.8833 0.1508 0.0638 35 1 5.9682 1.5784 -0.9959 36 1 2.2720 2.1232 -1.9977 37 1 0.7229 3.3583 -3.2378 38 1 -0.6083 5.4148 -3.8957 39 1 -2.8856 6.2952 -4.1864 40 1 -4.7952 5.1578 -3.1437 41 1 -6.5961 5.4815 -1.0543 42 1 -2.1158 2.2097 -1.5040 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455911531.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:39 Heat of formation + Delta-G solvation = -57.895069 kcal Electronic energy + Delta-G solvation = -23410.166087 eV Core-core repulsion = 19969.073697 eV Total energy + Delta-G solvation = -3441.092390 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.10995 -38.43278 -37.26252 -35.42835 -34.19987 -33.03702 -31.78801 -29.71945 -29.40223 -27.69180 -26.41598 -25.19993 -23.50320 -22.04855 -20.84823 -20.41127 -19.97278 -17.98303 -17.52348 -16.83250 -16.17595 -15.71996 -15.25943 -15.23732 -15.03732 -14.63304 -14.35398 -13.80516 -13.44157 -13.05531 -12.86656 -12.78785 -12.66328 -12.26762 -12.03228 -11.70102 -11.58800 -11.26070 -11.16225 -11.04911 -10.90514 -10.60328 -10.56188 -10.41286 -10.05399 -9.97229 -9.65930 -9.41631 -9.10080 -8.80988 -8.74208 -7.32233 -6.76432 -6.57563 -4.25920 2.82629 2.95778 3.13984 3.15210 3.18526 3.28880 3.48672 3.84464 4.04622 4.59013 4.69082 4.77390 4.86760 5.00501 5.05486 5.16245 5.31984 5.36417 5.42631 5.66361 5.80810 5.86121 6.10360 6.24538 6.31062 6.44275 6.47537 6.71119 6.78773 6.83840 6.91971 6.95028 7.13274 7.19800 7.35266 7.46374 7.79036 7.93051 8.09055 8.19392 8.35893 8.56086 8.76322 9.00717 9.06731 9.17657 10.35316 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.022390 B = 0.003710 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.273743 B = 7545.692070 C = 8542.561070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 C 0.169 3.831 4 H 0.101 0.899 5 C 0.052 3.948 6 O -0.386 6.386 7 C 0.031 3.969 8 N -0.743 5.743 9 C 0.697 3.303 10 O -0.559 6.559 11 N -0.683 5.683 12 C 0.169 3.831 13 C -0.261 4.261 14 C -0.094 4.094 15 C -0.170 4.170 16 C 0.119 3.881 17 C -0.458 4.458 18 H 0.075 0.925 19 C 0.073 3.927 20 N -0.803 5.803 21 Si 0.910 3.090 22 H -0.266 1.266 23 H -0.279 1.279 24 H -0.265 1.265 25 C -0.206 4.206 26 H 0.041 0.959 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.395 0.605 37 H 0.393 0.607 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.121 0.879 41 H 0.278 0.722 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.508 -6.226 0.513 18.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C 0.063 3.937 4 H 0.118 0.882 5 C -0.025 4.025 6 O -0.305 6.305 7 C -0.065 4.065 8 N -0.400 5.400 9 C 0.397 3.603 10 O -0.434 6.434 11 N -0.330 5.330 12 C 0.076 3.924 13 C -0.283 4.283 14 C -0.113 4.113 15 C -0.190 4.190 16 C 0.116 3.884 17 C -0.488 4.488 18 H 0.093 0.907 19 C -0.143 4.143 20 N -0.429 5.429 21 Si 0.735 3.265 22 H -0.191 1.191 23 H -0.205 1.205 24 H -0.190 1.190 25 C -0.228 4.228 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.229 0.771 37 H 0.226 0.774 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.138 0.862 41 H 0.089 0.911 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 16.535 -6.173 1.345 17.701 hybrid contribution 0.270 -0.030 -0.193 0.333 sum 16.805 -6.203 1.152 17.950 Atomic orbital electron populations 1.21823 0.94393 1.00297 1.03835 1.21856 0.97179 0.95518 1.02037 1.20918 0.90925 0.94129 0.87726 0.88151 1.22922 0.93568 0.94803 0.91187 1.87913 1.19920 1.70690 1.51940 1.22739 0.81189 1.00871 1.01744 1.45116 1.16396 1.61467 1.17029 1.15962 0.82014 0.78782 0.83514 1.91003 1.50946 1.63296 1.38181 1.42616 1.13301 1.61217 1.15850 1.17221 0.81262 0.93912 0.99961 1.20027 0.96592 0.99354 1.12311 1.20457 0.92708 0.98327 0.99835 1.21391 0.98071 0.99325 1.00232 1.17495 0.91076 0.91285 0.88502 1.19501 0.98278 0.96017 1.35009 0.90681 1.25867 1.00001 0.94746 0.93651 1.69806 1.29862 1.06680 1.36552 0.86336 0.80413 0.79880 0.79844 1.19081 1.20452 1.18968 1.21008 0.91058 1.03467 1.07258 0.94015 0.92133 0.91821 0.91358 0.91901 0.91821 0.92590 0.89648 0.94121 0.94135 0.77137 0.77405 0.89459 0.89140 0.86169 0.91084 0.87341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 8.51 37.16 0.32 -1.99 16 2 C -0.13 -1.59 5.33 -26.73 -0.14 -1.73 16 3 C 0.17 2.06 2.66 -67.93 -0.18 1.88 16 4 H 0.10 1.38 7.58 -51.93 -0.39 0.98 16 5 C 0.05 0.47 5.68 37.16 0.21 0.69 16 6 O -0.39 -3.66 9.65 -35.23 -0.34 -4.00 16 7 C 0.03 0.20 11.01 101.05 1.11 1.31 16 8 N -0.74 -10.07 5.02 -58.67 -0.29 -10.36 16 9 C 0.70 12.82 6.86 -86.92 -0.60 12.23 16 10 O -0.56 -12.69 11.19 5.29 0.06 -12.63 16 11 N -0.68 -12.57 5.35 -14.27 -0.08 -12.64 16 12 C 0.17 3.91 6.26 -83.76 -0.52 3.39 16 13 C -0.26 -5.88 9.97 -39.10 -0.39 -6.27 16 14 C -0.09 -2.25 10.02 -39.69 -0.40 -2.65 16 15 C -0.17 -4.57 8.66 -38.84 -0.34 -4.91 16 16 C 0.12 3.35 5.55 -106.85 -0.59 2.76 16 17 C -0.46 -12.84 9.06 -37.74 -0.34 -13.18 16 18 H 0.08 2.05 7.87 -52.49 -0.41 1.63 16 19 C 0.07 1.94 5.25 -17.34 -0.09 1.85 16 20 N -0.80 -21.71 10.82 55.55 0.60 -21.11 16 21 Si 0.91 19.67 29.57 -169.99 -5.03 14.65 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 24 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 25 C -0.21 -5.44 8.39 -38.69 -0.32 -5.77 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 1.03 7.84 -51.93 -0.41 0.63 16 28 H 0.06 1.19 5.65 -51.92 -0.29 0.90 16 29 H 0.07 0.87 7.73 -51.93 -0.40 0.47 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.04 0.23 8.14 -51.92 -0.42 -0.20 16 35 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.40 4.42 8.40 -40.82 -0.34 4.08 16 37 H 0.39 5.65 8.83 -40.82 -0.36 5.29 16 38 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 39 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 40 H 0.12 3.31 6.18 -52.49 -0.32 2.99 16 41 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 42 H 0.11 2.95 6.44 -52.49 -0.34 2.62 16 LS Contribution 344.06 15.07 5.18 5.18 Total: -1.00 -31.85 344.06 -8.39 -40.24 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -6.21 Total: 13.08 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -2.28 Total: -12.41 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.23 Total: -44.11 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.28 Total: -16.62 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.03 Total: 14.65 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.85 -8.39 -40.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455911531.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.655 kcal (2) G-P(sol) polarization free energy of solvation -31.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds