Wall clock time and date at job start Tue Mar 31 2020 07:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46856 * 2 1 4 4 H 1.09003 * 109.47487 * 55.00149 * 3 2 1 5 5 C 1.53005 * 109.47062 * 174.99920 * 3 2 1 6 6 O 1.42902 * 109.46836 * 54.99811 * 5 3 2 7 7 C 1.42897 * 114.00014 * 179.97438 * 6 5 3 8 8 N 1.46500 * 109.47429 * 294.99922 * 3 2 1 9 9 C 1.34777 * 119.99968 * 84.99991 * 8 3 2 10 10 O 1.21591 * 120.00219 * 0.02562 * 9 8 3 11 11 N 1.34777 * 119.99866 * 180.02562 * 9 8 3 12 12 C 1.39959 * 119.99821 * 174.82911 * 11 9 8 13 13 C 1.39281 * 119.94674 * 146.38995 * 12 11 9 14 14 C 1.38493 * 120.42999 * 179.97438 * 13 12 11 15 15 C 1.37688 * 120.31724 * 0.02562 * 14 13 12 16 16 C 1.40739 * 119.88493 * 0.02562 * 15 14 13 17 17 C 1.41405 * 120.21129 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00522 * 151.76489 * 17 16 15 19 19 C 1.39939 * 120.00012 * 331.76226 * 17 16 15 20 20 N 1.30834 * 119.99543 * 348.99595 * 19 17 16 21 21 Si 1.86793 * 120.00248 * 168.99565 * 19 17 16 22 22 H 1.48503 * 109.47334 * 60.00250 * 21 19 17 23 23 H 1.48496 * 109.47122 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47371 * 299.99989 * 21 19 17 25 25 C 1.38234 * 119.94493 * 326.10111 * 12 11 9 26 26 H 1.08992 * 109.47304 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47076 * 300.00150 * 1 2 3 28 28 H 1.09007 * 109.47383 * 59.99846 * 1 2 3 29 29 H 1.08995 * 109.46875 * 240.00307 * 2 1 3 30 30 H 1.09001 * 109.46627 * 119.99771 * 2 1 3 31 31 H 1.08997 * 109.47065 * 295.00144 * 5 3 2 32 32 H 1.08996 * 109.47103 * 174.99860 * 5 3 2 33 33 H 1.08998 * 109.47492 * 180.02562 * 7 6 5 34 34 H 1.09010 * 109.46924 * 60.00158 * 7 6 5 35 35 H 1.08994 * 109.47334 * 300.00803 * 7 6 5 36 36 H 0.97002 * 119.99762 * 265.00118 * 8 3 2 37 37 H 0.96999 * 119.99728 * 354.82111 * 11 9 8 38 38 H 1.08005 * 119.78605 * 359.96965 * 13 12 11 39 39 H 1.07997 * 119.84020 * 180.02562 * 14 13 12 40 40 H 1.07996 * 120.05364 * 180.02562 * 15 14 13 41 41 H 0.97004 * 119.99705 * 179.97438 * 20 19 17 42 42 H 1.08002 * 120.16077 * 0.02562 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1257 6 8 4.1293 0.6404 -0.9121 7 6 5.5565 0.5752 -0.8856 8 7 1.6524 2.0975 -1.2518 9 6 0.4351 2.6644 -1.3669 10 8 -0.3413 2.6326 -0.4317 11 7 0.0784 3.2666 -2.5187 12 6 -1.2219 3.7596 -2.6771 13 6 -1.4427 4.9080 -3.4337 14 6 -2.7252 5.4043 -3.5974 15 6 -3.7968 4.7673 -3.0129 16 6 -3.5888 3.6065 -2.2447 17 6 -4.6845 2.9465 -1.6417 18 1 -4.6399 1.8832 -1.4581 19 6 -5.8265 3.6712 -1.2828 20 7 -5.8043 4.9792 -1.3027 21 14 -7.3827 2.7711 -0.7755 22 1 -7.1022 1.9305 0.4162 23 1 -8.4408 3.7593 -0.4454 24 1 -7.8421 1.9079 -1.8931 25 6 -2.2856 3.1026 -2.0873 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8499 1.0378 1.0960 32 1 3.9355 2.4655 0.0366 33 1 5.9069 -0.0530 -1.7046 34 1 5.8833 0.1508 0.0638 35 1 5.9682 1.5784 -0.9959 36 1 2.2720 2.1232 -1.9977 37 1 0.7229 3.3583 -3.2378 38 1 -0.6083 5.4148 -3.8957 39 1 -2.8856 6.2952 -4.1864 40 1 -4.7952 5.1578 -3.1437 41 1 -6.5961 5.4815 -1.0543 42 1 -2.1158 2.2097 -1.5040 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455911531.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:38 Heat of formation + Delta-G solvation = -79.774385 kcal Electronic energy + Delta-G solvation = -23411.114845 eV Core-core repulsion = 19969.073697 eV Total energy + Delta-G solvation = -3442.041149 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.55609 -39.56958 -38.74474 -36.68644 -35.91351 -34.84820 -33.12388 -31.70458 -30.47523 -29.32199 -27.23251 -27.02496 -24.51270 -23.63002 -22.73382 -21.79698 -21.43559 -19.57943 -19.21859 -17.82440 -17.33430 -17.10767 -16.59037 -16.54960 -16.36040 -16.01200 -15.89699 -15.26275 -15.00969 -14.68236 -14.33380 -13.95678 -13.91146 -13.65899 -13.48842 -13.10332 -13.07492 -12.81319 -12.54257 -12.45782 -12.23578 -12.18413 -11.96810 -11.89914 -11.74041 -11.51657 -11.20909 -10.94854 -10.65508 -10.58014 -9.99394 -9.32073 -8.63734 -8.52829 -6.35293 0.97200 1.06911 1.36312 1.48623 1.52038 1.75441 2.22568 2.28143 2.79406 2.85282 3.36393 3.74532 3.78134 4.01986 4.24398 4.42990 4.47243 4.49887 4.60317 4.64315 4.65056 4.67011 4.73565 4.94057 4.99783 5.04583 5.09668 5.14997 5.17101 5.19069 5.27574 5.36967 5.52085 5.61648 5.77313 5.87741 6.09683 6.16185 6.22575 6.25258 6.41998 6.73347 6.98445 7.04873 7.17976 7.70185 8.40057 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.022390 B = 0.003710 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.273743 B = 7545.692070 C = 8542.561070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.118 4.118 3 C 0.163 3.837 4 H 0.083 0.917 5 C 0.063 3.937 6 O -0.405 6.405 7 C 0.026 3.974 8 N -0.720 5.720 9 C 0.694 3.306 10 O -0.605 6.605 11 N -0.674 5.674 12 C 0.177 3.823 13 C -0.249 4.249 14 C -0.093 4.093 15 C -0.196 4.196 16 C 0.088 3.912 17 C -0.502 4.502 18 H 0.064 0.936 19 C 0.032 3.968 20 N -0.833 5.833 21 Si 0.984 3.016 22 H -0.266 1.266 23 H -0.263 1.263 24 H -0.257 1.257 25 C -0.230 4.230 26 H 0.050 0.950 27 H 0.037 0.963 28 H 0.029 0.971 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.411 0.589 37 H 0.416 0.584 38 H 0.131 0.869 39 H 0.123 0.877 40 H 0.105 0.895 41 H 0.286 0.714 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.857 -6.239 0.063 20.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.156 4.156 3 C 0.058 3.942 4 H 0.101 0.899 5 C -0.014 4.014 6 O -0.324 6.324 7 C -0.070 4.070 8 N -0.377 5.377 9 C 0.395 3.605 10 O -0.484 6.484 11 N -0.322 5.322 12 C 0.083 3.917 13 C -0.271 4.271 14 C -0.111 4.111 15 C -0.216 4.216 16 C 0.086 3.914 17 C -0.532 4.532 18 H 0.082 0.918 19 C -0.181 4.181 20 N -0.460 5.460 21 Si 0.805 3.195 22 H -0.191 1.191 23 H -0.187 1.187 24 H -0.182 1.182 25 C -0.252 4.252 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.112 0.888 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.247 0.753 37 H 0.253 0.747 38 H 0.149 0.851 39 H 0.140 0.860 40 H 0.123 0.877 41 H 0.097 0.903 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 18.980 -6.197 0.857 19.984 hybrid contribution -0.260 -0.029 -0.087 0.276 sum 18.720 -6.225 0.770 19.743 Atomic orbital electron populations 1.21741 0.97190 0.99940 1.01026 1.21793 0.94324 0.96101 1.03384 1.21068 0.93541 0.93349 0.86255 0.89904 1.22789 0.90644 0.95734 0.92237 1.87874 1.21715 1.70767 1.52054 1.22906 0.79503 1.01781 1.02768 1.44952 1.14717 1.59878 1.18188 1.16158 0.82901 0.78658 0.82821 1.90988 1.52719 1.64827 1.39834 1.42384 1.12070 1.60973 1.16789 1.17273 0.82439 0.93532 0.98493 1.20451 0.97377 0.98408 1.10833 1.20828 0.92463 0.98839 0.99012 1.21353 0.98528 0.99916 1.01851 1.17832 0.91877 0.92361 0.89354 1.19716 1.00214 0.95882 1.37404 0.91816 1.26719 1.02804 0.95521 0.93060 1.69861 1.31094 1.07954 1.37045 0.85237 0.76134 0.78768 0.79399 1.19091 1.18674 1.18161 1.20952 0.91932 1.03678 1.08659 0.93084 0.94332 0.95232 0.90961 0.89408 0.89679 0.91543 0.88811 0.93040 0.93227 0.75296 0.74721 0.85150 0.85951 0.87698 0.90296 0.89529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.62 8.51 71.98 0.61 -4.01 16 2 C -0.12 -2.80 5.33 30.59 0.16 -2.64 16 3 C 0.16 3.76 2.66 44.99 0.12 3.88 16 4 H 0.08 2.26 7.58 -2.39 -0.02 2.24 16 5 C 0.06 0.95 5.68 71.98 0.41 1.36 16 6 O -0.40 -6.39 9.65 -148.98 -1.44 -7.83 16 7 C 0.03 0.26 11.01 113.37 1.25 1.50 16 8 N -0.72 -18.61 5.02 -457.80 -2.30 -20.90 16 9 C 0.69 25.55 6.86 179.05 1.23 26.78 16 10 O -0.61 -28.59 11.19 -4.00 -0.04 -28.63 16 11 N -0.67 -24.08 5.35 -317.32 -1.70 -25.77 16 12 C 0.18 8.16 6.26 38.09 0.24 8.40 16 13 C -0.25 -10.71 9.97 22.58 0.23 -10.49 16 14 C -0.09 -4.34 10.02 22.20 0.22 -4.11 16 15 C -0.20 -10.86 8.66 22.75 0.20 -10.66 16 16 C 0.09 5.22 5.55 -21.31 -0.12 5.10 16 17 C -0.50 -29.87 9.06 23.46 0.21 -29.66 16 18 H 0.06 3.75 7.87 -2.91 -0.02 3.73 16 19 C 0.03 1.76 5.25 85.25 0.45 2.20 16 20 N -0.83 -46.51 10.82 21.83 0.24 -46.27 16 21 Si 0.98 41.49 29.57 68.60 2.03 43.52 16 22 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 23 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 24 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 25 C -0.23 -12.73 8.39 22.85 0.19 -12.54 16 26 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.04 1.39 7.84 -2.38 -0.02 1.37 16 28 H 0.03 1.15 5.65 -2.38 -0.01 1.13 16 29 H 0.07 1.70 7.73 -2.39 -0.02 1.68 16 30 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.05 0.39 8.14 -2.38 -0.02 0.37 16 35 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.41 8.18 8.40 -92.71 -0.78 7.40 16 37 H 0.42 10.87 8.83 -92.71 -0.82 10.05 16 38 H 0.13 4.49 8.06 -2.91 -0.02 4.46 16 39 H 0.12 4.87 8.06 -2.91 -0.02 4.84 16 40 H 0.11 6.02 6.18 -2.91 -0.02 6.00 16 41 H 0.29 14.44 8.30 -92.71 -0.77 13.67 16 42 H 0.09 5.08 6.44 -2.91 -0.02 5.06 16 Total: -1.00 -74.00 344.06 1.63 -72.37 By element: Atomic # 1 Polarization: 38.96 SS G_CDS: -0.56 Total: 38.40 kcal Atomic # 6 Polarization: -30.27 SS G_CDS: 5.40 Total: -24.88 kcal Atomic # 7 Polarization: -89.19 SS G_CDS: -3.76 Total: -92.95 kcal Atomic # 8 Polarization: -34.98 SS G_CDS: -1.48 Total: -36.46 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -74.00 1.63 -72.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455911531.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.407 kcal (2) G-P(sol) polarization free energy of solvation -73.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds