Wall clock time and date at job start Tue Mar 31 2020 07:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46873 * 2 1 4 4 N 1.46499 * 109.46819 * 119.99510 * 2 1 3 5 5 C 1.46503 * 119.99683 * 112.48485 * 4 2 1 6 6 C 1.53003 * 109.46975 * 272.64569 * 5 4 2 7 7 O 1.42896 * 109.46882 * 54.14066 * 6 5 4 8 8 C 1.34777 * 120.00536 * 292.48237 * 4 2 1 9 9 O 1.21587 * 120.00189 * 186.02221 * 8 4 2 10 10 N 1.34774 * 119.99844 * 6.01785 * 8 4 2 11 11 C 1.39959 * 120.00092 * 185.48873 * 10 8 4 12 12 C 1.39283 * 119.94410 * 334.36416 * 11 10 8 13 13 C 1.38485 * 120.43206 * 180.02562 * 12 11 10 14 14 C 1.37684 * 120.31672 * 0.28352 * 13 12 11 15 15 C 1.40748 * 119.88351 * 359.45236 * 14 13 12 16 16 C 1.41406 * 120.20862 * 180.27350 * 15 14 13 17 17 H 1.08006 * 119.99663 * 207.66590 * 16 15 14 18 18 C 1.39934 * 120.00416 * 27.66529 * 16 15 14 19 19 N 1.30827 * 119.99657 * 10.43687 * 18 16 15 20 20 Si 1.86798 * 119.99952 * 190.43874 * 18 16 15 21 21 H 1.48498 * 109.47107 * 60.00120 * 20 18 16 22 22 H 1.48504 * 109.46730 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47149 * 299.99562 * 20 18 16 24 24 C 1.38233 * 119.94814 * 154.39198 * 11 10 8 25 25 H 1.08996 * 109.47585 * 304.81258 * 1 2 3 26 26 H 1.09000 * 109.47074 * 64.81341 * 1 2 3 27 27 H 1.09000 * 109.47000 * 184.80669 * 1 2 3 28 28 H 1.08994 * 109.47466 * 239.99855 * 2 1 3 29 29 H 1.08999 * 109.47102 * 188.03643 * 3 2 1 30 30 H 1.08992 * 109.47047 * 308.04199 * 3 2 1 31 31 H 1.09000 * 109.46996 * 68.03964 * 3 2 1 32 32 H 1.09001 * 109.47050 * 32.64189 * 5 4 2 33 33 H 1.08998 * 109.47115 * 152.64629 * 5 4 2 34 34 H 1.08998 * 109.47117 * 174.14157 * 6 5 4 35 35 H 1.08997 * 109.46819 * 294.13837 * 6 5 4 36 36 H 0.96705 * 113.99636 * 179.97438 * 7 6 5 37 37 H 0.96997 * 120.00069 * 5.48626 * 10 8 4 38 38 H 1.07998 * 119.78691 * 0.05024 * 12 11 10 39 39 H 1.07997 * 119.84280 * 180.02562 * 13 12 11 40 40 H 1.08004 * 120.05840 * 179.70074 * 14 13 12 41 41 H 0.96999 * 119.99800 * 179.97438 * 19 18 16 42 42 H 1.07999 * 120.15864 * 359.95264 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0182 -0.6905 1.1962 5 6 2.7198 -1.9702 1.0682 6 6 1.7015 -3.1122 1.0663 7 8 0.7236 -2.8766 0.0513 8 6 1.8221 -0.1486 2.4146 9 8 2.3208 -0.6636 3.3965 10 7 1.0731 0.9644 2.5443 11 6 0.9632 1.5926 3.7901 12 6 1.1405 0.8555 4.9586 13 6 1.0335 1.4668 6.1966 14 6 0.7448 2.8100 6.2859 15 6 0.5686 3.5688 5.1136 16 6 0.2776 4.9501 5.1972 17 1 -0.2791 5.4334 4.4079 18 6 0.7108 5.6909 6.3025 19 7 1.5528 5.1637 7.1538 20 14 0.0869 7.4323 6.5624 21 1 -1.3915 7.4129 6.7007 22 1 0.6926 7.9962 7.7955 23 1 0.4642 8.2723 5.3974 24 6 0.6785 2.9436 3.8590 25 1 -0.3634 0.5866 0.8437 26 1 -0.3633 0.4373 -0.9300 27 1 -0.3633 -1.0241 0.0861 28 1 1.8933 -0.5138 -0.8899 29 1 3.1204 1.4460 -0.1437 30 1 1.5640 1.9962 -0.8093 31 1 1.7987 1.9132 0.9531 32 1 3.2829 -1.9840 0.1350 33 1 3.4041 -2.0950 1.9074 34 1 2.2123 -4.0542 0.8670 35 1 1.2112 -3.1633 2.0384 36 1 0.0448 -3.5628 -0.0077 37 1 0.6102 1.3300 1.7743 38 1 1.3631 -0.1996 4.8987 39 1 1.1732 0.8862 7.0965 40 1 0.6576 3.2815 7.2536 41 1 1.8534 5.6773 7.9198 42 1 0.5412 3.5160 2.9535 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455917076.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:59 Heat of formation + Delta-G solvation = -33.116324 kcal Electronic energy + Delta-G solvation = -23973.792027 eV Core-core repulsion = 20533.774124 eV Total energy + Delta-G solvation = -3440.017903 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 4.99 seconds Orbital eigenvalues (eV) -40.57277 -37.78280 -36.82476 -36.06430 -34.51720 -33.02869 -31.95188 -29.70872 -29.06101 -27.58177 -27.17657 -25.15098 -23.24269 -22.29329 -21.13528 -20.54793 -19.33616 -17.80404 -17.63342 -16.64984 -16.24291 -15.48474 -15.26063 -14.74361 -14.60529 -14.49210 -14.28782 -13.96020 -13.62281 -13.15355 -12.88356 -12.78352 -12.30104 -12.19495 -12.13806 -12.02428 -11.60269 -11.39446 -11.16711 -11.09198 -11.06969 -10.89444 -10.77535 -10.52236 -10.15803 -10.10210 -9.46608 -9.30425 -9.14370 -8.72921 -8.50876 -7.33923 -6.74638 -6.56300 -4.29638 2.83130 2.90407 2.99250 3.11443 3.14290 3.30396 3.73550 4.00074 4.13053 4.22594 4.77528 4.85640 4.97455 5.01220 5.17718 5.24113 5.26470 5.56200 5.62839 5.72954 5.74291 5.77138 5.81766 5.85508 6.20059 6.35769 6.36644 6.60958 6.69709 6.86459 7.00669 7.12242 7.14055 7.33532 7.41768 7.46414 7.72595 7.88985 8.13045 8.24043 8.34701 8.51025 8.73047 8.97720 9.01996 9.11732 10.32917 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028355 B = 0.003774 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.259533 B = 7416.580679 C = 7995.536987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.145 3.855 3 C -0.194 4.194 4 N -0.621 5.621 5 C 0.135 3.865 6 C 0.057 3.943 7 O -0.565 6.565 8 C 0.704 3.296 9 O -0.574 6.574 10 N -0.679 5.679 11 C 0.162 3.838 12 C -0.236 4.236 13 C -0.099 4.099 14 C -0.167 4.167 15 C 0.123 3.877 16 C -0.466 4.466 17 H 0.074 0.926 18 C 0.074 3.926 19 N -0.803 5.803 20 Si 0.910 3.090 21 H -0.265 1.265 22 H -0.279 1.279 23 H -0.267 1.267 24 C -0.249 4.249 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.374 0.626 37 H 0.402 0.598 38 H 0.125 0.875 39 H 0.090 0.910 40 H 0.122 0.878 41 H 0.278 0.722 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.896 -11.119 -13.758 17.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.041 3.959 3 C -0.252 4.252 4 N -0.359 5.359 5 C 0.011 3.989 6 C -0.022 4.022 7 O -0.370 6.370 8 C 0.406 3.594 9 O -0.452 6.452 10 N -0.331 5.331 11 C 0.069 3.931 12 C -0.257 4.257 13 C -0.118 4.118 14 C -0.187 4.187 15 C 0.120 3.880 16 C -0.497 4.497 17 H 0.092 0.908 18 C -0.142 4.142 19 N -0.430 5.430 20 Si 0.735 3.265 21 H -0.190 1.190 22 H -0.204 1.204 23 H -0.192 1.192 24 C -0.271 4.271 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.100 0.900 28 H 0.109 0.891 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.118 0.882 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.220 0.780 37 H 0.244 0.756 38 H 0.143 0.857 39 H 0.108 0.892 40 H 0.139 0.861 41 H 0.089 0.911 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.002 -10.893 -12.970 16.937 hybrid contribution -0.676 0.525 -0.189 0.877 sum -0.678 -10.368 -13.159 16.766 Atomic orbital electron populations 1.22463 0.95352 1.04011 1.01600 1.20969 0.94274 0.92588 0.88095 1.22652 1.02194 0.96311 1.04069 1.47204 1.61294 1.22732 1.04682 1.21372 0.93275 0.81168 1.03119 1.22698 0.90852 0.97560 0.91085 1.86498 1.41792 1.51399 1.57312 1.15975 0.79528 0.80800 0.83052 1.90824 1.54638 1.63676 1.36030 1.43551 1.50110 1.27566 1.11831 1.17419 1.01488 0.91317 0.82830 1.20939 1.13700 1.00231 0.90793 1.20676 1.00378 0.95226 0.95532 1.21466 1.05714 0.92162 0.99366 1.17332 0.87965 0.92831 0.89890 1.19456 1.32075 0.93520 1.04635 0.90762 1.25855 0.93120 1.00392 0.94845 1.69803 1.23721 1.38129 1.11328 0.86345 0.79996 0.81824 0.78311 1.18991 1.20445 1.19192 1.20638 1.17349 0.91632 0.97524 0.92711 0.91781 0.89969 0.89109 0.92015 0.91125 0.90322 0.90482 0.88200 0.93093 0.93207 0.77998 0.75564 0.85745 0.89215 0.86054 0.91062 0.89002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.96 9.02 37.16 0.34 -1.62 16 2 C 0.14 1.68 2.61 -67.93 -0.18 1.50 16 3 C -0.19 -2.32 8.92 37.16 0.33 -1.98 16 4 N -0.62 -8.83 2.31 -171.80 -0.40 -9.23 16 5 C 0.13 1.57 5.97 -4.04 -0.02 1.55 16 6 C 0.06 0.56 7.46 37.16 0.28 0.84 16 7 O -0.57 -5.13 10.43 -35.23 -0.37 -5.50 16 8 C 0.70 13.33 7.55 -86.92 -0.66 12.67 16 9 O -0.57 -12.84 12.73 5.29 0.07 -12.77 16 10 N -0.68 -13.17 3.67 -14.27 -0.05 -13.23 16 11 C 0.16 3.86 6.45 -83.76 -0.54 3.32 16 12 C -0.24 -5.90 8.82 -39.10 -0.34 -6.25 16 13 C -0.10 -2.51 10.02 -39.69 -0.40 -2.91 16 14 C -0.17 -4.54 8.67 -38.84 -0.34 -4.88 16 15 C 0.12 3.36 5.56 -106.85 -0.59 2.76 16 16 C -0.47 -12.59 9.07 -37.74 -0.34 -12.93 16 17 H 0.07 1.91 7.87 -52.48 -0.41 1.49 16 18 C 0.07 1.90 5.27 -17.34 -0.09 1.81 16 19 N -0.80 -21.42 10.75 55.55 0.60 -20.83 16 20 Si 0.91 19.09 29.57 -169.99 -5.03 14.07 16 21 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 22 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 24 C -0.25 -6.23 9.68 -38.69 -0.37 -6.61 16 25 H 0.05 0.70 5.42 -51.93 -0.28 0.42 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 0.94 5.83 -51.93 -0.30 0.64 16 28 H 0.09 0.92 7.79 -51.93 -0.40 0.52 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 31 H 0.08 1.16 4.78 -51.93 -0.25 0.91 16 32 H 0.08 0.73 7.92 -51.93 -0.41 0.31 16 33 H 0.10 1.28 7.27 -51.93 -0.38 0.91 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.37 1.95 9.12 45.56 0.42 2.36 16 37 H 0.40 6.70 3.43 -40.82 -0.14 6.56 16 38 H 0.12 3.14 5.45 -52.49 -0.29 2.85 16 39 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 40 H 0.12 3.38 6.11 -52.48 -0.32 3.06 16 41 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 42 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 LS Contribution 331.95 15.07 5.00 5.00 Total: -1.00 -32.08 331.95 -7.98 -40.06 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -4.86 Total: 15.16 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -2.94 Total: -12.73 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: 0.15 Total: -43.28 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.30 Total: -18.27 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.08 -7.98 -40.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455917076.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.940 kcal (2) G-P(sol) polarization free energy of solvation -32.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.99 seconds