Wall clock time and date at job start Tue Mar 31 2020 07:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46873 * 2 1 4 4 N 1.46499 * 109.46819 * 119.99510 * 2 1 3 5 5 C 1.46503 * 119.99683 * 112.48485 * 4 2 1 6 6 C 1.53003 * 109.46975 * 272.64569 * 5 4 2 7 7 O 1.42896 * 109.46882 * 54.14066 * 6 5 4 8 8 C 1.34777 * 120.00536 * 292.48237 * 4 2 1 9 9 O 1.21587 * 120.00189 * 186.02221 * 8 4 2 10 10 N 1.34774 * 119.99844 * 6.01785 * 8 4 2 11 11 C 1.39959 * 120.00092 * 185.48873 * 10 8 4 12 12 C 1.39283 * 119.94410 * 334.36416 * 11 10 8 13 13 C 1.38485 * 120.43206 * 180.02562 * 12 11 10 14 14 C 1.37684 * 120.31672 * 0.28352 * 13 12 11 15 15 C 1.40748 * 119.88351 * 359.45236 * 14 13 12 16 16 C 1.41406 * 120.20862 * 180.27350 * 15 14 13 17 17 H 1.08006 * 119.99663 * 207.66590 * 16 15 14 18 18 C 1.39934 * 120.00416 * 27.66529 * 16 15 14 19 19 N 1.30827 * 119.99657 * 10.43687 * 18 16 15 20 20 Si 1.86798 * 119.99952 * 190.43874 * 18 16 15 21 21 H 1.48498 * 109.47107 * 60.00120 * 20 18 16 22 22 H 1.48504 * 109.46730 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47149 * 299.99562 * 20 18 16 24 24 C 1.38233 * 119.94814 * 154.39198 * 11 10 8 25 25 H 1.08996 * 109.47585 * 304.81258 * 1 2 3 26 26 H 1.09000 * 109.47074 * 64.81341 * 1 2 3 27 27 H 1.09000 * 109.47000 * 184.80669 * 1 2 3 28 28 H 1.08994 * 109.47466 * 239.99855 * 2 1 3 29 29 H 1.08999 * 109.47102 * 188.03643 * 3 2 1 30 30 H 1.08992 * 109.47047 * 308.04199 * 3 2 1 31 31 H 1.09000 * 109.46996 * 68.03964 * 3 2 1 32 32 H 1.09001 * 109.47050 * 32.64189 * 5 4 2 33 33 H 1.08998 * 109.47115 * 152.64629 * 5 4 2 34 34 H 1.08998 * 109.47117 * 174.14157 * 6 5 4 35 35 H 1.08997 * 109.46819 * 294.13837 * 6 5 4 36 36 H 0.96705 * 113.99636 * 179.97438 * 7 6 5 37 37 H 0.96997 * 120.00069 * 5.48626 * 10 8 4 38 38 H 1.07998 * 119.78691 * 0.05024 * 12 11 10 39 39 H 1.07997 * 119.84280 * 180.02562 * 13 12 11 40 40 H 1.08004 * 120.05840 * 179.70074 * 14 13 12 41 41 H 0.96999 * 119.99800 * 179.97438 * 19 18 16 42 42 H 1.07999 * 120.15864 * 359.95264 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0182 -0.6905 1.1962 5 6 2.7198 -1.9702 1.0682 6 6 1.7015 -3.1122 1.0663 7 8 0.7236 -2.8766 0.0513 8 6 1.8221 -0.1486 2.4146 9 8 2.3208 -0.6636 3.3965 10 7 1.0731 0.9644 2.5443 11 6 0.9632 1.5926 3.7901 12 6 1.1405 0.8555 4.9586 13 6 1.0335 1.4668 6.1966 14 6 0.7448 2.8100 6.2859 15 6 0.5686 3.5688 5.1136 16 6 0.2776 4.9501 5.1972 17 1 -0.2791 5.4334 4.4079 18 6 0.7108 5.6909 6.3025 19 7 1.5528 5.1637 7.1538 20 14 0.0869 7.4323 6.5624 21 1 -1.3915 7.4129 6.7007 22 1 0.6926 7.9962 7.7955 23 1 0.4642 8.2723 5.3974 24 6 0.6785 2.9436 3.8590 25 1 -0.3634 0.5866 0.8437 26 1 -0.3633 0.4373 -0.9300 27 1 -0.3633 -1.0241 0.0861 28 1 1.8933 -0.5138 -0.8899 29 1 3.1204 1.4460 -0.1437 30 1 1.5640 1.9962 -0.8093 31 1 1.7987 1.9132 0.9531 32 1 3.2829 -1.9840 0.1350 33 1 3.4041 -2.0950 1.9074 34 1 2.2123 -4.0542 0.8670 35 1 1.2112 -3.1633 2.0384 36 1 0.0448 -3.5628 -0.0077 37 1 0.6102 1.3300 1.7743 38 1 1.3631 -0.1996 4.8987 39 1 1.1732 0.8862 7.0965 40 1 0.6576 3.2815 7.2536 41 1 1.8534 5.6773 7.9198 42 1 0.5412 3.5160 2.9535 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455917076.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:54 Heat of formation + Delta-G solvation = -53.647508 kcal Electronic energy + Delta-G solvation = -23974.682326 eV Core-core repulsion = 20533.774124 eV Total energy + Delta-G solvation = -3440.908202 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -41.98553 -39.39830 -38.04722 -37.19638 -36.16890 -34.80662 -33.07754 -31.71613 -30.46121 -29.03310 -28.09858 -27.14884 -24.49143 -23.35684 -22.89537 -22.31632 -20.86353 -19.49177 -18.58324 -17.82260 -17.66410 -17.15939 -16.82528 -16.34170 -16.02557 -15.86298 -15.50642 -15.15043 -14.80349 -14.67323 -14.53002 -14.03885 -13.91486 -13.52940 -13.18935 -13.16539 -13.05135 -12.85817 -12.80635 -12.72204 -12.40440 -12.33465 -12.00307 -11.93239 -11.79851 -11.39011 -11.13491 -10.97320 -10.82231 -10.53161 -9.69804 -9.36313 -8.64406 -8.48093 -6.35208 0.98506 1.01123 1.40812 1.53003 1.56075 1.67386 2.16574 2.24563 2.82057 2.88719 3.44503 3.75289 3.88025 4.08591 4.14581 4.30770 4.34792 4.41818 4.49893 4.62856 4.70613 4.80918 4.83128 4.84997 4.91471 4.96286 5.05276 5.08514 5.14879 5.17335 5.25954 5.37482 5.47964 5.64741 5.78470 5.86441 6.06231 6.12240 6.23567 6.39633 6.71825 6.91930 6.94789 6.97028 7.06700 7.56811 8.41070 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028355 B = 0.003774 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.259533 B = 7416.580679 C = 7995.536987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.142 3.858 3 C -0.192 4.192 4 N -0.610 5.610 5 C 0.124 3.876 6 C 0.067 3.933 7 O -0.573 6.573 8 C 0.697 3.303 9 O -0.614 6.614 10 N -0.672 5.672 11 C 0.173 3.827 12 C -0.251 4.251 13 C -0.100 4.100 14 C -0.194 4.194 15 C 0.097 3.903 16 C -0.498 4.498 17 H 0.080 0.920 18 C 0.031 3.969 19 N -0.835 5.835 20 Si 0.988 3.012 21 H -0.259 1.259 22 H -0.270 1.270 23 H -0.259 1.259 24 C -0.259 4.259 25 H 0.033 0.967 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.119 0.881 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.047 0.953 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.023 0.977 36 H 0.392 0.608 37 H 0.416 0.584 38 H 0.124 0.876 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.286 0.714 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.235 -11.056 -16.244 19.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.040 3.960 3 C -0.250 4.250 4 N -0.346 5.346 5 C 0.001 3.999 6 C -0.012 4.012 7 O -0.380 6.380 8 C 0.400 3.600 9 O -0.495 6.495 10 N -0.325 5.325 11 C 0.078 3.922 12 C -0.272 4.272 13 C -0.119 4.119 14 C -0.214 4.214 15 C 0.094 3.906 16 C -0.527 4.527 17 H 0.098 0.902 18 C -0.183 4.183 19 N -0.461 5.461 20 Si 0.809 3.191 21 H -0.183 1.183 22 H -0.195 1.195 23 H -0.183 1.183 24 C -0.281 4.281 25 H 0.052 0.948 26 H 0.109 0.891 27 H 0.099 0.901 28 H 0.137 0.863 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.066 0.934 32 H 0.126 0.874 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.041 0.959 36 H 0.241 0.759 37 H 0.261 0.739 38 H 0.141 0.859 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.096 0.904 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.355 -10.878 -15.538 18.970 hybrid contribution -0.531 0.382 0.460 0.799 sum -0.886 -10.496 -15.078 18.393 Atomic orbital electron populations 1.22439 0.94762 1.03768 1.02044 1.21235 0.94723 0.92457 0.87629 1.22636 1.02539 0.96546 1.03296 1.47329 1.60291 1.23305 1.03713 1.21664 0.93805 0.80506 1.03925 1.22502 0.90635 0.97925 0.90170 1.86429 1.42293 1.52712 1.56593 1.16211 0.79220 0.80391 0.84171 1.90784 1.56069 1.64682 1.37966 1.43468 1.50515 1.27759 1.10751 1.17453 0.99315 0.91074 0.84320 1.21067 1.14524 1.00351 0.91271 1.20882 0.99585 0.94895 0.96583 1.21397 1.08234 0.92899 0.98908 1.17718 0.88436 0.93642 0.90800 1.19782 1.33164 0.93835 1.05968 0.90194 1.26805 0.92632 1.04950 0.93891 1.69888 1.24343 1.40113 1.11803 0.85166 0.79464 0.75888 0.78605 1.18302 1.19495 1.18313 1.20779 1.17656 0.92287 0.97425 0.94819 0.89095 0.90108 0.86330 0.92017 0.88429 0.93397 0.87389 0.89962 0.90052 0.95861 0.75872 0.73912 0.85883 0.87560 0.87496 0.90366 0.87493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.37 9.02 71.98 0.65 -2.72 16 2 C 0.14 2.90 2.61 44.99 0.12 3.02 16 3 C -0.19 -4.15 8.92 71.98 0.64 -3.50 16 4 N -0.61 -16.46 2.31 -815.71 -1.89 -18.35 16 5 C 0.12 2.66 5.97 86.38 0.52 3.18 16 6 C 0.07 1.17 7.46 71.98 0.54 1.71 16 7 O -0.57 -8.68 10.43 -148.98 -1.55 -10.23 16 8 C 0.70 26.44 7.55 179.06 1.35 27.79 16 9 O -0.61 -28.09 12.73 -3.99 -0.05 -28.14 16 10 N -0.67 -26.17 3.67 -317.33 -1.16 -27.34 16 11 C 0.17 8.40 6.45 38.09 0.25 8.65 16 12 C -0.25 -12.95 8.82 22.58 0.20 -12.75 16 13 C -0.10 -5.28 10.02 22.20 0.22 -5.06 16 14 C -0.19 -10.98 8.67 22.75 0.20 -10.78 16 15 C 0.10 5.47 5.56 -21.31 -0.12 5.35 16 16 C -0.50 -27.38 9.07 23.46 0.21 -27.16 16 17 H 0.08 4.15 7.87 -2.91 -0.02 4.12 16 18 C 0.03 1.58 5.27 85.25 0.45 2.03 16 19 N -0.83 -45.42 10.75 21.82 0.23 -45.19 16 20 Si 0.99 38.94 29.57 68.60 2.03 40.97 16 21 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 22 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 23 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 24 C -0.26 -13.24 9.68 22.85 0.22 -13.02 16 25 H 0.03 0.81 5.42 -2.39 -0.01 0.79 16 26 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.08 1.64 5.83 -2.39 -0.01 1.62 16 28 H 0.12 1.87 7.79 -2.39 -0.02 1.86 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.10 1.57 8.13 -2.39 -0.02 1.55 16 31 H 0.05 1.36 4.78 -2.39 -0.01 1.35 16 32 H 0.11 1.67 7.92 -2.39 -0.02 1.65 16 33 H 0.08 2.08 7.27 -2.39 -0.02 2.06 16 34 H 0.08 0.96 8.14 -2.39 -0.02 0.95 16 35 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.39 2.93 9.12 -74.05 -0.68 2.25 16 37 H 0.42 13.68 3.43 -92.71 -0.32 13.36 16 38 H 0.12 6.40 5.45 -2.91 -0.02 6.39 16 39 H 0.11 5.05 8.06 -2.91 -0.02 5.02 16 40 H 0.11 6.25 6.11 -2.91 -0.02 6.23 16 41 H 0.29 14.13 8.30 -92.71 -0.77 13.36 16 42 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 Total: -1.00 -71.76 331.95 3.11 -68.64 By element: Atomic # 1 Polarization: 42.85 SS G_CDS: 0.06 Total: 42.92 kcal Atomic # 6 Polarization: -28.72 SS G_CDS: 5.44 Total: -23.28 kcal Atomic # 7 Polarization: -88.06 SS G_CDS: -2.82 Total: -90.88 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -1.61 Total: -38.37 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Total: -71.76 3.11 -68.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455917076.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.997 kcal (2) G-P(sol) polarization free energy of solvation -71.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds