Wall clock time and date at job start Tue Mar 31 2020 06:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47059 * 2 1 4 4 C 1.53001 * 109.47216 * 179.97438 * 3 2 1 5 5 O 1.42895 * 109.47278 * 179.97438 * 4 3 2 6 6 C 1.35902 * 116.99624 * 179.97438 * 5 4 3 7 7 C 1.38806 * 120.02584 * 359.73027 * 6 5 4 8 8 C 1.38160 * 120.08385 * 179.69589 * 7 6 5 9 9 C 1.38167 * 120.12512 * 0.60150 * 8 7 6 10 10 C 1.38887 * 120.04158 * 359.67225 * 9 8 7 11 11 N 1.39931 * 120.04471 * 180.02562 * 10 9 8 12 12 C 1.34784 * 120.00054 * 213.28010 * 11 10 9 13 13 O 1.21585 * 119.99808 * 5.31519 * 12 11 10 14 14 N 1.34777 * 119.99625 * 185.31577 * 12 11 10 15 15 C 1.46508 * 119.99454 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.46750 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00358 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99802 * 179.97438 * 16 15 14 19 19 N 1.31507 * 119.99915 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99899 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47140 * 60.00485 * 20 18 16 22 22 H 1.48497 * 109.47005 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.46917 * 300.00166 * 20 18 16 24 24 C 1.38591 * 120.01384 * 180.02562 * 6 5 4 25 25 H 1.09004 * 109.46985 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47133 * 300.00253 * 1 2 3 27 27 H 1.09006 * 109.46484 * 60.00365 * 1 2 3 28 28 H 1.08996 * 109.47133 * 239.99746 * 2 1 3 29 29 H 1.09006 * 109.46484 * 119.99635 * 2 1 3 30 30 H 1.08996 * 109.47355 * 59.99883 * 3 2 1 31 31 H 1.08992 * 109.46896 * 299.99691 * 3 2 1 32 32 H 1.09007 * 109.46974 * 59.99450 * 4 3 2 33 33 H 1.09002 * 109.46892 * 300.00308 * 4 3 2 34 34 H 1.07997 * 119.95149 * 359.97143 * 7 6 5 35 35 H 1.07998 * 119.94182 * 180.27555 * 8 7 6 36 36 H 1.08003 * 119.98611 * 179.70083 * 9 8 7 37 37 H 0.96999 * 120.00107 * 33.27859 * 11 10 9 38 38 H 0.96997 * 120.00215 * 359.97438 * 14 12 11 39 39 H 1.09000 * 109.46956 * 300.00053 * 15 14 12 40 40 H 1.08997 * 109.46868 * 60.00296 * 15 14 12 41 41 H 0.97004 * 119.99814 * 179.97438 * 19 18 16 42 42 H 1.07992 * 120.06468 * 359.97438 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.3937 2.9678 0.0010 7 6 6.2396 1.8673 0.0082 8 6 7.6095 2.0468 0.0029 9 6 8.1418 3.3218 0.0030 10 6 7.3002 4.4267 0.0015 11 7 7.8392 5.7180 0.0010 12 6 7.1978 6.7163 0.6403 13 8 6.2034 6.4771 1.2978 14 7 7.6588 7.9796 0.5507 15 6 6.9612 9.0648 1.2451 16 6 7.6740 10.3669 0.9859 17 1 8.5579 10.3846 0.3656 18 6 7.1971 11.5360 1.5398 19 7 6.1205 11.5146 2.2947 20 14 8.0803 13.1503 1.2179 21 1 8.0942 13.4245 -0.2415 22 1 7.3733 14.2502 1.9218 23 1 9.4756 13.0594 1.7179 24 6 5.9238 4.2483 0.0011 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9562 -0.8900 32 1 3.9337 0.9285 -0.8891 33 1 3.9330 0.9288 0.8909 34 1 5.8264 0.8695 0.0135 35 1 8.2656 1.1889 0.0040 36 1 9.2130 3.4595 0.0037 37 1 8.6745 5.8947 -0.4594 38 1 8.4523 8.1703 0.0265 39 1 5.9369 9.1315 0.8784 40 1 6.9513 8.8634 2.3163 41 1 5.7852 12.3371 2.6847 42 1 5.2672 5.1056 -0.0001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488340241.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:59 Heat of formation + Delta-G solvation = -59.292259 kcal Electronic energy + Delta-G solvation = -22126.015332 eV Core-core repulsion = 18684.862355 eV Total energy + Delta-G solvation = -3441.152977 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.42944 -39.38237 -37.47984 -35.40265 -34.38930 -33.97819 -32.34933 -30.74953 -29.34872 -28.92398 -26.98772 -24.32334 -23.26003 -22.49320 -21.61608 -21.21334 -20.16717 -18.41445 -18.15828 -16.51887 -16.27165 -16.08984 -15.79144 -15.60773 -14.96609 -14.78319 -14.75520 -14.09957 -13.77425 -13.66030 -13.41196 -13.15330 -13.00234 -12.56913 -12.27139 -11.98981 -11.87229 -11.78243 -11.56304 -11.42333 -11.20804 -10.99967 -10.94156 -10.89899 -10.76454 -10.31360 -10.00118 -9.45888 -9.41442 -8.75368 -8.24304 -8.05851 -7.72415 -6.16752 -4.23974 1.43352 1.55259 2.97018 3.25427 3.28216 3.30969 3.35376 3.64229 4.05925 4.31470 4.56735 4.58638 4.73178 4.87307 4.93574 4.94753 5.03742 5.15148 5.19290 5.22875 5.26067 5.41452 5.45912 5.46966 5.57346 5.65728 5.78840 5.89018 5.96519 6.01323 6.35625 6.37318 6.50217 6.56551 7.05181 7.09317 7.40192 7.49255 7.52558 7.53032 7.82336 7.98680 8.68244 8.83383 9.19370 9.43038 10.93347 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019957 B = 0.002637 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.666046 B =10614.896818 C =11881.358972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.122 4.122 4 C 0.060 3.940 5 O -0.312 6.312 6 C 0.149 3.851 7 C -0.237 4.237 8 C -0.062 4.062 9 C -0.193 4.193 10 C 0.221 3.779 11 N -0.694 5.694 12 C 0.689 3.311 13 O -0.577 6.577 14 N -0.721 5.721 15 C 0.266 3.734 16 C -0.545 4.545 17 H 0.063 0.937 18 C 0.064 3.936 19 N -0.884 5.884 20 Si 0.905 3.095 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 C -0.157 4.157 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.405 0.595 38 H 0.388 0.612 39 H 0.028 0.972 40 H 0.027 0.973 41 H 0.267 0.733 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.501 -23.153 -7.221 24.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.159 4.159 4 C -0.015 4.015 5 O -0.226 6.226 6 C 0.103 3.897 7 C -0.257 4.257 8 C -0.081 4.081 9 C -0.215 4.215 10 C 0.124 3.876 11 N -0.342 5.342 12 C 0.389 3.611 13 O -0.455 6.455 14 N -0.373 5.373 15 C 0.145 3.855 16 C -0.583 4.583 17 H 0.081 0.919 18 C -0.140 4.140 19 N -0.522 5.522 20 Si 0.733 3.267 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.178 4.178 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.240 0.760 38 H 0.221 0.779 39 H 0.046 0.954 40 H 0.045 0.955 41 H 0.077 0.923 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.730 -22.928 -6.466 23.978 hybrid contribution 1.370 0.904 -0.521 1.722 sum -1.360 -22.024 -6.987 23.146 Atomic orbital electron populations 1.21755 0.95224 1.01746 1.02240 1.21428 0.96417 0.95700 1.02272 1.21594 0.92697 0.97611 1.04035 1.22804 0.95287 0.82216 1.01210 1.86088 1.19187 1.28777 1.88542 1.18719 0.82111 0.93515 0.95358 1.21087 0.94354 0.97657 1.12556 1.20589 0.94161 0.96326 0.97024 1.20744 0.99291 0.91486 1.09934 1.17159 0.91357 0.83625 0.95475 1.42864 1.27416 1.06808 1.57136 1.16190 0.83497 0.81085 0.80359 1.90921 1.26877 1.82575 1.45078 1.45787 1.31991 1.05565 1.53968 1.19057 0.92502 0.81644 0.92294 1.21167 1.12729 0.91760 1.32644 0.91915 1.24947 0.94998 0.99353 0.94706 1.69965 1.21935 1.28466 1.31786 0.86450 0.79560 0.82274 0.78466 1.20062 1.21055 1.20082 1.20422 0.94269 0.95959 1.07154 0.92574 0.92446 0.92517 0.91773 0.91717 0.90619 0.90737 0.92203 0.92130 0.85905 0.85759 0.85778 0.76000 0.77902 0.95443 0.95494 0.92335 0.83577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.57 16 2 C -0.12 -0.79 5.93 -26.73 -0.16 -0.95 16 3 C -0.12 -1.06 5.58 -26.73 -0.15 -1.21 16 4 C 0.06 0.60 4.74 37.16 0.18 0.78 16 5 O -0.31 -4.57 10.13 -19.43 -0.20 -4.76 16 6 C 0.15 2.26 6.68 -39.24 -0.26 2.00 16 7 C -0.24 -2.90 9.04 -39.40 -0.36 -3.25 16 8 C -0.06 -0.70 10.03 -39.64 -0.40 -1.10 16 9 C -0.19 -2.43 9.96 -39.37 -0.39 -2.82 16 10 C 0.22 3.49 6.28 -83.71 -0.53 2.96 16 11 N -0.69 -10.97 5.35 -14.24 -0.08 -11.05 16 12 C 0.69 14.36 8.30 -86.91 -0.72 13.64 16 13 O -0.58 -14.48 14.02 5.29 0.07 -14.41 16 14 N -0.72 -15.30 5.55 -66.41 -0.37 -15.67 16 15 C 0.27 7.08 5.43 -5.19 -0.03 7.06 16 16 C -0.54 -14.75 9.28 -34.44 -0.32 -15.07 16 17 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 19 N -0.88 -26.11 13.29 55.43 0.74 -25.37 16 20 Si 0.91 20.83 29.54 -169.99 -5.02 15.80 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 C -0.16 -2.75 8.59 -39.25 -0.34 -3.09 16 25 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.51 7.67 -51.92 -0.40 0.11 16 33 H 0.06 0.55 7.65 -51.93 -0.40 0.15 16 34 H 0.12 1.18 6.29 -52.49 -0.33 0.85 16 35 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 37 H 0.40 4.79 8.83 -40.82 -0.36 4.43 16 38 H 0.39 6.90 8.34 -40.82 -0.34 6.56 16 39 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.15 3.00 6.41 -52.49 -0.34 2.66 16 LS Contribution 354.91 15.07 5.35 5.35 Total: -1.00 -33.33 354.91 -9.05 -42.39 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -6.35 Total: 7.66 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -3.20 Total: 0.06 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: 0.29 Total: -52.09 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.12 Total: -19.17 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.33 -9.05 -42.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488340241.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.907 kcal (2) G-P(sol) polarization free energy of solvation -33.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds