Wall clock time and date at job start Tue Mar 31 2020 06:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47059 * 2 1 4 4 C 1.53001 * 109.47216 * 179.97438 * 3 2 1 5 5 O 1.42895 * 109.47278 * 179.97438 * 4 3 2 6 6 C 1.35902 * 116.99624 * 179.97438 * 5 4 3 7 7 C 1.38806 * 120.02584 * 359.73027 * 6 5 4 8 8 C 1.38160 * 120.08385 * 179.69589 * 7 6 5 9 9 C 1.38167 * 120.12512 * 0.60150 * 8 7 6 10 10 C 1.38887 * 120.04158 * 359.67225 * 9 8 7 11 11 N 1.39931 * 120.04471 * 180.02562 * 10 9 8 12 12 C 1.34784 * 120.00054 * 213.28010 * 11 10 9 13 13 O 1.21585 * 119.99808 * 5.31519 * 12 11 10 14 14 N 1.34777 * 119.99625 * 185.31577 * 12 11 10 15 15 C 1.46508 * 119.99454 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.46750 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00358 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99802 * 179.97438 * 16 15 14 19 19 N 1.31507 * 119.99915 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99899 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47140 * 60.00485 * 20 18 16 22 22 H 1.48497 * 109.47005 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.46917 * 300.00166 * 20 18 16 24 24 C 1.38591 * 120.01384 * 180.02562 * 6 5 4 25 25 H 1.09004 * 109.46985 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47133 * 300.00253 * 1 2 3 27 27 H 1.09006 * 109.46484 * 60.00365 * 1 2 3 28 28 H 1.08996 * 109.47133 * 239.99746 * 2 1 3 29 29 H 1.09006 * 109.46484 * 119.99635 * 2 1 3 30 30 H 1.08996 * 109.47355 * 59.99883 * 3 2 1 31 31 H 1.08992 * 109.46896 * 299.99691 * 3 2 1 32 32 H 1.09007 * 109.46974 * 59.99450 * 4 3 2 33 33 H 1.09002 * 109.46892 * 300.00308 * 4 3 2 34 34 H 1.07997 * 119.95149 * 359.97143 * 7 6 5 35 35 H 1.07998 * 119.94182 * 180.27555 * 8 7 6 36 36 H 1.08003 * 119.98611 * 179.70083 * 9 8 7 37 37 H 0.96999 * 120.00107 * 33.27859 * 11 10 9 38 38 H 0.96997 * 120.00215 * 359.97438 * 14 12 11 39 39 H 1.09000 * 109.46956 * 300.00053 * 15 14 12 40 40 H 1.08997 * 109.46868 * 60.00296 * 15 14 12 41 41 H 0.97004 * 119.99814 * 179.97438 * 19 18 16 42 42 H 1.07992 * 120.06468 * 359.97438 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.3937 2.9678 0.0010 7 6 6.2396 1.8673 0.0082 8 6 7.6095 2.0468 0.0029 9 6 8.1418 3.3218 0.0030 10 6 7.3002 4.4267 0.0015 11 7 7.8392 5.7180 0.0010 12 6 7.1978 6.7163 0.6403 13 8 6.2034 6.4771 1.2978 14 7 7.6588 7.9796 0.5507 15 6 6.9612 9.0648 1.2451 16 6 7.6740 10.3669 0.9859 17 1 8.5579 10.3846 0.3656 18 6 7.1971 11.5360 1.5398 19 7 6.1205 11.5146 2.2947 20 14 8.0803 13.1503 1.2179 21 1 8.0942 13.4245 -0.2415 22 1 7.3733 14.2502 1.9218 23 1 9.4756 13.0594 1.7179 24 6 5.9238 4.2483 0.0011 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9562 -0.8900 32 1 3.9337 0.9285 -0.8891 33 1 3.9330 0.9288 0.8909 34 1 5.8264 0.8695 0.0135 35 1 8.2656 1.1889 0.0040 36 1 9.2130 3.4595 0.0037 37 1 8.6745 5.8947 -0.4594 38 1 8.4523 8.1703 0.0265 39 1 5.9369 9.1315 0.8784 40 1 6.9513 8.8634 2.3163 41 1 5.7852 12.3371 2.6847 42 1 5.2672 5.1056 -0.0001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488340241.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:59 Heat of formation + Delta-G solvation = -82.225858 kcal Electronic energy + Delta-G solvation = -22127.009807 eV Core-core repulsion = 18684.862355 eV Total energy + Delta-G solvation = -3442.147452 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.74018 -40.69405 -38.66176 -36.31643 -36.06565 -35.42530 -34.35476 -31.70994 -30.61218 -29.79645 -28.89464 -25.35359 -24.75045 -23.84344 -22.70494 -22.10386 -21.65578 -19.92655 -19.48339 -18.08832 -17.36070 -17.33203 -17.14548 -16.80571 -16.54818 -16.31357 -15.69177 -15.62097 -15.09284 -14.72489 -14.51830 -14.31218 -14.13416 -14.04662 -13.84424 -13.36617 -13.05477 -12.92549 -12.68551 -12.66481 -12.41432 -12.23418 -12.03268 -11.94844 -11.85335 -11.52259 -11.51196 -11.29626 -11.10629 -10.80905 -9.96190 -9.37338 -8.97083 -8.29490 -6.46627 0.31285 0.49174 1.42866 1.47978 1.55446 1.66114 2.06816 2.24581 2.39134 2.86805 3.05480 3.39901 3.84827 3.90636 3.97788 4.13260 4.15042 4.30561 4.31035 4.34786 4.45247 4.58483 4.63360 4.74531 4.83648 4.90589 5.00441 5.05239 5.20446 5.22508 5.30547 5.31018 5.35736 5.36974 5.42435 5.43537 5.51023 5.63284 5.80762 5.92628 6.17054 6.51349 6.64059 7.14455 7.23884 7.56546 8.82665 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019957 B = 0.002637 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.666046 B =10614.896818 C =11881.358972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.114 4.114 3 C -0.121 4.121 4 C 0.053 3.947 5 O -0.343 6.343 6 C 0.134 3.866 7 C -0.226 4.226 8 C -0.050 4.050 9 C -0.182 4.182 10 C 0.194 3.806 11 N -0.672 5.672 12 C 0.689 3.311 13 O -0.626 6.626 14 N -0.714 5.714 15 C 0.285 3.715 16 C -0.557 4.557 17 H 0.087 0.913 18 C 0.003 3.997 19 N -0.931 5.931 20 Si 0.988 3.012 21 H -0.262 1.262 22 H -0.286 1.286 23 H -0.261 1.261 24 C -0.196 4.196 25 H 0.068 0.932 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.156 0.844 35 H 0.172 0.828 36 H 0.158 0.842 37 H 0.426 0.574 38 H 0.408 0.592 39 H -0.014 1.014 40 H -0.012 1.012 41 H 0.269 0.731 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.323 -25.363 -8.505 26.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.152 4.152 3 C -0.159 4.159 4 C -0.021 4.021 5 O -0.258 6.258 6 C 0.088 3.912 7 C -0.245 4.245 8 C -0.068 4.068 9 C -0.203 4.203 10 C 0.098 3.902 11 N -0.321 5.321 12 C 0.389 3.611 13 O -0.507 6.507 14 N -0.367 5.367 15 C 0.162 3.838 16 C -0.594 4.594 17 H 0.105 0.895 18 C -0.197 4.197 19 N -0.569 5.569 20 Si 0.811 3.189 21 H -0.186 1.186 22 H -0.211 1.211 23 H -0.185 1.185 24 C -0.217 4.217 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.173 0.827 35 H 0.189 0.811 36 H 0.176 0.824 37 H 0.265 0.735 38 H 0.244 0.756 39 H 0.004 0.996 40 H 0.006 0.994 41 H 0.078 0.922 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.154 -25.200 -7.808 26.382 hybrid contribution 0.415 1.408 -0.133 1.473 sum 0.569 -23.792 -7.941 25.089 Atomic orbital electron populations 1.21777 0.95086 1.02442 1.01862 1.21407 0.96491 0.93970 1.03300 1.21623 0.92162 0.99151 1.02936 1.23116 0.95812 0.80486 1.02698 1.86063 1.19350 1.31718 1.88627 1.18864 0.82857 0.93560 0.95896 1.21487 0.94660 0.97939 1.10438 1.21168 0.94232 0.97169 0.94276 1.21119 1.00481 0.90685 1.07974 1.17446 0.91207 0.84090 0.97421 1.42451 1.27550 1.05986 1.56144 1.16317 0.82996 0.81610 0.80164 1.90896 1.29154 1.83392 1.47233 1.45320 1.32437 1.04884 1.54088 1.18470 0.91309 0.83766 0.90283 1.21564 1.13346 0.91677 1.32856 0.89546 1.26101 0.95656 1.03875 0.94072 1.70142 1.23950 1.29739 1.33100 0.85157 0.78436 0.76438 0.78864 1.18629 1.21143 1.18522 1.20301 0.94989 0.95855 1.10597 0.91298 0.93053 0.92772 0.90475 0.90857 0.92121 0.91561 0.90160 0.90845 0.82652 0.81101 0.82448 0.73475 0.75578 0.99572 0.99414 0.92196 0.88369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 71.98 0.71 -1.05 16 2 C -0.11 -1.33 5.93 30.60 0.18 -1.15 16 3 C -0.12 -2.11 5.58 30.59 0.17 -1.94 16 4 C 0.05 1.02 4.74 71.98 0.34 1.36 16 5 O -0.34 -10.44 10.13 -92.45 -0.94 -11.38 16 6 C 0.13 4.12 6.68 22.49 0.15 4.27 16 7 C -0.23 -4.86 9.04 22.39 0.20 -4.66 16 8 C -0.05 -0.91 10.03 22.23 0.22 -0.68 16 9 C -0.18 -3.98 9.96 22.41 0.22 -3.76 16 10 C 0.19 6.10 6.28 38.14 0.24 6.34 16 11 N -0.67 -21.32 5.35 -317.22 -1.70 -23.02 16 12 C 0.69 30.17 8.30 179.05 1.49 31.65 16 13 O -0.63 -34.00 14.02 -3.98 -0.06 -34.05 16 14 N -0.71 -31.36 5.55 -482.28 -2.68 -34.03 16 15 C 0.28 16.06 5.43 85.63 0.46 16.53 16 16 C -0.56 -30.57 9.28 25.60 0.24 -30.33 16 17 H 0.09 4.23 7.60 -2.91 -0.02 4.21 16 18 C 0.00 0.15 5.46 84.66 0.46 0.61 16 19 N -0.93 -56.94 13.29 21.45 0.28 -56.65 16 20 Si 0.99 42.54 29.54 68.60 2.03 44.56 16 21 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 22 H -0.29 -12.24 7.11 99.48 0.71 -11.54 16 23 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 24 C -0.20 -7.30 8.59 22.49 0.19 -7.11 16 25 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 28 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 1.19 7.67 -2.38 -0.02 1.18 16 33 H 0.07 1.20 7.65 -2.39 -0.02 1.18 16 34 H 0.16 2.28 6.29 -2.91 -0.02 2.27 16 35 H 0.17 1.60 8.06 -2.91 -0.02 1.57 16 36 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 37 H 0.43 9.47 8.83 -92.71 -0.82 8.65 16 38 H 0.41 14.41 8.34 -92.71 -0.77 13.63 16 39 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 40 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 41 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 42 H 0.10 4.54 6.41 -2.91 -0.02 4.52 16 Total: -1.00 -79.31 354.91 1.67 -77.63 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: -0.56 Total: 26.84 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: 5.29 Total: 10.10 kcal Atomic # 7 Polarization: -109.61 SS G_CDS: -4.09 Total: -113.70 kcal Atomic # 8 Polarization: -44.44 SS G_CDS: -0.99 Total: -45.44 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Total: -79.31 1.67 -77.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488340241.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.591 kcal (2) G-P(sol) polarization free energy of solvation -79.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds