Wall clock time and date at job start Tue Mar 31 2020 07:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47514 * 2 1 4 4 H 1.08997 * 109.46967 * 54.98955 * 3 2 1 5 5 C 1.52992 * 109.47559 * 174.99786 * 3 2 1 6 6 O 1.42906 * 109.46918 * 295.00059 * 3 2 1 7 7 C 1.35892 * 117.00360 * 155.09237 * 6 3 2 8 8 C 1.38810 * 120.01975 * 5.41555 * 7 6 3 9 9 C 1.38162 * 120.08240 * 179.74632 * 8 7 6 10 10 C 1.38167 * 120.12860 * 0.25227 * 9 8 7 11 11 C 1.38880 * 120.03772 * 0.02562 * 10 9 8 12 12 N 1.39938 * 120.04273 * 179.97438 * 11 10 9 13 13 C 1.34778 * 119.99907 * 35.83354 * 12 11 10 14 14 O 1.21583 * 119.99791 * 355.45795 * 13 12 11 15 15 N 1.34780 * 120.00025 * 175.45820 * 13 12 11 16 16 C 1.46498 * 119.99937 * 179.97438 * 15 13 12 17 17 C 1.50695 * 109.46942 * 180.02562 * 16 15 13 18 18 H 1.07999 * 120.00130 * 0.02562 * 17 16 15 19 19 C 1.37883 * 119.99608 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99463 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00205 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46699 * 90.00335 * 21 19 17 23 23 H 1.48501 * 109.47086 * 209.99914 * 21 19 17 24 24 H 1.48496 * 109.47317 * 330.00105 * 21 19 17 25 25 C 1.38590 * 120.02338 * 185.68927 * 7 6 3 26 26 H 1.08995 * 109.47303 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47520 * 300.00236 * 1 2 3 28 28 H 1.09005 * 109.46567 * 60.00667 * 1 2 3 29 29 H 1.09007 * 109.47626 * 239.99531 * 2 1 3 30 30 H 1.09005 * 109.47071 * 119.99491 * 2 1 3 31 31 H 1.09004 * 109.46985 * 299.99832 * 5 3 2 32 32 H 1.09000 * 109.47391 * 60.00050 * 5 3 2 33 33 H 1.08999 * 109.47072 * 179.97438 * 5 3 2 34 34 H 1.08000 * 119.95699 * 0.02562 * 8 7 6 35 35 H 1.08006 * 119.93762 * 180.27045 * 9 8 7 36 36 H 1.07997 * 119.98140 * 180.02562 * 10 9 8 37 37 H 0.97006 * 120.00334 * 215.82823 * 12 11 10 38 38 H 0.97002 * 119.99943 * 359.97438 * 15 13 12 39 39 H 1.09000 * 109.47121 * 299.99962 * 16 15 13 40 40 H 1.08995 * 109.47000 * 59.99914 * 16 15 13 41 41 H 0.97007 * 119.99586 * 179.97438 * 20 19 17 42 42 H 1.07995 * 120.05721 * 0.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 3.5648 1.4443 0.1258 6 8 1.6620 2.0814 -1.2211 7 6 1.5541 3.4358 -1.2011 8 6 1.9151 4.1445 -0.0634 9 6 1.8109 5.5221 -0.0435 10 6 1.3423 6.1983 -1.1536 11 6 0.9742 5.4939 -2.2925 12 7 0.4991 6.1786 -3.4167 13 6 1.0125 7.3822 -3.7395 14 8 1.8287 7.9106 -3.0094 15 7 0.6212 8.0002 -4.8715 16 6 1.1789 9.3088 -5.2220 17 6 0.5811 9.7772 -6.5236 18 1 -0.1422 9.1619 -7.0381 19 6 0.9569 10.9918 -7.0572 20 7 0.4347 11.4008 -8.1928 21 14 2.2063 12.0569 -6.1663 22 1 3.5733 11.7106 -6.6317 23 1 1.9327 13.4876 -6.4552 24 1 2.1063 11.8193 -4.7039 25 6 1.0783 4.1101 -2.3145 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 3.8531 0.9570 1.0572 32 1 3.9995 0.9053 -0.7160 33 1 3.9282 2.4719 0.1253 34 1 2.2821 3.6188 0.8056 35 1 2.0965 6.0715 0.8414 36 1 1.2621 7.2751 -1.1355 37 1 -0.1998 5.7870 -3.9637 38 1 -0.0296 7.5785 -5.4542 39 1 0.9441 10.0262 -4.4358 40 1 2.2606 9.2263 -5.3274 41 1 0.6988 12.2555 -8.5680 42 1 0.7924 3.5599 -3.1988 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488371860.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:03 Heat of formation + Delta-G solvation = -71.350833 kcal Electronic energy + Delta-G solvation = -22533.681899 eV Core-core repulsion = 19092.006023 eV Total energy + Delta-G solvation = -3441.675876 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.77753 -40.89593 -38.76653 -36.28828 -35.70439 -34.97372 -34.38495 -31.60162 -30.68860 -30.52368 -29.21743 -25.10569 -24.64352 -23.67515 -23.46591 -22.15456 -21.31912 -20.05038 -19.44078 -18.43409 -17.52815 -17.18332 -17.01484 -16.50063 -16.21950 -16.16297 -15.86391 -15.07815 -15.05517 -14.79349 -14.55398 -14.44272 -14.37118 -14.18615 -14.05901 -13.33606 -13.05535 -13.00266 -12.82310 -12.70659 -12.62354 -12.13213 -11.98484 -11.92508 -11.70558 -11.65852 -11.43198 -11.33091 -11.04822 -10.91856 -10.05557 -9.43157 -8.94728 -8.39799 -6.46982 0.27704 0.49489 1.34254 1.36049 1.49099 1.58228 2.05057 2.28806 2.32948 2.83783 2.95897 3.32930 3.74569 3.90053 3.99506 4.05418 4.19753 4.28728 4.31921 4.44887 4.55131 4.60810 4.70574 4.71617 4.74455 4.87176 5.00197 5.03355 5.10424 5.18898 5.21771 5.26692 5.30249 5.31581 5.37031 5.43356 5.44842 5.58431 5.89594 5.95561 6.21691 6.51943 6.54912 7.04748 7.18665 7.50514 8.74804 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.036870 B = 0.002620 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.240931 B =10684.222754 C =11052.442684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C 0.072 3.928 4 H 0.083 0.917 5 C -0.180 4.180 6 O -0.318 6.318 7 C 0.147 3.853 8 C -0.223 4.223 9 C -0.062 4.062 10 C -0.181 4.181 11 C 0.194 3.806 12 N -0.675 5.675 13 C 0.696 3.304 14 O -0.618 6.618 15 N -0.714 5.714 16 C 0.251 3.749 17 C -0.547 4.547 18 H 0.060 0.940 19 C 0.027 3.973 20 N -0.931 5.931 21 Si 0.938 3.062 22 H -0.266 1.266 23 H -0.273 1.273 24 H -0.259 1.259 25 C -0.191 4.191 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.044 0.956 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.154 0.846 35 H 0.148 0.852 36 H 0.116 0.884 37 H 0.422 0.578 38 H 0.408 0.592 39 H 0.015 0.985 40 H 0.012 0.988 41 H 0.273 0.727 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.603 -23.584 19.882 30.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.153 4.153 3 C 0.017 3.983 4 H 0.101 0.899 5 C -0.238 4.238 6 O -0.233 6.233 7 C 0.101 3.899 8 C -0.242 4.242 9 C -0.081 4.081 10 C -0.202 4.202 11 C 0.099 3.901 12 N -0.324 5.324 13 C 0.397 3.603 14 O -0.499 6.499 15 N -0.367 5.367 16 C 0.127 3.873 17 C -0.585 4.585 18 H 0.078 0.922 19 C -0.174 4.174 20 N -0.569 5.569 21 Si 0.761 3.239 22 H -0.191 1.191 23 H -0.198 1.198 24 H -0.183 1.183 25 C -0.212 4.212 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.122 0.878 31 H 0.113 0.887 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.171 0.829 35 H 0.165 0.835 36 H 0.134 0.866 37 H 0.261 0.739 38 H 0.243 0.757 39 H 0.033 0.967 40 H 0.030 0.970 41 H 0.082 0.918 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.287 -23.033 20.138 30.681 hybrid contribution -0.177 0.683 -0.703 0.996 sum 2.110 -22.350 19.435 29.693 Atomic orbital electron populations 1.21767 0.95419 1.02315 1.01737 1.21672 0.96555 0.93010 1.04081 1.22806 0.95734 0.94532 0.85248 0.89891 1.22394 0.94496 1.02950 1.03911 1.86092 1.83806 1.15996 1.37377 1.18629 0.94510 0.83035 0.93744 1.21448 1.08816 0.94825 0.99142 1.21052 0.95470 0.93861 0.97668 1.21251 1.05343 1.00720 0.92881 1.17301 0.96671 0.90278 0.85869 1.42414 1.42016 1.18811 1.29157 1.16116 0.81164 0.81019 0.82043 1.90852 1.38848 1.67035 1.53156 1.45131 1.47096 1.21837 1.22604 1.19016 0.93524 0.80238 0.94531 1.21257 1.26317 1.05139 1.05745 0.92176 1.25585 0.97847 0.98634 0.95314 1.69982 1.44662 1.22251 1.20027 0.85851 0.79649 0.78389 0.79972 1.19055 1.19819 1.18275 1.20068 1.09555 0.91625 0.99967 0.91454 0.92414 0.93722 0.91227 0.87760 0.88721 0.92008 0.92560 0.82893 0.83477 0.86597 0.73932 0.75667 0.96689 0.97001 0.91814 0.83990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.81 71.98 0.71 -1.05 16 2 C -0.12 -1.18 5.64 30.59 0.17 -1.01 16 3 C 0.07 0.97 2.22 30.59 0.07 1.04 16 4 H 0.08 0.97 6.31 -2.39 -0.02 0.96 16 5 C -0.18 -2.11 9.17 71.98 0.66 -1.45 16 6 O -0.32 -6.50 9.33 -92.34 -0.86 -7.36 16 7 C 0.15 3.39 6.60 22.49 0.15 3.54 16 8 C -0.22 -4.62 8.24 22.39 0.18 -4.44 16 9 C -0.06 -1.48 10.03 22.23 0.22 -1.25 16 10 C -0.18 -5.60 8.69 22.41 0.19 -5.40 16 11 C 0.19 5.77 6.28 38.13 0.24 6.01 16 12 N -0.68 -20.22 5.34 -317.23 -1.69 -21.91 16 13 C 0.70 27.36 8.40 179.05 1.50 28.87 16 14 O -0.62 -28.85 13.82 -3.98 -0.05 -28.90 16 15 N -0.71 -28.93 5.55 -482.31 -2.68 -31.61 16 16 C 0.25 12.35 4.50 85.63 0.38 12.74 16 17 C -0.55 -30.13 9.83 25.60 0.25 -29.88 16 18 H 0.06 3.47 7.84 -2.91 -0.02 3.45 16 19 C 0.03 1.50 5.47 84.66 0.46 1.97 16 20 N -0.93 -55.54 13.96 21.45 0.30 -55.24 16 21 Si 0.94 44.06 27.47 68.60 1.88 45.94 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 23 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 24 H -0.26 -12.02 6.54 99.48 0.65 -11.37 16 25 C -0.19 -4.85 9.91 22.49 0.22 -4.62 16 26 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.04 0.67 7.82 -2.38 -0.02 0.65 16 29 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.06 0.78 6.91 -2.39 -0.02 0.77 16 34 H 0.15 2.26 5.42 -2.91 -0.02 2.24 16 35 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 36 H 0.12 4.21 6.28 -2.91 -0.02 4.19 16 37 H 0.42 9.51 8.84 -92.70 -0.82 8.69 16 38 H 0.41 14.25 8.34 -92.71 -0.77 13.48 16 39 H 0.02 0.78 7.20 -2.39 -0.02 0.76 16 40 H 0.01 0.62 7.57 -2.39 -0.02 0.60 16 41 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 42 H 0.14 3.17 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -70.16 346.82 1.71 -68.44 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: -0.60 Total: 25.58 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 5.42 Total: 5.05 kcal Atomic # 7 Polarization: -104.68 SS G_CDS: -4.07 Total: -108.75 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -0.92 Total: -36.27 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.88 Total: 45.94 kcal Total: -70.16 1.71 -68.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488371860.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.908 kcal (2) G-P(sol) polarization free energy of solvation -70.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds