Wall clock time and date at job start Tue Mar 31 2020 07:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47224 * 2 1 4 4 H 1.09003 * 109.47111 * 55.00306 * 3 2 1 5 5 C 1.53000 * 109.47046 * 174.99611 * 3 2 1 6 6 O 1.42902 * 109.47430 * 294.99946 * 3 2 1 7 7 C 1.35975 * 117.00321 * 155.14164 * 6 3 2 8 8 C 1.38718 * 119.98364 * 5.64035 * 7 6 3 9 9 C 1.38095 * 120.01217 * 179.97438 * 8 7 6 10 10 C 1.38836 * 119.98789 * 0.02562 * 9 8 7 11 11 N 1.40150 * 120.01520 * 179.97438 * 10 9 8 12 12 C 1.34783 * 119.99639 * 33.38359 * 11 10 9 13 13 O 1.21589 * 120.00010 * 5.01350 * 12 11 10 14 14 N 1.34768 * 119.99603 * 185.00755 * 12 11 10 15 15 C 1.46506 * 120.00151 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.47543 * 180.02562 * 15 14 12 17 17 H 1.08004 * 119.99531 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00107 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99812 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99907 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47121 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47037 * 120.00103 * 20 18 16 23 23 H 1.48506 * 109.47169 * 240.00111 * 20 18 16 24 24 C 1.38833 * 119.96710 * 0.27811 * 10 9 8 25 25 C 1.38096 * 119.98848 * 359.41879 * 24 10 9 26 26 H 1.09001 * 109.47097 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47258 * 300.00230 * 1 2 3 28 28 H 1.08998 * 109.46653 * 60.00031 * 1 2 3 29 29 H 1.08998 * 109.47258 * 239.99770 * 2 1 3 30 30 H 1.09005 * 109.46724 * 120.00327 * 2 1 3 31 31 H 1.09001 * 109.46934 * 180.02562 * 5 3 2 32 32 H 1.08993 * 109.47409 * 300.00140 * 5 3 2 33 33 H 1.08996 * 109.46948 * 60.00316 * 5 3 2 34 34 H 1.08005 * 119.99599 * 359.97438 * 8 7 6 35 35 H 1.08005 * 120.00369 * 180.02562 * 9 8 7 36 36 H 0.96991 * 120.00138 * 213.37872 * 11 10 9 37 37 H 0.97002 * 120.00382 * 0.02562 * 14 12 11 38 38 H 1.08994 * 109.47072 * 300.01000 * 15 14 12 39 39 H 1.09000 * 109.46378 * 60.00362 * 15 14 12 40 40 H 0.97003 * 119.99952 * 179.97438 * 19 18 16 41 41 H 1.08002 * 120.00222 * 179.72183 * 24 10 9 42 42 H 1.07997 * 119.99288 * 180.30397 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5649 1.4442 0.1258 6 8 1.6620 2.0814 -1.2210 7 6 1.5551 3.4368 -1.2012 8 6 1.9213 4.1446 -0.0658 9 6 1.8134 5.5211 -0.0452 10 6 1.3377 6.1967 -1.1609 11 7 1.2275 7.5937 -1.1404 12 6 2.1153 8.3295 -0.4426 13 8 3.0639 7.7901 0.0936 14 7 1.9516 9.6633 -0.3394 15 6 2.9163 10.4632 0.4195 16 6 2.5073 11.9131 0.3811 17 1 1.6176 12.2091 -0.1548 18 6 3.2685 12.8615 1.0307 19 7 4.3516 12.5009 1.6836 20 14 2.7611 14.6587 0.9836 21 1 1.5143 14.8004 0.1895 22 1 2.5237 15.1424 2.3674 23 1 3.8417 15.4619 0.3570 24 6 0.9654 5.4872 -2.2947 25 6 1.0797 4.1111 -2.3163 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.9282 2.4719 0.1263 32 1 3.8532 0.9569 1.0571 33 1 3.9995 0.9052 -0.7160 34 1 2.2909 3.6189 0.8023 35 1 2.0990 6.0721 0.8388 36 1 0.5124 8.0309 -1.6284 37 1 1.1947 10.0936 -0.7669 38 1 2.9392 10.1197 1.4537 39 1 3.9067 10.3528 -0.0220 40 1 4.8874 13.1682 2.1404 41 1 0.5911 6.0118 -3.1614 42 1 0.7948 3.5595 -3.2000 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488399804.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:09 Heat of formation + Delta-G solvation = -54.347249 kcal Electronic energy + Delta-G solvation = -22479.988144 eV Core-core repulsion = 19039.049599 eV Total energy + Delta-G solvation = -3440.938545 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.51071 -39.56514 -37.58565 -34.78374 -34.16908 -33.61105 -32.30516 -31.08422 -30.07636 -28.67269 -26.85776 -24.21719 -23.33010 -23.07731 -21.92507 -20.71441 -20.19825 -18.39199 -18.17241 -17.31678 -16.09538 -15.81879 -15.38936 -14.95957 -14.87651 -14.69460 -14.28969 -14.09593 -13.85653 -13.56963 -13.47905 -13.09816 -13.05072 -12.60205 -12.42996 -12.08783 -12.05577 -12.01386 -11.79138 -11.37656 -11.21551 -10.97388 -10.95563 -10.87162 -10.64192 -10.33001 -9.68430 -9.43538 -9.39458 -8.88224 -8.77420 -7.99079 -7.42473 -6.18832 -4.25679 1.40674 1.54818 3.10866 3.22297 3.22944 3.30298 3.33852 3.64149 4.05781 4.30131 4.40862 4.62651 4.74837 4.86885 4.93523 5.02717 5.03639 5.17592 5.20070 5.30053 5.32335 5.41010 5.51723 5.58673 5.63540 5.71390 5.78470 5.91227 5.99796 6.05345 6.10994 6.47079 6.51135 6.61568 7.04604 7.09822 7.39959 7.49103 7.50037 7.50816 7.82410 7.97631 8.68422 8.83325 9.20205 9.41830 10.91402 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.037677 B = 0.002496 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.975287 B =11215.238852 C =11634.555935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C 0.081 3.919 4 H 0.073 0.927 5 C -0.183 4.183 6 O -0.311 6.311 7 C 0.103 3.897 8 C -0.187 4.187 9 C -0.082 4.082 10 C 0.146 3.854 11 N -0.695 5.695 12 C 0.690 3.310 13 O -0.584 6.584 14 N -0.723 5.723 15 C 0.266 3.734 16 C -0.543 4.543 17 H 0.064 0.936 18 C 0.063 3.937 19 N -0.885 5.885 20 Si 0.905 3.095 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.117 4.117 25 C -0.134 4.134 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.129 0.871 35 H 0.141 0.859 36 H 0.402 0.598 37 H 0.388 0.612 38 H 0.027 0.973 39 H 0.027 0.973 40 H 0.266 0.734 41 H 0.129 0.871 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.814 -21.749 -5.564 24.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C 0.024 3.976 4 H 0.091 0.909 5 C -0.240 4.240 6 O -0.226 6.226 7 C 0.058 3.942 8 C -0.207 4.207 9 C -0.102 4.102 10 C 0.050 3.950 11 N -0.344 5.344 12 C 0.390 3.610 13 O -0.462 6.462 14 N -0.374 5.374 15 C 0.145 3.855 16 C -0.581 4.581 17 H 0.082 0.918 18 C -0.141 4.141 19 N -0.522 5.522 20 Si 0.732 3.268 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.138 4.138 25 C -0.153 4.153 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.146 0.854 35 H 0.159 0.841 36 H 0.237 0.763 37 H 0.221 0.779 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.075 0.925 41 H 0.147 0.853 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.770 -22.167 -5.046 24.025 hybrid contribution -0.695 1.577 -0.196 1.734 sum -8.465 -20.589 -5.242 22.871 Atomic orbital electron populations 1.21759 0.95172 1.01692 1.02481 1.21623 0.96802 0.94089 1.03029 1.22454 0.95008 0.93746 0.86348 0.90891 1.22397 0.95329 1.03530 1.02752 1.86075 1.84346 1.16868 1.35296 1.18878 0.98133 0.82347 0.94851 1.21158 1.06436 0.94637 0.98435 1.21091 0.97896 0.93063 0.98165 1.17452 1.01523 0.82214 0.93814 1.42799 1.32639 1.04267 1.54663 1.16167 0.82306 0.82500 0.80006 1.90887 1.31951 1.71302 1.52082 1.45774 1.30981 1.04412 1.56279 1.19048 0.87166 0.88366 0.90944 1.21245 1.11089 0.91339 1.34444 0.91823 1.24950 0.94717 0.99565 0.94820 1.69985 1.15003 1.34399 1.32812 0.86343 0.78545 0.83995 0.77903 1.19648 1.20787 1.20781 1.20635 1.03461 0.93332 0.96409 1.20078 1.04480 0.93113 0.97626 0.92600 0.92789 0.91901 0.90889 0.90218 0.91425 0.91154 0.91523 0.85366 0.84142 0.76332 0.77920 0.95531 0.95536 0.92460 0.85285 0.85287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.81 37.16 0.36 -0.75 16 2 C -0.12 -0.86 5.64 -26.73 -0.15 -1.01 16 3 C 0.08 0.75 2.22 -26.73 -0.06 0.69 16 4 H 0.07 0.67 6.32 -51.93 -0.33 0.34 16 5 C -0.18 -1.60 9.17 37.16 0.34 -1.26 16 6 O -0.31 -3.65 9.34 -19.66 -0.18 -3.84 16 7 C 0.10 1.34 6.60 -39.23 -0.26 1.08 16 8 C -0.19 -2.57 8.23 -39.46 -0.32 -2.89 16 9 C -0.08 -1.31 8.65 -39.41 -0.34 -1.66 16 10 C 0.15 2.22 6.28 -83.61 -0.53 1.69 16 11 N -0.70 -10.75 5.36 -14.19 -0.08 -10.83 16 12 C 0.69 14.11 8.31 -86.92 -0.72 13.39 16 13 O -0.58 -14.26 14.02 5.29 0.07 -14.18 16 14 N -0.72 -15.16 5.55 -66.41 -0.37 -15.53 16 15 C 0.27 7.01 5.43 -5.19 -0.03 6.98 16 16 C -0.54 -14.60 9.28 -34.44 -0.32 -14.92 16 17 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 19 N -0.88 -25.93 13.29 55.43 0.74 -25.19 16 20 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 C -0.12 -1.46 9.96 -39.41 -0.39 -1.85 16 25 C -0.13 -1.63 9.98 -39.46 -0.39 -2.02 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.53 7.82 -51.93 -0.41 0.12 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.70 6.88 -51.93 -0.36 0.34 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.13 1.54 5.41 -52.48 -0.28 1.25 16 35 H 0.14 2.58 6.41 -52.48 -0.34 2.24 16 36 H 0.40 4.72 8.83 -40.82 -0.36 4.36 16 37 H 0.39 6.86 8.34 -40.82 -0.34 6.52 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 42 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 350.60 15.07 5.28 5.28 Total: -1.00 -32.52 350.60 -8.64 -41.15 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -6.17 Total: 8.32 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -2.91 Total: -0.89 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: 0.29 Total: -51.55 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.11 Total: -18.02 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.52 -8.64 -41.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488399804.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.193 kcal (2) G-P(sol) polarization free energy of solvation -32.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds