Wall clock time and date at job start Tue Mar 31 2020 07:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47224 * 2 1 4 4 H 1.09003 * 109.47111 * 55.00306 * 3 2 1 5 5 C 1.53000 * 109.47046 * 174.99611 * 3 2 1 6 6 O 1.42902 * 109.47430 * 294.99946 * 3 2 1 7 7 C 1.35975 * 117.00321 * 155.14164 * 6 3 2 8 8 C 1.38718 * 119.98364 * 5.64035 * 7 6 3 9 9 C 1.38095 * 120.01217 * 179.97438 * 8 7 6 10 10 C 1.38836 * 119.98789 * 0.02562 * 9 8 7 11 11 N 1.40150 * 120.01520 * 179.97438 * 10 9 8 12 12 C 1.34783 * 119.99639 * 33.38359 * 11 10 9 13 13 O 1.21589 * 120.00010 * 5.01350 * 12 11 10 14 14 N 1.34768 * 119.99603 * 185.00755 * 12 11 10 15 15 C 1.46506 * 120.00151 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.47543 * 180.02562 * 15 14 12 17 17 H 1.08004 * 119.99531 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00107 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99812 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99907 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47121 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47037 * 120.00103 * 20 18 16 23 23 H 1.48506 * 109.47169 * 240.00111 * 20 18 16 24 24 C 1.38833 * 119.96710 * 0.27811 * 10 9 8 25 25 C 1.38096 * 119.98848 * 359.41879 * 24 10 9 26 26 H 1.09001 * 109.47097 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47258 * 300.00230 * 1 2 3 28 28 H 1.08998 * 109.46653 * 60.00031 * 1 2 3 29 29 H 1.08998 * 109.47258 * 239.99770 * 2 1 3 30 30 H 1.09005 * 109.46724 * 120.00327 * 2 1 3 31 31 H 1.09001 * 109.46934 * 180.02562 * 5 3 2 32 32 H 1.08993 * 109.47409 * 300.00140 * 5 3 2 33 33 H 1.08996 * 109.46948 * 60.00316 * 5 3 2 34 34 H 1.08005 * 119.99599 * 359.97438 * 8 7 6 35 35 H 1.08005 * 120.00369 * 180.02562 * 9 8 7 36 36 H 0.96991 * 120.00138 * 213.37872 * 11 10 9 37 37 H 0.97002 * 120.00382 * 0.02562 * 14 12 11 38 38 H 1.08994 * 109.47072 * 300.01000 * 15 14 12 39 39 H 1.09000 * 109.46378 * 60.00362 * 15 14 12 40 40 H 0.97003 * 119.99952 * 179.97438 * 19 18 16 41 41 H 1.08002 * 120.00222 * 179.72183 * 24 10 9 42 42 H 1.07997 * 119.99288 * 180.30397 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5649 1.4442 0.1258 6 8 1.6620 2.0814 -1.2210 7 6 1.5551 3.4368 -1.2012 8 6 1.9213 4.1446 -0.0658 9 6 1.8134 5.5211 -0.0452 10 6 1.3377 6.1967 -1.1609 11 7 1.2275 7.5937 -1.1404 12 6 2.1153 8.3295 -0.4426 13 8 3.0639 7.7901 0.0936 14 7 1.9516 9.6633 -0.3394 15 6 2.9163 10.4632 0.4195 16 6 2.5073 11.9131 0.3811 17 1 1.6176 12.2091 -0.1548 18 6 3.2685 12.8615 1.0307 19 7 4.3516 12.5009 1.6836 20 14 2.7611 14.6587 0.9836 21 1 1.5143 14.8004 0.1895 22 1 2.5237 15.1424 2.3674 23 1 3.8417 15.4619 0.3570 24 6 0.9654 5.4872 -2.2947 25 6 1.0797 4.1111 -2.3163 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.9282 2.4719 0.1263 32 1 3.8532 0.9569 1.0571 33 1 3.9995 0.9052 -0.7160 34 1 2.2909 3.6189 0.8023 35 1 2.0990 6.0721 0.8388 36 1 0.5124 8.0309 -1.6284 37 1 1.1947 10.0936 -0.7669 38 1 2.9392 10.1197 1.4537 39 1 3.9067 10.3528 -0.0220 40 1 4.8874 13.1682 2.1404 41 1 0.5911 6.0118 -3.1614 42 1 0.7948 3.5595 -3.2000 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488399804.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:09 Heat of formation + Delta-G solvation = -76.013568 kcal Electronic energy + Delta-G solvation = -22480.927666 eV Core-core repulsion = 19039.049599 eV Total energy + Delta-G solvation = -3441.878067 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.71559 -40.84400 -38.76029 -36.25305 -35.69989 -34.76175 -34.20920 -32.09463 -30.81397 -30.10851 -28.62124 -25.16997 -24.75842 -24.23460 -23.25912 -21.79407 -21.56078 -19.85671 -19.32505 -18.60239 -17.97925 -17.01037 -16.75597 -16.41845 -16.13330 -15.85991 -15.67884 -15.23268 -14.94405 -14.78553 -14.43189 -14.29843 -14.09478 -14.03896 -13.91873 -13.48361 -13.41414 -12.88883 -12.82384 -12.75510 -12.67410 -12.22851 -12.11939 -11.98140 -11.71763 -11.49977 -11.45410 -11.25994 -10.82504 -10.79290 -9.97011 -9.88266 -8.60676 -8.29374 -6.45710 0.34679 0.41124 1.43640 1.45115 1.58056 1.75135 2.11256 2.29051 2.38905 2.85448 3.06044 3.42007 3.72629 3.87323 3.91302 4.00735 4.10423 4.26608 4.39746 4.46378 4.53848 4.61845 4.68175 4.73214 4.91278 4.98933 5.03471 5.08933 5.10047 5.19596 5.24695 5.25559 5.34382 5.37804 5.43245 5.47160 5.51416 5.64932 5.82577 5.90703 6.20801 6.51485 6.65731 7.18710 7.25334 7.61117 8.83138 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.037677 B = 0.002496 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.975287 B =11215.238852 C =11634.555935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.114 4.114 3 C 0.073 3.927 4 H 0.072 0.928 5 C -0.181 4.181 6 O -0.314 6.314 7 C 0.107 3.893 8 C -0.192 4.192 9 C -0.106 4.106 10 C 0.117 3.883 11 N -0.672 5.672 12 C 0.690 3.310 13 O -0.629 6.629 14 N -0.716 5.716 15 C 0.285 3.715 16 C -0.554 4.554 17 H 0.085 0.915 18 C 0.003 3.997 19 N -0.931 5.931 20 Si 0.986 3.014 21 H -0.253 1.253 22 H -0.279 1.279 23 H -0.279 1.279 24 C -0.100 4.100 25 C -0.132 4.132 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.046 0.954 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.137 0.863 35 H 0.107 0.893 36 H 0.423 0.577 37 H 0.407 0.593 38 H -0.012 1.012 39 H -0.012 1.012 40 H 0.269 0.731 41 H 0.164 0.836 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.804 -22.333 -7.331 25.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C 0.017 3.983 4 H 0.090 0.910 5 C -0.238 4.238 6 O -0.229 6.229 7 C 0.061 3.939 8 C -0.211 4.211 9 C -0.126 4.126 10 C 0.022 3.978 11 N -0.322 5.322 12 C 0.390 3.610 13 O -0.510 6.510 14 N -0.369 5.369 15 C 0.162 3.838 16 C -0.592 4.592 17 H 0.103 0.897 18 C -0.197 4.197 19 N -0.569 5.569 20 Si 0.810 3.190 21 H -0.176 1.176 22 H -0.205 1.205 23 H -0.205 1.205 24 C -0.120 4.120 25 C -0.151 4.151 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.094 0.906 30 H 0.118 0.882 31 H 0.065 0.935 32 H 0.108 0.892 33 H 0.087 0.913 34 H 0.155 0.845 35 H 0.125 0.875 36 H 0.261 0.739 37 H 0.243 0.757 38 H 0.006 0.994 39 H 0.005 0.995 40 H 0.078 0.922 41 H 0.181 0.819 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -9.837 -22.790 -6.866 25.755 hybrid contribution -0.069 1.541 0.349 1.582 sum -9.906 -21.249 -6.516 24.334 Atomic orbital electron populations 1.21760 0.95185 1.02420 1.01738 1.21650 0.96739 0.92575 1.04134 1.22717 0.95361 0.94807 0.85420 0.91045 1.22388 0.94983 1.02463 1.03975 1.86087 1.84121 1.16015 1.36666 1.19057 0.97182 0.83044 0.94650 1.21201 1.06646 0.93771 0.99494 1.20959 0.99724 0.94111 0.97853 1.17686 1.03504 0.81749 0.94862 1.42392 1.31897 1.04358 1.53506 1.16280 0.82458 0.82272 0.79965 1.90862 1.34177 1.72077 1.53917 1.45316 1.30796 1.04585 1.56244 1.18462 0.86764 0.89504 0.89104 1.21625 1.11772 0.91255 1.34517 0.89667 1.26069 0.94462 1.05054 0.94079 1.70147 1.16526 1.36356 1.33889 0.85085 0.78759 0.77081 0.78113 1.17586 1.20502 1.20491 1.20932 1.01540 0.93433 0.96091 1.20478 1.03328 0.93155 0.98168 0.91171 0.92928 0.93237 0.90650 0.88206 0.93501 0.89163 0.91266 0.84535 0.87526 0.73885 0.75691 0.99397 0.99453 0.92231 0.81861 0.82461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.81 71.98 0.71 -1.25 16 2 C -0.11 -1.41 5.64 30.59 0.17 -1.24 16 3 C 0.07 1.26 2.22 30.59 0.07 1.32 16 4 H 0.07 1.26 6.32 -2.39 -0.02 1.24 16 5 C -0.18 -3.00 9.17 71.98 0.66 -2.34 16 6 O -0.31 -6.91 9.34 -93.27 -0.87 -7.78 16 7 C 0.11 2.63 6.60 22.50 0.15 2.78 16 8 C -0.19 -5.36 8.23 22.35 0.18 -5.18 16 9 C -0.11 -3.56 8.65 22.38 0.19 -3.36 16 10 C 0.12 3.51 6.28 38.10 0.24 3.75 16 11 N -0.67 -20.49 5.36 -317.06 -1.70 -22.19 16 12 C 0.69 29.09 8.31 179.05 1.49 30.57 16 13 O -0.63 -32.56 14.02 -4.00 -0.06 -32.62 16 14 N -0.72 -30.65 5.55 -482.29 -2.68 -33.33 16 15 C 0.28 15.72 5.43 85.63 0.46 16.19 16 16 C -0.55 -29.99 9.28 25.60 0.24 -29.75 16 17 H 0.09 4.15 7.60 -2.91 -0.02 4.13 16 18 C 0.00 0.16 5.46 84.65 0.46 0.63 16 19 N -0.93 -56.14 13.29 21.45 0.28 -55.85 16 20 Si 0.99 42.16 29.54 68.60 2.03 44.18 16 21 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 22 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 23 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 24 C -0.10 -2.23 9.96 22.38 0.22 -2.01 16 25 C -0.13 -2.88 9.98 22.35 0.22 -2.66 16 26 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.05 0.76 7.82 -2.39 -0.02 0.74 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.05 0.97 6.88 -2.39 -0.02 0.96 16 32 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.14 3.41 5.41 -2.91 -0.02 3.40 16 35 H 0.11 4.29 6.41 -2.91 -0.02 4.27 16 36 H 0.42 9.14 8.83 -92.72 -0.82 8.32 16 37 H 0.41 14.09 8.34 -92.71 -0.77 13.32 16 38 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 39 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 40 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 41 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 42 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -73.96 350.60 1.93 -72.03 By element: Atomic # 1 Polarization: 28.66 SS G_CDS: -0.55 Total: 28.11 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 5.47 Total: 7.45 kcal Atomic # 7 Polarization: -107.28 SS G_CDS: -4.09 Total: -111.37 kcal Atomic # 8 Polarization: -39.47 SS G_CDS: -0.93 Total: -40.40 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.18 kcal Total: -73.96 1.93 -72.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488399804.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.984 kcal (2) G-P(sol) polarization free energy of solvation -73.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds